data_3WQN
#
_model_server_result.job_id            5i1S7b4AForiBNg2XWH7WA 
_model_server_result.datetime_utc      '2024-11-05 03:29:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wqn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3WQN 
#
_exptl.entry_id    3WQN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.443 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-3-methyl-5-[(1R,2S,8aS)-1,2,5,5-tetramethyl-1,2,3,5,6,7,8,8a-octahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WQN 
_cell.length_a            106.454 
_cell.length_b            106.454 
_cell.length_c            66.36 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WQN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H36 O7 P2' 
_chem_comp.formula_weight    450.443 
_chem_comp.id                9AX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-3-methyl-5-[(1R,2S,8aS)-1,2,5,5-tetramethyl-1,2,3,5,6,7,8,8a-octahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1A PA 9AX doub 1 n n 
O1B PB 9AX doub 2 n n 
O2A PA 9AX sing 3 n n 
PA O3A 9AX sing 4 n n 
PA O 9AX sing 5 n n 
O3A PB 9AX sing 6 n n 
PB O3B 9AX sing 7 n n 
PB O2B 9AX sing 8 n n 
C16 C13 9AX sing 9 n n 
O C15 9AX sing 10 n n 
C15 C14 9AX sing 11 n n 
C13 C14 9AX doub 12 e n 
C13 C12 9AX sing 13 n n 
C2 C1 9AX sing 14 n n 
C2 C3 9AX sing 15 n n 
C1 C10 9AX sing 16 n n 
C3 C4 9AX sing 17 n n 
C11 C12 9AX sing 18 n n 
C11 C9 9AX sing 19 n n 
C10 C9 9AX sing 20 n n 
C10 C5 9AX sing 21 n n 
C9 C20 9AX sing 22 n n 
C9 C8 9AX sing 23 n n 
C4 C5 9AX sing 24 n n 
C4 C18 9AX sing 25 n n 
C4 C19 9AX sing 26 n n 
C5 C6 9AX doub 27 n n 
C8 C17 9AX sing 28 n n 
C8 C7 9AX sing 29 n n 
C6 C7 9AX sing 30 n n 
O2A H1 9AX sing 31 n n 
O2B H2 9AX sing 32 n n 
O3B H3 9AX sing 33 n n 
C2 H4 9AX sing 34 n n 
C2 H5 9AX sing 35 n n 
C6 H6 9AX sing 36 n n 
C7 H7 9AX sing 37 n n 
C7 H8 9AX sing 38 n n 
C15 H9 9AX sing 39 n n 
C15 H10 9AX sing 40 n n 
C14 H11 9AX sing 41 n n 
C16 H12 9AX sing 42 n n 
C16 H13 9AX sing 43 n n 
C16 H14 9AX sing 44 n n 
C12 H15 9AX sing 45 n n 
C12 H16 9AX sing 46 n n 
C11 H17 9AX sing 47 n n 
C11 H18 9AX sing 48 n n 
C20 H19 9AX sing 49 n n 
C20 H20 9AX sing 50 n n 
C20 H21 9AX sing 51 n n 
C10 H22 9AX sing 52 n n 
C1 H23 9AX sing 53 n n 
C1 H24 9AX sing 54 n n 
C3 H25 9AX sing 55 n n 
C3 H26 9AX sing 56 n n 
C18 H27 9AX sing 57 n n 
C18 H28 9AX sing 58 n n 
C18 H29 9AX sing 59 n n 
C19 H30 9AX sing 60 n n 
C19 H31 9AX sing 61 n n 
C19 H32 9AX sing 62 n n 
C8 H33 9AX sing 63 n n 
C17 H34 9AX sing 64 n n 
C17 H35 9AX sing 65 n n 
C17 H36 9AX sing 66 n n 
#
_atom_sites.entry_id                     3WQN 
_atom_sites.fract_transf_matrix[1][1]    0.009394 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015069 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 302 302 PO4 PO4 . 
C 2 PO4 A 1 303 303 PO4 PO4 . 
D 3 9AX A 1 301 301 9AX TPP . 
E 4 HOH A 1 401 304 HOH HOH . 
E 4 HOH A 2 402 401 HOH HOH . 
E 4 HOH A 3 403 402 HOH HOH . 
E 4 HOH A 4 404 403 HOH HOH . 
E 4 HOH A 5 405 404 HOH HOH . 
E 4 HOH A 6 406 405 HOH HOH . 
E 4 HOH A 7 407 406 HOH HOH . 
E 4 HOH A 8 408 407 HOH HOH . 
E 4 HOH A 9 409 408 HOH HOH . 
E 4 HOH A 10 410 409 HOH HOH . 
E 4 HOH A 11 411 410 HOH HOH . 
E 4 HOH A 12 412 411 HOH HOH . 
E 4 HOH A 13 413 412 HOH HOH . 
E 4 HOH A 14 414 413 HOH HOH . 
E 4 HOH A 15 415 414 HOH HOH . 
E 4 HOH A 16 416 415 HOH HOH . 
E 4 HOH A 17 417 416 HOH HOH . 
E 4 HOH A 18 418 417 HOH HOH . 
E 4 HOH A 19 419 418 HOH HOH . 
E 4 HOH A 20 420 419 HOH HOH . 
E 4 HOH A 21 421 420 HOH HOH . 
E 4 HOH A 22 422 421 HOH HOH . 
E 4 HOH A 23 423 422 HOH HOH . 
E 4 HOH A 24 424 423 HOH HOH . 
E 4 HOH A 25 425 424 HOH HOH . 
E 4 HOH A 26 426 425 HOH HOH . 
E 4 HOH A 27 427 426 HOH HOH . 
E 4 HOH A 28 428 427 HOH HOH . 
E 4 HOH A 29 429 428 HOH HOH . 
E 4 HOH A 30 430 429 HOH HOH . 
E 4 HOH A 31 431 430 HOH HOH . 
E 4 HOH A 32 432 431 HOH HOH . 
E 4 HOH A 33 433 432 HOH HOH . 
E 4 HOH A 34 434 433 HOH HOH . 
E 4 HOH A 35 435 434 HOH HOH . 
E 4 HOH A 36 436 435 HOH HOH . 
E 4 HOH A 37 437 436 HOH HOH . 
E 4 HOH A 38 438 437 HOH HOH . 
E 4 HOH A 39 439 438 HOH HOH . 
E 4 HOH A 40 440 439 HOH HOH . 
E 4 HOH A 41 441 440 HOH HOH . 
E 4 HOH A 42 442 441 HOH HOH . 
E 4 HOH A 43 443 442 HOH HOH . 
E 4 HOH A 44 444 443 HOH HOH . 
E 4 HOH A 45 445 444 HOH HOH . 
E 4 HOH A 46 446 445 HOH HOH . 
E 4 HOH A 47 447 446 HOH HOH . 
E 4 HOH A 48 448 447 HOH HOH . 
E 4 HOH A 49 449 448 HOH HOH . 
E 4 HOH A 50 450 449 HOH HOH . 
E 4 HOH A 51 451 450 HOH HOH . 
E 4 HOH A 52 452 451 HOH HOH . 
E 4 HOH A 53 453 452 HOH HOH . 
E 4 HOH A 54 454 454 HOH HOH . 
E 4 HOH A 55 455 455 HOH HOH . 
E 4 HOH A 56 456 456 HOH HOH . 
E 4 HOH A 57 457 457 HOH HOH . 
E 4 HOH A 58 458 458 HOH HOH . 
E 4 HOH A 59 459 459 HOH HOH . 
E 4 HOH A 60 460 460 HOH HOH . 
E 4 HOH A 61 461 461 HOH HOH . 
E 4 HOH A 62 462 462 HOH HOH . 
E 4 HOH A 63 463 463 HOH HOH . 
E 4 HOH A 64 464 464 HOH HOH . 
E 4 HOH A 65 465 465 HOH HOH . 
E 4 HOH A 66 466 466 HOH HOH . 
E 4 HOH A 67 467 468 HOH HOH . 
E 4 HOH A 68 468 469 HOH HOH . 
E 4 HOH A 69 469 473 HOH HOH . 
E 4 HOH A 70 470 474 HOH HOH . 
E 4 HOH A 71 471 475 HOH HOH . 
E 4 HOH A 72 472 476 HOH HOH . 
E 4 HOH A 73 473 477 HOH HOH . 
E 4 HOH A 74 474 478 HOH HOH . 
E 4 HOH A 75 475 479 HOH HOH . 
E 4 HOH A 76 476 480 HOH HOH . 
E 4 HOH A 77 477 481 HOH HOH . 
E 4 HOH A 78 478 482 HOH HOH . 
E 4 HOH A 79 479 483 HOH HOH . 
E 4 HOH A 80 480 484 HOH HOH . 
E 4 HOH A 81 481 485 HOH HOH . 
E 4 HOH A 82 482 487 HOH HOH . 
E 4 HOH A 83 483 488 HOH HOH . 
E 4 HOH A 84 484 489 HOH HOH . 
E 4 HOH A 85 485 490 HOH HOH . 
E 4 HOH A 86 486 491 HOH HOH . 
E 4 HOH A 87 487 492 HOH HOH . 
E 4 HOH A 88 488 493 HOH HOH . 
E 4 HOH A 89 489 494 HOH HOH . 
E 4 HOH A 90 490 495 HOH HOH . 
E 4 HOH A 91 491 496 HOH HOH . 
E 4 HOH A 92 492 497 HOH HOH . 
E 4 HOH A 93 493 499 HOH HOH . 
E 4 HOH A 94 494 500 HOH HOH . 
E 4 HOH A 95 495 501 HOH HOH . 
E 4 HOH A 96 496 502 HOH HOH . 
E 4 HOH A 97 497 503 HOH HOH . 
E 4 HOH A 98 498 504 HOH HOH . 
E 4 HOH A 99 499 505 HOH HOH . 
E 4 HOH A 100 500 506 HOH HOH . 
E 4 HOH A 101 501 507 HOH HOH . 
E 4 HOH A 102 502 508 HOH HOH . 
E 4 HOH A 103 503 509 HOH HOH . 
E 4 HOH A 104 504 510 HOH HOH . 
E 4 HOH A 105 505 511 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1A 9AX . . . D 3 -11.327 -20.523 17.773 1 188.45 ? O1A 9AX 301 A 1 
HETATM 2 O O2A 9AX . . . D 3 -12.17 -18.442 16.397 1 188.78 ? O2A 9AX 301 A 1 
HETATM 3 O O3A 9AX . . . D 3 -11.166 -18.058 18.719 1 189.2 ? O3A 9AX 301 A 1 
HETATM 4 O O1B 9AX . . . D 3 -9.945 -15.954 18.199 1 188.84 ? O1B 9AX 301 A 1 
HETATM 5 O O2B 9AX . . . D 3 -8.78 -18.061 19.33 1 189.06 ? O2B 9AX 301 A 1 
HETATM 6 O O3B 9AX . . . D 3 -9.549 -18.171 16.82 1 189.27 ? O3B 9AX 301 A 1 
HETATM 7 O O 9AX . . . D 3 -13.381 -19.208 18.472 1 187.79 ? O 9AX 301 A 1 
HETATM 8 C C2 9AX . . . D 3 -20.355 -17.949 24.983 1 180.93 ? C2 9AX 301 A 1 
HETATM 9 C C5 9AX . . . D 3 -20.05 -16.587 22.442 1 181.28 ? C5 9AX 301 A 1 
HETATM 10 C C4 9AX . . . D 3 -20.963 -16.118 23.379 1 180.9 ? C4 9AX 301 A 1 
HETATM 11 C C6 9AX . . . D 3 -19.956 -15.918 21.227 1 181.28 ? C6 9AX 301 A 1 
HETATM 12 C C7 9AX . . . D 3 -19.129 -16.303 20.18 1 181.4 ? C7 9AX 301 A 1 
HETATM 13 P PA 9AX . . . D 3 -11.909 -19.163 17.813 1 188.9 ? PA 9AX 301 A 1 
HETATM 14 P PB 9AX . . . D 3 -9.771 -17.423 18.23 1 189.3 ? PB 9AX 301 A 1 
HETATM 15 C C15 9AX . . . D 3 -13.56 -19.77 19.773 1 186.55 ? C15 9AX 301 A 1 
HETATM 16 C C14 9AX . . . D 3 -14.552 -18.923 20.574 1 185.4 ? C14 9AX 301 A 1 
HETATM 17 C C13 9AX . . . D 3 -15.461 -19.733 21.499 1 184.45 ? C13 9AX 301 A 1 
HETATM 18 C C16 9AX . . . D 3 -15.306 -21.254 21.558 1 184.18 ? C16 9AX 301 A 1 
HETATM 19 C C12 9AX . . . D 3 -16.542 -19.04 22.33 1 183.52 ? C12 9AX 301 A 1 
HETATM 20 C C11 9AX . . . D 3 -17.896 -19.576 21.864 1 182.5 ? C11 9AX 301 A 1 
HETATM 21 C C9 9AX . . . D 3 -18.848 -18.444 21.466 1 181.93 ? C9 9AX 301 A 1 
HETATM 22 C C20 9AX . . . D 3 -20.03 -19.081 20.738 1 182.36 ? C20 9AX 301 A 1 
HETATM 23 C C10 9AX . . . D 3 -19.296 -17.72 22.723 1 181.62 ? C10 9AX 301 A 1 
HETATM 24 C C1 9AX . . . D 3 -20.029 -18.652 23.674 1 181.3 ? C1 9AX 301 A 1 
HETATM 25 C C3 9AX . . . D 3 -20.458 -16.446 24.774 1 180.84 ? C3 9AX 301 A 1 
HETATM 26 C C18 9AX . . . D 3 -21.119 -14.601 23.256 1 180.74 ? C18 9AX 301 A 1 
HETATM 27 C C19 9AX . . . D 3 -22.323 -16.772 23.127 1 180.4 ? C19 9AX 301 A 1 
HETATM 28 C C8 9AX . . . D 3 -18.183 -17.439 20.538 1 181.6 ? C8 9AX 301 A 1 
HETATM 29 C C17 9AX . . . D 3 -17.716 -18.102 19.243 1 181.02 ? C17 9AX 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#