data_3WQJ # _model_server_result.job_id 97_lL4RBoPNzPeEtfITX_A _model_server_result.datetime_utc '2024-12-18 05:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 3WQJ # _exptl.entry_id 3WQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.718 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WQJ _cell.length_a 62.739 _cell.length_b 62.739 _cell.length_c 331.464 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.3695 54.333568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.3695 54.333568 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.456 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H50' _chem_comp.formula_weight 410.718 _chem_comp.id SQL _chem_comp.mon_nstd_flag . _chem_comp.name (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms squalene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 SQL sing 872 n n C1 C2 SQL sing 873 n n C2 C4 SQL doub 874 n n C4 C5 SQL sing 875 n n C5 C6 SQL sing 876 n n C6 C7 SQL sing 877 n n C8 C7 SQL sing 878 n n C7 C9 SQL doub 879 e n C9 C10 SQL sing 880 n n C10 C11 SQL sing 881 n n C11 C12 SQL sing 882 n n C13 C12 SQL sing 883 n n C12 C14 SQL doub 884 e n C14 C15 SQL sing 885 n n C15 C16 SQL sing 886 n n C16 C17 SQL sing 887 n n C17 C18 SQL doub 888 e n C18 C19 SQL sing 889 n n C18 C20 SQL sing 890 n n C20 C21 SQL sing 891 n n C21 C22 SQL sing 892 n n C22 C23 SQL doub 893 e n C23 C30 SQL sing 894 n n C23 C24 SQL sing 895 n n C24 C25 SQL sing 896 n n C25 C26 SQL sing 897 n n C26 C27 SQL doub 898 n n C27 C29 SQL sing 899 n n C27 C28 SQL sing 900 n n C1 H1 SQL sing 901 n n C1 H2 SQL sing 902 n n C1 H3 SQL sing 903 n n C3 H4 SQL sing 904 n n C3 H5 SQL sing 905 n n C3 H6 SQL sing 906 n n C4 H7 SQL sing 907 n n C5 H8 SQL sing 908 n n C6 H9 SQL sing 909 n n C8 H10 SQL sing 910 n n C8 H11 SQL sing 911 n n C8 H12 SQL sing 912 n n C9 H13 SQL sing 913 n n C10 H14 SQL sing 914 n n C11 H15 SQL sing 915 n n C13 H16 SQL sing 916 n n C13 H17 SQL sing 917 n n C13 H18 SQL sing 918 n n C14 H19 SQL sing 919 n n C15 H20 SQL sing 920 n n C15 H21 SQL sing 921 n n C16 H22 SQL sing 922 n n C17 H23 SQL sing 923 n n C19 H24 SQL sing 924 n n C19 H25 SQL sing 925 n n C19 H26 SQL sing 926 n n C20 H27 SQL sing 927 n n C21 H28 SQL sing 928 n n C22 H29 SQL sing 929 n n C24 H30 SQL sing 930 n n C25 H31 SQL sing 931 n n C25 H32 SQL sing 932 n n C26 H33 SQL sing 933 n n C28 H34 SQL sing 934 n n C28 H35 SQL sing 935 n n C28 H36 SQL sing 936 n n C29 H37 SQL sing 937 n n C29 H38 SQL sing 938 n n C29 H39 SQL sing 939 n n C30 H40 SQL sing 940 n n C30 H41 SQL sing 941 n n C30 H42 SQL sing 942 n n C5 H43 SQL sing 943 n n C6 H44 SQL sing 944 n n C10 H45 SQL sing 945 n n C11 H46 SQL sing 946 n n C16 H47 SQL sing 947 n n C20 H48 SQL sing 948 n n C21 H49 SQL sing 949 n n C24 H50 SQL sing 950 n n # _atom_sites.entry_id 3WQJ _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0.009202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 260 RET RET . C 3 22B A 1 302 270 22B 22B . D 4 SO4 A 1 303 300 SO4 SO4 . E 5 L2P A 1 304 280 L2P L2P . F 6 L3P A 1 305 281 L3P L3P . G 7 L4P A 1 306 290 L4P L4P . H 7 L4P A 1 307 291 L4P L4P . I 8 SQL A 1 308 380 SQL SQU . J 9 HOH A 1 401 401 HOH HOH . J 9 HOH A 2 402 402 HOH HOH . J 9 HOH A 3 403 403 HOH HOH . J 9 HOH A 4 404 404 HOH HOH . J 9 HOH A 5 405 405 HOH HOH . J 9 HOH A 6 406 406 HOH HOH . J 9 HOH A 7 407 407 HOH HOH . J 9 HOH A 8 408 408 HOH HOH . J 9 HOH A 9 409 409 HOH HOH . J 9 HOH A 10 410 410 HOH HOH . J 9 HOH A 11 411 411 HOH HOH . J 9 HOH A 12 412 412 HOH HOH . J 9 HOH A 13 413 413 HOH HOH . J 9 HOH A 14 414 414 HOH HOH . J 9 HOH A 15 415 415 HOH HOH . J 9 HOH A 16 416 416 HOH HOH . J 9 HOH A 17 417 417 HOH HOH . J 9 HOH A 18 418 419 HOH HOH . J 9 HOH A 19 419 420 HOH HOH . J 9 HOH A 20 420 421 HOH HOH . J 9 HOH A 21 421 422 HOH HOH . J 9 HOH A 22 422 423 HOH HOH . J 9 HOH A 23 423 424 HOH HOH . J 9 HOH A 24 424 425 HOH HOH . J 9 HOH A 25 425 426 HOH HOH . J 9 HOH A 26 426 427 HOH HOH . J 9 HOH A 27 427 428 HOH HOH . J 9 HOH A 28 428 429 HOH HOH . J 9 HOH A 29 429 430 HOH HOH . J 9 HOH A 30 430 431 HOH HOH . J 9 HOH A 31 431 432 HOH HOH . J 9 HOH A 32 432 433 HOH HOH . J 9 HOH A 33 433 434 HOH HOH . J 9 HOH A 34 434 435 HOH HOH . J 9 HOH A 35 435 436 HOH HOH . J 9 HOH A 36 436 437 HOH HOH . J 9 HOH A 37 437 441 HOH HOH . J 9 HOH A 38 438 442 HOH HOH . J 9 HOH A 39 439 443 HOH HOH . J 9 HOH A 40 440 444 HOH HOH . J 9 HOH A 41 441 445 HOH HOH . J 9 HOH A 42 442 446 HOH HOH . J 9 HOH A 43 443 447 HOH HOH . J 9 HOH A 44 444 448 HOH HOH . J 9 HOH A 45 445 449 HOH HOH . J 9 HOH A 46 446 450 HOH HOH . J 9 HOH A 47 447 451 HOH HOH . J 9 HOH A 48 448 452 HOH HOH . J 9 HOH A 49 449 453 HOH HOH . J 9 HOH A 50 450 454 HOH HOH . J 9 HOH A 51 451 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQL . . . I 8 -0.982 35.463 41.91 0.33 71.49 ? C1 SQL 308 A 1 HETATM 2 C C2 SQL . . . I 8 0.292 36.026 41.298 0.33 71.53 ? C2 SQL 308 A 1 HETATM 3 C C3 SQL . . . I 8 0.939 36.99 42.279 0.33 71.37 ? C3 SQL 308 A 1 HETATM 4 C C4 SQL . . . I 8 0.03 36.7 39.954 0.33 71.74 ? C4 SQL 308 A 1 HETATM 5 C C5 SQL . . . I 8 -0.12 35.695 38.815 0.33 72.4 ? C5 SQL 308 A 1 HETATM 6 C C6 SQL . . . I 8 0.701 36.101 37.591 0.33 73.23 ? C6 SQL 308 A 1 HETATM 7 C C7 SQL . . . I 8 -0.161 36.23 36.327 0.33 73.89 ? C7 SQL 308 A 1 HETATM 8 C C8 SQL . . . I 8 -0.825 37.581 36.252 0.33 74.03 ? C8 SQL 308 A 1 HETATM 9 C C9 SQL . . . I 8 0.724 35.981 35.095 0.33 75.09 ? C9 SQL 308 A 1 HETATM 10 C C10 SQL . . . I 8 -0.093 35.885 33.805 0.33 76.52 ? C10 SQL 308 A 1 HETATM 11 C C11 SQL . . . I 8 0.598 36.593 32.639 0.33 77.9 ? C11 SQL 308 A 1 HETATM 12 C C12 SQL . . . I 8 -0.014 36.232 31.286 0.33 79 ? C12 SQL 308 A 1 HETATM 13 C C13 SQL . . . I 8 -1.342 36.948 31.068 0.33 79.01 ? C13 SQL 308 A 1 HETATM 14 C C14 SQL . . . I 8 0.965 36.561 30.161 0.33 80.03 ? C14 SQL 308 A 1 HETATM 15 C C15 SQL . . . I 8 0.202 36.861 28.89 0.33 81.44 ? C15 SQL 308 A 1 HETATM 16 C C16 SQL . . . I 8 0.369 36.104 27.806 0.33 82.7 ? C16 SQL 308 A 1 HETATM 17 C C17 SQL . . . I 8 -0.383 36.406 26.583 0.33 83.63 ? C17 SQL 308 A 1 HETATM 18 C C18 SQL . . . I 8 0.037 35.984 25.395 0.33 84.2 ? C18 SQL 308 A 1 HETATM 19 C C19 SQL . . . I 8 1.315 35.167 25.347 0.33 84.23 ? C19 SQL 308 A 1 HETATM 20 C C20 SQL . . . I 8 -0.692 36.249 24.102 0.33 84.6 ? C20 SQL 308 A 1 HETATM 21 C C21 SQL . . . I 8 0.288 36.616 22.987 0.33 84.8 ? C21 SQL 308 A 1 HETATM 22 C C22 SQL . . . I 8 0.165 35.674 21.791 0.33 85.18 ? C22 SQL 308 A 1 HETATM 23 C C23 SQL . . . I 8 0.844 36.246 20.548 0.33 85.45 ? C23 SQL 308 A 1 HETATM 24 C C24 SQL . . . I 8 0.172 35.688 19.293 0.33 85.54 ? C24 SQL 308 A 1 HETATM 25 C C25 SQL . . . I 8 0.471 36.522 18.048 0.33 85.54 ? C25 SQL 308 A 1 HETATM 26 C C26 SQL . . . I 8 -0.357 36.062 16.848 0.33 85.36 ? C26 SQL 308 A 1 HETATM 27 C C27 SQL . . . I 8 0.405 36.211 15.533 0.33 85.22 ? C27 SQL 308 A 1 HETATM 28 C C28 SQL . . . I 8 0.341 34.93 14.711 0.33 85.17 ? C28 SQL 308 A 1 HETATM 29 C C29 SQL . . . I 8 -0.116 37.393 14.724 0.33 85.24 ? C29 SQL 308 A 1 HETATM 30 C C30 SQL . . . I 8 2.339 35.944 20.554 0.33 85.46 ? C30 SQL 308 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 30 #