data_3WQS
#
_model_server_result.job_id            YBtUDb85M5KGUJaiHVJ7vQ 
_model_server_result.datetime_utc      '2024-11-28 05:06:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wqs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    3WQS 
#
_exptl.entry_id    3WQS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              305.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(R)-{2-[hydroxy(methyl)amino]-2-oxoethoxy}(4-methoxyphenyl)methyl]phosphonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WQS 
_cell.length_a            91.55 
_cell.length_b            91.55 
_cell.length_c            107.868 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WQS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -35.956 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 231 B ASP 231 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc2 A OE1 GLU 233 B GLU 233 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc3 A OE2 GLU 233 B GLU 233 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc4 A OE2 GLU 315 B GLU 315 1_555 C MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 C MG MG . B MG 502 1_555 D O18 KBK . B KBK 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc6 C MG MG . B MG 502 1_555 D O15 KBK . B KBK 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
#
_chem_comp.formula           'C11 H16 N O7 P' 
_chem_comp.formula_weight    305.221 
_chem_comp.id                KBK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(R)-{2-[hydroxy(methyl)amino]-2-oxoethoxy}(4-methoxyphenyl)methyl]phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 P8 KBK doub 173 n n 
C5 C4 KBK doub 174 n y 
C5 C6 KBK sing 175 n y 
C4 C3 KBK sing 176 n y 
O19 C6 KBK sing 177 n n 
O19 C20 KBK sing 178 n n 
P8 O10 KBK sing 179 n n 
P8 O9 KBK sing 180 n n 
P8 C7 KBK sing 181 n n 
C6 C1 KBK doub 182 n y 
O18 N16 KBK sing 183 n n 
C3 C7 KBK sing 184 n n 
C3 C2 KBK doub 185 n y 
C7 O12 KBK sing 186 n n 
C17 N16 KBK sing 187 n n 
N16 C14 KBK sing 188 n n 
C1 C2 KBK sing 189 n y 
O15 C14 KBK doub 190 n n 
C14 C13 KBK sing 191 n n 
O12 C13 KBK sing 192 n n 
O9 H1 KBK sing 193 n n 
O10 H2 KBK sing 194 n n 
C7 H3 KBK sing 195 n n 
C13 H4 KBK sing 196 n n 
C13 H5 KBK sing 197 n n 
C17 H6 KBK sing 198 n n 
C17 H7 KBK sing 199 n n 
C17 H8 KBK sing 200 n n 
O18 H9 KBK sing 201 n n 
C4 H10 KBK sing 202 n n 
C5 H11 KBK sing 203 n n 
C20 H12 KBK sing 204 n n 
C20 H13 KBK sing 205 n n 
C20 H14 KBK sing 206 n n 
C1 H15 KBK sing 207 n n 
C2 H16 KBK sing 208 n n 
#
_atom_sites.entry_id                     3WQS 
_atom_sites.fract_transf_matrix[1][1]    0.010923 
_atom_sites.fract_transf_matrix[1][2]    0.006306 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012613 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP B 1 501 501 NDP NDP . 
C 3 MG B 1 502 502 MG MG . 
D 4 KBK B 1 503 503 KBK KBK . 
E 5 HOH B 1 601 601 HOH HOH . 
E 5 HOH B 2 602 602 HOH HOH . 
E 5 HOH B 3 603 603 HOH HOH . 
E 5 HOH B 4 604 604 HOH HOH . 
E 5 HOH B 5 605 605 HOH HOH . 
E 5 HOH B 6 606 606 HOH HOH . 
E 5 HOH B 7 607 607 HOH HOH . 
E 5 HOH B 8 608 608 HOH HOH . 
E 5 HOH B 9 609 609 HOH HOH . 
E 5 HOH B 10 610 610 HOH HOH . 
E 5 HOH B 11 611 611 HOH HOH . 
E 5 HOH B 12 612 612 HOH HOH . 
E 5 HOH B 13 613 613 HOH HOH . 
E 5 HOH B 14 614 614 HOH HOH . 
E 5 HOH B 15 615 615 HOH HOH . 
E 5 HOH B 16 616 616 HOH HOH . 
E 5 HOH B 17 617 617 HOH HOH . 
E 5 HOH B 18 618 618 HOH HOH . 
E 5 HOH B 19 619 619 HOH HOH . 
E 5 HOH B 20 620 620 HOH HOH . 
E 5 HOH B 21 621 621 HOH HOH . 
E 5 HOH B 22 622 622 HOH HOH . 
E 5 HOH B 23 623 623 HOH HOH . 
E 5 HOH B 24 624 624 HOH HOH . 
E 5 HOH B 25 625 625 HOH HOH . 
E 5 HOH B 26 626 626 HOH HOH . 
E 5 HOH B 27 627 627 HOH HOH . 
E 5 HOH B 28 628 628 HOH HOH . 
E 5 HOH B 29 629 629 HOH HOH . 
E 5 HOH B 30 630 630 HOH HOH . 
E 5 HOH B 31 631 631 HOH HOH . 
E 5 HOH B 32 632 632 HOH HOH . 
E 5 HOH B 33 633 633 HOH HOH . 
E 5 HOH B 34 634 634 HOH HOH . 
E 5 HOH B 35 635 635 HOH HOH . 
E 5 HOH B 36 636 636 HOH HOH . 
E 5 HOH B 37 637 637 HOH HOH . 
E 5 HOH B 38 638 638 HOH HOH . 
E 5 HOH B 39 639 639 HOH HOH . 
E 5 HOH B 40 640 640 HOH HOH . 
E 5 HOH B 41 641 641 HOH HOH . 
E 5 HOH B 42 642 642 HOH HOH . 
E 5 HOH B 43 643 643 HOH HOH . 
E 5 HOH B 44 644 644 HOH HOH . 
E 5 HOH B 45 645 645 HOH HOH . 
E 5 HOH B 46 646 646 HOH HOH . 
E 5 HOH B 47 647 647 HOH HOH . 
E 5 HOH B 48 648 648 HOH HOH . 
E 5 HOH B 49 649 649 HOH HOH . 
E 5 HOH B 50 650 650 HOH HOH . 
E 5 HOH B 51 651 651 HOH HOH . 
E 5 HOH B 52 652 652 HOH HOH . 
E 5 HOH B 53 653 653 HOH HOH . 
E 5 HOH B 54 654 654 HOH HOH . 
E 5 HOH B 55 655 655 HOH HOH . 
E 5 HOH B 56 656 656 HOH HOH . 
E 5 HOH B 57 657 657 HOH HOH . 
E 5 HOH B 58 658 658 HOH HOH . 
E 5 HOH B 59 659 659 HOH HOH . 
E 5 HOH B 60 660 660 HOH HOH . 
E 5 HOH B 61 661 661 HOH HOH . 
E 5 HOH B 62 662 662 HOH HOH . 
E 5 HOH B 63 663 663 HOH HOH . 
E 5 HOH B 64 664 664 HOH HOH . 
E 5 HOH B 65 665 665 HOH HOH . 
E 5 HOH B 66 666 666 HOH HOH . 
E 5 HOH B 67 667 667 HOH HOH . 
E 5 HOH B 68 668 668 HOH HOH . 
E 5 HOH B 69 669 669 HOH HOH . 
E 5 HOH B 70 670 670 HOH HOH . 
E 5 HOH B 71 671 671 HOH HOH . 
E 5 HOH B 72 672 672 HOH HOH . 
E 5 HOH B 73 673 673 HOH HOH . 
E 5 HOH B 74 674 674 HOH HOH . 
E 5 HOH B 75 675 675 HOH HOH . 
E 5 HOH B 76 676 676 HOH HOH . 
E 5 HOH B 77 677 677 HOH HOH . 
E 5 HOH B 78 678 678 HOH HOH . 
E 5 HOH B 79 679 679 HOH HOH . 
E 5 HOH B 80 680 680 HOH HOH . 
E 5 HOH B 81 681 681 HOH HOH . 
E 5 HOH B 82 682 682 HOH HOH . 
E 5 HOH B 83 683 683 HOH HOH . 
E 5 HOH B 84 684 684 HOH HOH . 
E 5 HOH B 85 685 685 HOH HOH . 
E 5 HOH B 86 686 686 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 KBK . . . D 4 43.639 -6.626 -1.624 1 45.21 ? O9 KBK 503 B 1 
HETATM 2 P P8 KBK . . . D 4 42.238 -6.613 -2.192 1 43.53 ? P8 KBK 503 B 1 
HETATM 3 O O11 KBK . . . D 4 42.212 -6.45 -3.692 1 44.52 ? O11 KBK 503 B 1 
HETATM 4 O O10 KBK . . . D 4 41.518 -7.865 -1.722 1 49.9 ? O10 KBK 503 B 1 
HETATM 5 C C7 KBK . . . D 4 41.259 -5.212 -1.565 1 45.97 ? C7 KBK 503 B 1 
HETATM 6 O O12 KBK . . . D 4 40.849 -5.461 -0.211 1 43.98 ? O12 KBK 503 B 1 
HETATM 7 C C13 KBK . . . D 4 39.79 -4.603 0.298 1 42.24 ? C13 KBK 503 B 1 
HETATM 8 C C14 KBK . . . D 4 38.517 -4.684 -0.528 1 41.94 ? C14 KBK 503 B 1 
HETATM 9 N N16 KBK . . . D 4 37.994 -3.658 -1.199 1 43.36 ? N16 KBK 503 B 1 
HETATM 10 C C17 KBK . . . D 4 38.527 -2.301 -1.302 1 39.14 ? C17 KBK 503 B 1 
HETATM 11 O O18 KBK . . . D 4 36.819 -3.943 -1.924 1 40.9 ? O18 KBK 503 B 1 
HETATM 12 O O15 KBK . . . D 4 37.932 -5.723 -0.593 1 42.85 ? O15 KBK 503 B 1 
HETATM 13 C C3 KBK . . . D 4 41.96 -3.893 -1.709 1 49.68 ? C3 KBK 503 B 1 
HETATM 14 C C4 KBK . . . D 4 41.51 -2.978 -2.665 1 50.29 ? C4 KBK 503 B 1 
HETATM 15 C C5 KBK . . . D 4 42.137 -1.738 -2.815 1 51.68 ? C5 KBK 503 B 1 
HETATM 16 C C6 KBK . . . D 4 43.227 -1.374 -2.023 1 52.48 ? C6 KBK 503 B 1 
HETATM 17 O O19 KBK . . . D 4 43.819 -0.134 -2.208 1 53.08 ? O19 KBK 503 B 1 
HETATM 18 C C20 KBK . . . D 4 45.179 0.138 -1.886 1 52.49 ? C20 KBK 503 B 1 
HETATM 19 C C1 KBK . . . D 4 43.673 -2.276 -1.053 1 53.61 ? C1 KBK 503 B 1 
HETATM 20 C C2 KBK . . . D 4 43.045 -3.524 -0.899 1 52.79 ? C2 KBK 503 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#