data_3WQJ # _model_server_result.job_id BNzopqPUeZspDy_sLxIT2A _model_server_result.datetime_utc '2024-11-02 13:41:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 3WQJ # _exptl.entry_id 3WQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 807.215 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WQJ _cell.length_a 62.739 _cell.length_b 62.739 _cell.length_c 331.464 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.3695 54.333568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.3695 54.333568 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.456 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C46 H95 O8 P' _chem_comp.formula_weight 807.215 _chem_comp.id L4P _chem_comp.mon_nstd_flag . _chem_comp.name 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 L4P sing 553 n n C1 O1 L4P sing 554 n n C1 H12 L4P sing 555 n n C1 H11 L4P sing 556 n n C2 C3 L4P sing 557 n n C2 O2 L4P sing 558 n n C2 H2 L4P sing 559 n n C3 O3 L4P sing 560 n n C3 H32 L4P sing 561 n n C3 H31 L4P sing 562 n n C4 C5 L4P sing 563 n n C4 O4 L4P sing 564 n n C4 H42 L4P sing 565 n n C4 H41 L4P sing 566 n n C5 C6 L4P sing 567 n n C5 O5 L4P sing 568 n n C5 H5 L4P sing 569 n n C6 O6 L4P sing 570 n n C6 H62 L4P sing 571 n n C6 H61 L4P sing 572 n n O1 C11 L4P sing 573 n n O2 C41 L4P sing 574 n n O3 P1 L4P sing 575 n n O4 P1 L4P sing 576 n n O5 H5O L4P sing 577 n n O6 H6O L4P sing 578 n n O1P P1 L4P doub 579 n n O2P P1 L4P sing 580 n n O2P HOP2 L4P sing 581 n n C11 C12 L4P sing 582 n n C11 H112 L4P sing 583 n n C11 H111 L4P sing 584 n n C12 C13 L4P sing 585 n n C12 H122 L4P sing 586 n n C12 H121 L4P sing 587 n n C13 C14 L4P sing 588 n n C13 C15 L4P sing 589 n n C13 H13 L4P sing 590 n n C14 H143 L4P sing 591 n n C14 H142 L4P sing 592 n n C14 H141 L4P sing 593 n n C15 C16 L4P sing 594 n n C15 H152 L4P sing 595 n n C15 H151 L4P sing 596 n n C16 C17 L4P sing 597 n n C16 H162 L4P sing 598 n n C16 H161 L4P sing 599 n n C17 C18 L4P sing 600 n n C17 H172 L4P sing 601 n n C17 H171 L4P sing 602 n n C18 C19 L4P sing 603 n n C18 C20 L4P sing 604 n n C18 H18 L4P sing 605 n n C19 H193 L4P sing 606 n n C19 H192 L4P sing 607 n n C19 H191 L4P sing 608 n n C20 C21 L4P sing 609 n n C20 H202 L4P sing 610 n n C20 H201 L4P sing 611 n n C21 C22 L4P sing 612 n n C21 H212 L4P sing 613 n n C21 H211 L4P sing 614 n n C22 C23 L4P sing 615 n n C22 H222 L4P sing 616 n n C22 H221 L4P sing 617 n n C23 C24 L4P sing 618 n n C23 C25 L4P sing 619 n n C23 H23 L4P sing 620 n n C24 H243 L4P sing 621 n n C24 H242 L4P sing 622 n n C24 H241 L4P sing 623 n n C25 C26 L4P sing 624 n n C25 H252 L4P sing 625 n n C25 H251 L4P sing 626 n n C26 C27 L4P sing 627 n n C26 H262 L4P sing 628 n n C26 H261 L4P sing 629 n n C27 C28 L4P sing 630 n n C27 H272 L4P sing 631 n n C27 H271 L4P sing 632 n n C28 C29 L4P sing 633 n n C28 C30 L4P sing 634 n n C28 H28 L4P sing 635 n n C29 H293 L4P sing 636 n n C29 H292 L4P sing 637 n n C29 H291 L4P sing 638 n n C30 H303 L4P sing 639 n n C30 H302 L4P sing 640 n n C30 H301 L4P sing 641 n n C41 C42 L4P sing 642 n n C41 H412 L4P sing 643 n n C41 H411 L4P sing 644 n n C42 C43 L4P sing 645 n n C42 H422 L4P sing 646 n n C42 H421 L4P sing 647 n n C43 C44 L4P sing 648 n n C43 C45 L4P sing 649 n n C43 H43 L4P sing 650 n n C44 H443 L4P sing 651 n n C44 H442 L4P sing 652 n n C44 H441 L4P sing 653 n n C45 C46 L4P sing 654 n n C45 H452 L4P sing 655 n n C45 H451 L4P sing 656 n n C46 C47 L4P sing 657 n n C46 H462 L4P sing 658 n n C46 H461 L4P sing 659 n n C47 C48 L4P sing 660 n n C47 H472 L4P sing 661 n n C47 H471 L4P sing 662 n n C48 C49 L4P sing 663 n n C48 C50 L4P sing 664 n n C48 H48 L4P sing 665 n n C49 H493 L4P sing 666 n n C49 H492 L4P sing 667 n n C49 H491 L4P sing 668 n n C50 C51 L4P sing 669 n n C50 H502 L4P sing 670 n n C50 H501 L4P sing 671 n n C51 C52 L4P sing 672 n n C51 H512 L4P sing 673 n n C51 H511 L4P sing 674 n n C52 C53 L4P sing 675 n n C52 H522 L4P sing 676 n n C52 H521 L4P sing 677 n n C53 C54 L4P sing 678 n n C53 C55 L4P sing 679 n n C53 H53 L4P sing 680 n n C54 H543 L4P sing 681 n n C54 H542 L4P sing 682 n n C54 H541 L4P sing 683 n n C55 C56 L4P sing 684 n n C55 H552 L4P sing 685 n n C55 H551 L4P sing 686 n n C56 C57 L4P sing 687 n n C56 H562 L4P sing 688 n n C56 H561 L4P sing 689 n n C57 C58 L4P sing 690 n n C57 H572 L4P sing 691 n n C57 H571 L4P sing 692 n n C58 C59 L4P sing 693 n n C58 C60 L4P sing 694 n n C58 H58 L4P sing 695 n n C59 H593 L4P sing 696 n n C59 H592 L4P sing 697 n n C59 H591 L4P sing 698 n n C60 H603 L4P sing 699 n n C60 H602 L4P sing 700 n n C60 H601 L4P sing 701 n n # _atom_sites.entry_id 3WQJ _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0.009202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 260 RET RET . C 3 22B A 1 302 270 22B 22B . D 4 SO4 A 1 303 300 SO4 SO4 . E 5 L2P A 1 304 280 L2P L2P . F 6 L3P A 1 305 281 L3P L3P . G 7 L4P A 1 306 290 L4P L4P . H 7 L4P A 1 307 291 L4P L4P . I 8 SQL A 1 308 380 SQL SQU . J 9 HOH A 1 401 401 HOH HOH . J 9 HOH A 2 402 402 HOH HOH . J 9 HOH A 3 403 403 HOH HOH . J 9 HOH A 4 404 404 HOH HOH . J 9 HOH A 5 405 405 HOH HOH . J 9 HOH A 6 406 406 HOH HOH . J 9 HOH A 7 407 407 HOH HOH . J 9 HOH A 8 408 408 HOH HOH . J 9 HOH A 9 409 409 HOH HOH . J 9 HOH A 10 410 410 HOH HOH . J 9 HOH A 11 411 411 HOH HOH . J 9 HOH A 12 412 412 HOH HOH . J 9 HOH A 13 413 413 HOH HOH . J 9 HOH A 14 414 414 HOH HOH . J 9 HOH A 15 415 415 HOH HOH . J 9 HOH A 16 416 416 HOH HOH . J 9 HOH A 17 417 417 HOH HOH . J 9 HOH A 18 418 419 HOH HOH . J 9 HOH A 19 419 420 HOH HOH . J 9 HOH A 20 420 421 HOH HOH . J 9 HOH A 21 421 422 HOH HOH . J 9 HOH A 22 422 423 HOH HOH . J 9 HOH A 23 423 424 HOH HOH . J 9 HOH A 24 424 425 HOH HOH . J 9 HOH A 25 425 426 HOH HOH . J 9 HOH A 26 426 427 HOH HOH . J 9 HOH A 27 427 428 HOH HOH . J 9 HOH A 28 428 429 HOH HOH . J 9 HOH A 29 429 430 HOH HOH . J 9 HOH A 30 430 431 HOH HOH . J 9 HOH A 31 431 432 HOH HOH . J 9 HOH A 32 432 433 HOH HOH . J 9 HOH A 33 433 434 HOH HOH . J 9 HOH A 34 434 435 HOH HOH . J 9 HOH A 35 435 436 HOH HOH . J 9 HOH A 36 436 437 HOH HOH . J 9 HOH A 37 437 441 HOH HOH . J 9 HOH A 38 438 442 HOH HOH . J 9 HOH A 39 439 443 HOH HOH . J 9 HOH A 40 440 444 HOH HOH . J 9 HOH A 41 441 445 HOH HOH . J 9 HOH A 42 442 446 HOH HOH . J 9 HOH A 43 443 447 HOH HOH . J 9 HOH A 44 444 448 HOH HOH . J 9 HOH A 45 445 449 HOH HOH . J 9 HOH A 46 446 450 HOH HOH . J 9 HOH A 47 447 451 HOH HOH . J 9 HOH A 48 448 452 HOH HOH . J 9 HOH A 49 449 453 HOH HOH . J 9 HOH A 50 450 454 HOH HOH . J 9 HOH A 51 451 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 L4P . . . G 7 2.392 31.378 13.411 1 57.86 ? C15 L4P 306 A 1 HETATM 2 C C16 L4P . . . G 7 2.226 31.576 14.899 1 57.17 ? C16 L4P 306 A 1 HETATM 3 C C17 L4P . . . G 7 3.553 31.865 15.597 1 57.8 ? C17 L4P 306 A 1 HETATM 4 C C18 L4P . . . G 7 3.326 32.441 16.997 1 56.71 ? C18 L4P 306 A 1 HETATM 5 C C19 L4P . . . G 7 4.12 33.731 17.212 1 57.28 ? C19 L4P 306 A 1 HETATM 6 C C20 L4P . . . G 7 3.656 31.388 18.05 1 56.32 ? C20 L4P 306 A 1 HETATM 7 C C21 L4P . . . G 7 3.053 31.694 19.426 1 55.25 ? C21 L4P 306 A 1 HETATM 8 C C22 L4P . . . G 7 3.483 30.644 20.449 1 54.27 ? C22 L4P 306 A 1 HETATM 9 C C23 L4P . . . G 7 3.428 31.171 21.873 1 53.12 ? C23 L4P 306 A 1 HETATM 10 C C24 L4P . . . G 7 4.67 30.743 22.645 1 52.8 ? C24 L4P 306 A 1 HETATM 11 C C25 L4P . . . G 7 2.176 30.656 22.564 1 52.75 ? C25 L4P 306 A 1 HETATM 12 C C26 L4P . . . G 7 1.658 31.635 23.609 1 52.81 ? C26 L4P 306 A 1 HETATM 13 C C27 L4P . . . G 7 0.888 30.904 24.709 1 53.37 ? C27 L4P 306 A 1 HETATM 14 C C28 L4P . . . G 7 -0.321 31.687 25.221 1 53.31 ? C28 L4P 306 A 1 HETATM 15 C C29 L4P . . . G 7 -1.658 31.046 24.83 1 52.16 ? C29 L4P 306 A 1 HETATM 16 C C30 L4P . . . G 7 -0.225 31.916 26.726 1 52.29 ? C30 L4P 306 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #