data_3WQS # _model_server_result.job_id ORhByTWjVSb7pxOYxVw9gw _model_server_result.datetime_utc '2024-11-24 12:10:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3WQS # _exptl.entry_id 3WQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WQS _cell.length_a 91.55 _cell.length_b 91.55 _cell.length_c 107.868 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -35.956 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 231 B ASP 231 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc2 A OE1 GLU 233 B GLU 233 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc3 A OE2 GLU 233 B GLU 233 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc4 A OE2 GLU 315 B GLU 315 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 C MG MG . B MG 502 1_555 D O18 KBK . B KBK 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 C MG MG . B MG 502 1_555 D O15 KBK . B KBK 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 273 n n PA O2A NDP sing 274 n n PA O5B NDP sing 275 n n PA O3 NDP sing 276 n n O2A HOA2 NDP sing 277 n n O5B C5B NDP sing 278 n n C5B C4B NDP sing 279 n n C5B H51A NDP sing 280 n n C5B H52A NDP sing 281 n n C4B O4B NDP sing 282 n n C4B C3B NDP sing 283 n n C4B H4B NDP sing 284 n n O4B C1B NDP sing 285 n n C3B O3B NDP sing 286 n n C3B C2B NDP sing 287 n n C3B H3B NDP sing 288 n n O3B HO3A NDP sing 289 n n C2B O2B NDP sing 290 n n C2B C1B NDP sing 291 n n C2B H2B NDP sing 292 n n O2B P2B NDP sing 293 n n C1B N9A NDP sing 294 n n C1B H1B NDP sing 295 n n N9A C8A NDP sing 296 n y N9A C4A NDP sing 297 n y C8A N7A NDP doub 298 n y C8A H8A NDP sing 299 n n N7A C5A NDP sing 300 n y C5A C6A NDP sing 301 n y C5A C4A NDP doub 302 n y C6A N6A NDP sing 303 n n C6A N1A NDP doub 304 n y N6A H61A NDP sing 305 n n N6A H62A NDP sing 306 n n N1A C2A NDP sing 307 n y C2A N3A NDP doub 308 n y C2A H2A NDP sing 309 n n N3A C4A NDP sing 310 n y O3 PN NDP sing 311 n n PN O1N NDP doub 312 n n PN O2N NDP sing 313 n n PN O5D NDP sing 314 n n O2N H21N NDP sing 315 n n O5D C5D NDP sing 316 n n C5D C4D NDP sing 317 n n C5D H51N NDP sing 318 n n C5D H52N NDP sing 319 n n C4D O4D NDP sing 320 n n C4D C3D NDP sing 321 n n C4D H4D NDP sing 322 n n O4D C1D NDP sing 323 n n C3D O3D NDP sing 324 n n C3D C2D NDP sing 325 n n C3D H3D NDP sing 326 n n O3D HO3N NDP sing 327 n n C2D O2D NDP sing 328 n n C2D C1D NDP sing 329 n n C2D H2D NDP sing 330 n n O2D HO2N NDP sing 331 n n C1D N1N NDP sing 332 n n C1D H1D NDP sing 333 n n N1N C2N NDP sing 334 n n N1N C6N NDP sing 335 n n C2N C3N NDP doub 336 n n C2N H2N NDP sing 337 n n C3N C7N NDP sing 338 n n C3N C4N NDP sing 339 n n C7N O7N NDP doub 340 n n C7N N7N NDP sing 341 n n N7N H71N NDP sing 342 n n N7N H72N NDP sing 343 n n C4N C5N NDP sing 344 n n C4N H41N NDP sing 345 n n C4N H42N NDP sing 346 n n C5N C6N NDP doub 347 n n C5N H5N NDP sing 348 n n C6N H6N NDP sing 349 n n P2B O1X NDP doub 350 n n P2B O2X NDP sing 351 n n P2B O3X NDP sing 352 n n O2X HOP2 NDP sing 353 n n O3X HOP3 NDP sing 354 n n # _atom_sites.entry_id 3WQS _atom_sites.fract_transf_matrix[1][1] 0.010923 _atom_sites.fract_transf_matrix[1][2] 0.006306 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP B 1 501 501 NDP NDP . C 3 MG B 1 502 502 MG MG . D 4 KBK B 1 503 503 KBK KBK . E 5 HOH B 1 601 601 HOH HOH . E 5 HOH B 2 602 602 HOH HOH . E 5 HOH B 3 603 603 HOH HOH . E 5 HOH B 4 604 604 HOH HOH . E 5 HOH B 5 605 605 HOH HOH . E 5 HOH B 6 606 606 HOH HOH . E 5 HOH B 7 607 607 HOH HOH . E 5 HOH B 8 608 608 HOH HOH . E 5 HOH B 9 609 609 HOH HOH . E 5 HOH B 10 610 610 HOH HOH . E 5 HOH B 11 611 611 HOH HOH . E 5 HOH B 12 612 612 HOH HOH . E 5 HOH B 13 613 613 HOH HOH . E 5 HOH B 14 614 614 HOH HOH . E 5 HOH B 15 615 615 HOH HOH . E 5 HOH B 16 616 616 HOH HOH . E 5 HOH B 17 617 617 HOH HOH . E 5 HOH B 18 618 618 HOH HOH . E 5 HOH B 19 619 619 HOH HOH . E 5 HOH B 20 620 620 HOH HOH . E 5 HOH B 21 621 621 HOH HOH . E 5 HOH B 22 622 622 HOH HOH . E 5 HOH B 23 623 623 HOH HOH . E 5 HOH B 24 624 624 HOH HOH . E 5 HOH B 25 625 625 HOH HOH . E 5 HOH B 26 626 626 HOH HOH . E 5 HOH B 27 627 627 HOH HOH . E 5 HOH B 28 628 628 HOH HOH . E 5 HOH B 29 629 629 HOH HOH . E 5 HOH B 30 630 630 HOH HOH . E 5 HOH B 31 631 631 HOH HOH . E 5 HOH B 32 632 632 HOH HOH . E 5 HOH B 33 633 633 HOH HOH . E 5 HOH B 34 634 634 HOH HOH . E 5 HOH B 35 635 635 HOH HOH . E 5 HOH B 36 636 636 HOH HOH . E 5 HOH B 37 637 637 HOH HOH . E 5 HOH B 38 638 638 HOH HOH . E 5 HOH B 39 639 639 HOH HOH . E 5 HOH B 40 640 640 HOH HOH . E 5 HOH B 41 641 641 HOH HOH . E 5 HOH B 42 642 642 HOH HOH . E 5 HOH B 43 643 643 HOH HOH . E 5 HOH B 44 644 644 HOH HOH . E 5 HOH B 45 645 645 HOH HOH . E 5 HOH B 46 646 646 HOH HOH . E 5 HOH B 47 647 647 HOH HOH . E 5 HOH B 48 648 648 HOH HOH . E 5 HOH B 49 649 649 HOH HOH . E 5 HOH B 50 650 650 HOH HOH . E 5 HOH B 51 651 651 HOH HOH . E 5 HOH B 52 652 652 HOH HOH . E 5 HOH B 53 653 653 HOH HOH . E 5 HOH B 54 654 654 HOH HOH . E 5 HOH B 55 655 655 HOH HOH . E 5 HOH B 56 656 656 HOH HOH . E 5 HOH B 57 657 657 HOH HOH . E 5 HOH B 58 658 658 HOH HOH . E 5 HOH B 59 659 659 HOH HOH . E 5 HOH B 60 660 660 HOH HOH . E 5 HOH B 61 661 661 HOH HOH . E 5 HOH B 62 662 662 HOH HOH . E 5 HOH B 63 663 663 HOH HOH . E 5 HOH B 64 664 664 HOH HOH . E 5 HOH B 65 665 665 HOH HOH . E 5 HOH B 66 666 666 HOH HOH . E 5 HOH B 67 667 667 HOH HOH . E 5 HOH B 68 668 668 HOH HOH . E 5 HOH B 69 669 669 HOH HOH . E 5 HOH B 70 670 670 HOH HOH . E 5 HOH B 71 671 671 HOH HOH . E 5 HOH B 72 672 672 HOH HOH . E 5 HOH B 73 673 673 HOH HOH . E 5 HOH B 74 674 674 HOH HOH . E 5 HOH B 75 675 675 HOH HOH . E 5 HOH B 76 676 676 HOH HOH . E 5 HOH B 77 677 677 HOH HOH . E 5 HOH B 78 678 678 HOH HOH . E 5 HOH B 79 679 679 HOH HOH . E 5 HOH B 80 680 680 HOH HOH . E 5 HOH B 81 681 681 HOH HOH . E 5 HOH B 82 682 682 HOH HOH . E 5 HOH B 83 683 683 HOH HOH . E 5 HOH B 84 684 684 HOH HOH . E 5 HOH B 85 685 685 HOH HOH . E 5 HOH B 86 686 686 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 36.047 -2.397 11.158 1 44.52 ? PA NDP 501 B 1 HETATM 2 O O1A NDP . . . B 2 36.725 -3.175 12.179 1 43.92 ? O1A NDP 501 B 1 HETATM 3 O O2A NDP . . . B 2 36.763 -1.187 10.691 1 49.64 ? O2A NDP 501 B 1 HETATM 4 O O5B NDP . . . B 2 34.603 -2.011 11.701 1 48.56 ? O5B NDP 501 B 1 HETATM 5 C C5B NDP . . . B 2 33.757 -2.97 12.268 1 48.85 ? C5B NDP 501 B 1 HETATM 6 C C4B NDP . . . B 2 32.53 -2.184 12.669 1 52.2 ? C4B NDP 501 B 1 HETATM 7 O O4B NDP . . . B 2 31.523 -3.109 13.012 1 53.55 ? O4B NDP 501 B 1 HETATM 8 C C3B NDP . . . B 2 32.787 -1.323 13.915 1 53.03 ? C3B NDP 501 B 1 HETATM 9 O O3B NDP . . . B 2 31.892 -0.227 13.908 1 51.46 ? O3B NDP 501 B 1 HETATM 10 C C2B NDP . . . B 2 32.402 -2.278 15.031 1 54.13 ? C2B NDP 501 B 1 HETATM 11 O O2B NDP . . . B 2 31.979 -1.633 16.202 1 53.62 ? O2B NDP 501 B 1 HETATM 12 C C1B NDP . . . B 2 31.186 -2.903 14.379 1 55.01 ? C1B NDP 501 B 1 HETATM 13 N N9A NDP . . . B 2 30.745 -4.113 15.08 1 55.43 ? N9A NDP 501 B 1 HETATM 14 C C8A NDP . . . B 2 31.472 -5.236 15.433 1 55.17 ? C8A NDP 501 B 1 HETATM 15 N N7A NDP . . . B 2 30.617 -6.079 16.054 1 54.76 ? N7A NDP 501 B 1 HETATM 16 C C5A NDP . . . B 2 29.38 -5.495 16.103 1 53.44 ? C5A NDP 501 B 1 HETATM 17 C C6A NDP . . . B 2 28.153 -5.907 16.623 1 53.83 ? C6A NDP 501 B 1 HETATM 18 N N6A NDP . . . B 2 28.03 -7.14 17.122 1 55.1 ? N6A NDP 501 B 1 HETATM 19 N N1A NDP . . . B 2 27.048 -5.071 16.513 1 54.1 ? N1A NDP 501 B 1 HETATM 20 C C2A NDP . . . B 2 27.159 -3.829 15.887 1 53.02 ? C2A NDP 501 B 1 HETATM 21 N N3A NDP . . . B 2 28.38 -3.42 15.378 1 51.81 ? N3A NDP 501 B 1 HETATM 22 C C4A NDP . . . B 2 29.454 -4.251 15.492 1 53.35 ? C4A NDP 501 B 1 HETATM 23 O O3 NDP . . . B 2 35.748 -3.384 9.902 1 47.1 ? O3 NDP 501 B 1 HETATM 24 P PN NDP . . . B 2 35.544 -2.859 8.391 1 45.18 ? PN NDP 501 B 1 HETATM 25 O O1N NDP . . . B 2 36.885 -2.927 7.746 1 42.1 ? O1N NDP 501 B 1 HETATM 26 O O2N NDP . . . B 2 34.694 -1.628 8.361 1 42.64 ? O2N NDP 501 B 1 HETATM 27 O O5D NDP . . . B 2 34.652 -4.061 7.784 1 47.55 ? O5D NDP 501 B 1 HETATM 28 C C5D NDP . . . B 2 33.233 -4.038 7.764 1 44.71 ? C5D NDP 501 B 1 HETATM 29 C C4D NDP . . . B 2 32.791 -5.121 6.799 1 43.23 ? C4D NDP 501 B 1 HETATM 30 O O4D NDP . . . B 2 32.862 -4.602 5.498 1 42.59 ? O4D NDP 501 B 1 HETATM 31 C C3D NDP . . . B 2 33.712 -6.325 6.836 1 43.55 ? C3D NDP 501 B 1 HETATM 32 O O3D NDP . . . B 2 32.912 -7.489 6.723 1 43.71 ? O3D NDP 501 B 1 HETATM 33 C C2D NDP . . . B 2 34.613 -6.163 5.618 1 43.73 ? C2D NDP 501 B 1 HETATM 34 O O2D NDP . . . B 2 34.978 -7.391 5.025 1 42.68 ? O2D NDP 501 B 1 HETATM 35 C C1D NDP . . . B 2 33.721 -5.381 4.677 1 43 ? C1D NDP 501 B 1 HETATM 36 N N1N NDP . . . B 2 34.505 -4.525 3.762 1 43.66 ? N1N NDP 501 B 1 HETATM 37 C C2N NDP . . . B 2 35.286 -3.524 4.296 1 41.31 ? C2N NDP 501 B 1 HETATM 38 C C3N NDP . . . B 2 36.049 -2.692 3.483 1 42.7 ? C3N NDP 501 B 1 HETATM 39 C C7N NDP . . . B 2 36.861 -1.58 4.084 1 41.61 ? C7N NDP 501 B 1 HETATM 40 O O7N NDP . . . B 2 37.218 -0.59 3.176 1 42.01 ? O7N NDP 501 B 1 HETATM 41 N N7N NDP . . . B 2 37.173 -1.497 5.378 1 37.3 ? N7N NDP 501 B 1 HETATM 42 C C4N NDP . . . B 2 36.043 -2.832 1.968 1 42.45 ? C4N NDP 501 B 1 HETATM 43 C C5N NDP . . . B 2 35.129 -3.951 1.519 1 44.23 ? C5N NDP 501 B 1 HETATM 44 C C6N NDP . . . B 2 34.412 -4.738 2.411 1 40.53 ? C6N NDP 501 B 1 HETATM 45 P P2B NDP . . . B 2 33.014 -1.128 17.332 1 51.26 ? P2B NDP 501 B 1 HETATM 46 O O1X NDP . . . B 2 33.694 0.12 16.804 1 53.13 ? O1X NDP 501 B 1 HETATM 47 O O2X NDP . . . B 2 32.129 -0.685 18.471 1 52.54 ? O2X NDP 501 B 1 HETATM 48 O O3X NDP . . . B 2 34.041 -2.128 17.741 1 47.37 ? O3X NDP 501 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #