data_3WR7 # _model_server_result.job_id hHOjcq9eKopcH_t2ct5N1Q _model_server_result.datetime_utc '2024-11-25 23:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 3WR7 # _exptl.entry_id 3WR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WR7 _cell.length_a 148.688 _cell.length_b 148.688 _cell.length_c 148.688 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 3WR7 _atom_sites.fract_transf_matrix[1][1] 0.006725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SPD A 1 201 201 SPD SPD . F 3 COA A 1 202 202 COA COA . G 2 SPD C 1 201 201 SPD SPD . H 3 COA C 1 202 202 COA COA . I 2 SPD B 1 201 201 SPD SPD . J 3 COA B 1 202 202 COA COA . K 2 SPD D 1 201 201 SPD SPD . L 3 COA D 1 202 202 COA COA . M 4 HOH A 1 301 3 HOH HOH . M 4 HOH A 2 302 7 HOH HOH . M 4 HOH A 3 303 16 HOH HOH . M 4 HOH A 4 304 18 HOH HOH . M 4 HOH A 5 305 19 HOH HOH . M 4 HOH A 6 306 21 HOH HOH . M 4 HOH A 7 307 23 HOH HOH . M 4 HOH A 8 308 24 HOH HOH . M 4 HOH A 9 309 26 HOH HOH . M 4 HOH A 10 310 27 HOH HOH . M 4 HOH A 11 311 29 HOH HOH . M 4 HOH A 12 312 32 HOH HOH . M 4 HOH A 13 313 37 HOH HOH . M 4 HOH A 14 314 46 HOH HOH . M 4 HOH A 15 315 53 HOH HOH . M 4 HOH A 16 316 59 HOH HOH . M 4 HOH A 17 317 60 HOH HOH . M 4 HOH A 18 318 61 HOH HOH . M 4 HOH A 19 319 62 HOH HOH . M 4 HOH A 20 320 63 HOH HOH . M 4 HOH A 21 321 64 HOH HOH . M 4 HOH A 22 322 69 HOH HOH . M 4 HOH A 23 323 75 HOH HOH . M 4 HOH A 24 324 76 HOH HOH . M 4 HOH A 25 325 78 HOH HOH . M 4 HOH A 26 326 83 HOH HOH . M 4 HOH A 27 327 94 HOH HOH . M 4 HOH A 28 328 95 HOH HOH . M 4 HOH A 29 329 96 HOH HOH . M 4 HOH A 30 330 97 HOH HOH . M 4 HOH A 31 331 98 HOH HOH . M 4 HOH A 32 332 99 HOH HOH . M 4 HOH A 33 333 100 HOH HOH . M 4 HOH A 34 334 101 HOH HOH . M 4 HOH A 35 335 103 HOH HOH . M 4 HOH A 36 336 129 HOH HOH . M 4 HOH A 37 337 131 HOH HOH . M 4 HOH A 38 338 133 HOH HOH . M 4 HOH A 39 339 136 HOH HOH . M 4 HOH A 40 340 141 HOH HOH . M 4 HOH A 41 341 145 HOH HOH . M 4 HOH A 42 342 153 HOH HOH . M 4 HOH A 43 343 154 HOH HOH . M 4 HOH A 44 344 161 HOH HOH . M 4 HOH A 45 345 162 HOH HOH . M 4 HOH A 46 346 163 HOH HOH . M 4 HOH A 47 347 164 HOH HOH . M 4 HOH A 48 348 166 HOH HOH . N 4 HOH C 1 301 1 HOH HOH . N 4 HOH C 2 302 2 HOH HOH . N 4 HOH C 3 303 11 HOH HOH . N 4 HOH C 4 304 12 HOH HOH . N 4 HOH C 5 305 14 HOH HOH . N 4 HOH C 6 306 17 HOH HOH . N 4 HOH C 7 307 22 HOH HOH . N 4 HOH C 8 308 30 HOH HOH . N 4 HOH C 9 309 33 HOH HOH . N 4 HOH C 10 310 34 HOH HOH . N 4 HOH C 11 311 38 HOH HOH . N 4 HOH C 12 312 44 HOH HOH . N 4 HOH C 13 313 47 HOH HOH . N 4 HOH C 14 314 48 HOH HOH . N 4 HOH C 15 315 51 HOH HOH . N 4 HOH C 16 316 52 HOH HOH . N 4 HOH C 17 317 77 HOH HOH . N 4 HOH C 18 318 79 HOH HOH . N 4 HOH C 19 319 80 HOH HOH . N 4 HOH C 20 320 81 HOH HOH . N 4 HOH C 21 321 102 HOH HOH . N 4 HOH C 22 322 104 HOH HOH . N 4 HOH C 23 323 105 HOH HOH . N 4 HOH C 24 324 106 HOH HOH . N 4 HOH C 25 325 107 HOH HOH . N 4 HOH C 26 326 108 HOH HOH . N 4 HOH C 27 327 109 HOH HOH . N 4 HOH C 28 328 110 HOH HOH . N 4 HOH C 29 329 111 HOH HOH . N 4 HOH C 30 330 112 HOH HOH . N 4 HOH C 31 331 114 HOH HOH . N 4 HOH C 32 332 126 HOH HOH . N 4 HOH C 33 333 127 HOH HOH . N 4 HOH C 34 334 130 HOH HOH . N 4 HOH C 35 335 137 HOH HOH . N 4 HOH C 36 336 138 HOH HOH . N 4 HOH C 37 337 140 HOH HOH . N 4 HOH C 38 338 142 HOH HOH . N 4 HOH C 39 339 155 HOH HOH . N 4 HOH C 40 340 156 HOH HOH . N 4 HOH C 41 341 159 HOH HOH . N 4 HOH C 42 342 160 HOH HOH . O 4 HOH B 1 301 5 HOH HOH . O 4 HOH B 2 302 6 HOH HOH . O 4 HOH B 3 303 8 HOH HOH . O 4 HOH B 4 304 25 HOH HOH . O 4 HOH B 5 305 28 HOH HOH . O 4 HOH B 6 306 31 HOH HOH . O 4 HOH B 7 307 36 HOH HOH . O 4 HOH B 8 308 39 HOH HOH . O 4 HOH B 9 309 40 HOH HOH . O 4 HOH B 10 310 41 HOH HOH . O 4 HOH B 11 311 45 HOH HOH . O 4 HOH B 12 312 57 HOH HOH . O 4 HOH B 13 313 58 HOH HOH . O 4 HOH B 14 314 65 HOH HOH . O 4 HOH B 15 315 66 HOH HOH . O 4 HOH B 16 316 67 HOH HOH . O 4 HOH B 17 317 82 HOH HOH . O 4 HOH B 18 318 84 HOH HOH . O 4 HOH B 19 319 85 HOH HOH . O 4 HOH B 20 320 86 HOH HOH . O 4 HOH B 21 321 87 HOH HOH . O 4 HOH B 22 322 88 HOH HOH . O 4 HOH B 23 323 115 HOH HOH . O 4 HOH B 24 324 116 HOH HOH . O 4 HOH B 25 325 117 HOH HOH . O 4 HOH B 26 326 118 HOH HOH . O 4 HOH B 27 327 119 HOH HOH . O 4 HOH B 28 328 120 HOH HOH . O 4 HOH B 29 329 121 HOH HOH . O 4 HOH B 30 330 123 HOH HOH . O 4 HOH B 31 331 128 HOH HOH . O 4 HOH B 32 332 132 HOH HOH . O 4 HOH B 33 333 134 HOH HOH . O 4 HOH B 34 334 135 HOH HOH . O 4 HOH B 35 335 146 HOH HOH . O 4 HOH B 36 336 147 HOH HOH . O 4 HOH B 37 337 148 HOH HOH . O 4 HOH B 38 338 149 HOH HOH . O 4 HOH B 39 339 150 HOH HOH . O 4 HOH B 40 340 151 HOH HOH . O 4 HOH B 41 341 152 HOH HOH . O 4 HOH B 42 342 165 HOH HOH . P 4 HOH D 1 301 4 HOH HOH . P 4 HOH D 2 302 9 HOH HOH . P 4 HOH D 3 303 10 HOH HOH . P 4 HOH D 4 304 13 HOH HOH . P 4 HOH D 5 305 15 HOH HOH . P 4 HOH D 6 306 20 HOH HOH . P 4 HOH D 7 307 35 HOH HOH . P 4 HOH D 8 308 42 HOH HOH . P 4 HOH D 9 309 43 HOH HOH . P 4 HOH D 10 310 49 HOH HOH . P 4 HOH D 11 311 50 HOH HOH . P 4 HOH D 12 312 54 HOH HOH . P 4 HOH D 13 313 55 HOH HOH . P 4 HOH D 14 314 56 HOH HOH . P 4 HOH D 15 315 68 HOH HOH . P 4 HOH D 16 316 70 HOH HOH . P 4 HOH D 17 317 71 HOH HOH . P 4 HOH D 18 318 72 HOH HOH . P 4 HOH D 19 319 73 HOH HOH . P 4 HOH D 20 320 74 HOH HOH . P 4 HOH D 21 321 89 HOH HOH . P 4 HOH D 22 322 90 HOH HOH . P 4 HOH D 23 323 91 HOH HOH . P 4 HOH D 24 324 92 HOH HOH . P 4 HOH D 25 325 93 HOH HOH . P 4 HOH D 26 326 113 HOH HOH . P 4 HOH D 27 327 122 HOH HOH . P 4 HOH D 28 328 124 HOH HOH . P 4 HOH D 29 329 125 HOH HOH . P 4 HOH D 30 330 139 HOH HOH . P 4 HOH D 31 331 143 HOH HOH . P 4 HOH D 32 332 144 HOH HOH . P 4 HOH D 33 333 157 HOH HOH . P 4 HOH D 34 334 158 HOH HOH . P 4 HOH D 35 335 167 HOH HOH . P 4 HOH D 36 336 168 HOH HOH . P 4 HOH D 37 337 169 HOH HOH . P 4 HOH D 38 338 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . J 3 30.642 93.872 28.949 1 113.43 ? N1A COA 202 B 1 HETATM 2 C C2A COA . . . J 3 31.744 93.858 28.172 1 114.03 ? C2A COA 202 B 1 HETATM 3 N N3A COA . . . J 3 32.977 93.77 28.716 1 114.29 ? N3A COA 202 B 1 HETATM 4 C C4A COA . . . J 3 33.14 93.693 30.076 1 114.85 ? C4A COA 202 B 1 HETATM 5 C C5A COA . . . J 3 32.017 93.705 30.903 1 114.77 ? C5A COA 202 B 1 HETATM 6 C C6A COA . . . J 3 30.75 93.8 30.304 1 113.87 ? C6A COA 202 B 1 HETATM 7 N N6A COA . . . J 3 29.628 93.811 31.063 1 112.94 ? N6A COA 202 B 1 HETATM 8 N N7A COA . . . J 3 32.47 93.618 32.185 1 114.85 ? N7A COA 202 B 1 HETATM 9 C C8A COA . . . J 3 33.829 93.56 32.155 1 114.5 ? C8A COA 202 B 1 HETATM 10 N N9A COA . . . J 3 34.227 93.607 30.868 1 114.7 ? N9A COA 202 B 1 HETATM 11 C C1B COA . . . J 3 35.616 93.554 30.322 1 114.46 ? C1B COA 202 B 1 HETATM 12 C C2B COA . . . J 3 36.735 94.206 31.139 1 114.14 ? C2B COA 202 B 1 HETATM 13 O O2B COA . . . J 3 36.683 95.64 31.148 1 113.96 ? O2B COA 202 B 1 HETATM 14 C C3B COA . . . J 3 37.943 93.591 30.427 1 113.48 ? C3B COA 202 B 1 HETATM 15 O O3B COA . . . J 3 38.194 94.228 29.137 1 113.51 ? O3B COA 202 B 1 HETATM 16 P P3B COA . . . J 3 38.771 93.59 27.721 1 113.46 ? P3B COA 202 B 1 HETATM 17 O O7A COA . . . J 3 37.567 92.975 26.998 1 111.67 ? O7A COA 202 B 1 HETATM 18 O O8A COA . . . J 3 39.369 94.75 26.943 1 112.43 ? O8A COA 202 B 1 HETATM 19 O O9A COA . . . J 3 39.855 92.618 28.161 1 112.69 ? O9A COA 202 B 1 HETATM 20 C C4B COA . . . J 3 37.479 92.131 30.297 1 113.02 ? C4B COA 202 B 1 HETATM 21 O O4B COA . . . J 3 36.048 92.189 30.148 1 113.54 ? O4B COA 202 B 1 HETATM 22 C C5B COA . . . J 3 37.874 91.251 31.503 1 112.01 ? C5B COA 202 B 1 HETATM 23 O O5B COA . . . J 3 38.41 89.982 31.087 1 109.48 ? O5B COA 202 B 1 HETATM 24 P P1A COA . . . J 3 39.567 89.163 31.89 1 108.21 ? P1A COA 202 B 1 HETATM 25 O O1A COA . . . J 3 40.263 88.25 30.891 1 105.94 ? O1A COA 202 B 1 HETATM 26 O O2A COA . . . J 3 40.354 90.137 32.754 1 107.73 ? O2A COA 202 B 1 HETATM 27 O O3A COA . . . J 3 38.663 88.276 32.927 1 106.99 ? O3A COA 202 B 1 HETATM 28 P P2A COA . . . J 3 39.172 87.166 34.01 1 103.34 ? P2A COA 202 B 1 HETATM 29 O O4A COA . . . J 3 40.656 86.896 33.787 1 103.14 ? O4A COA 202 B 1 HETATM 30 O O5A COA . . . J 3 38.697 87.568 35.385 1 102.66 ? O5A COA 202 B 1 HETATM 31 O O6A COA . . . J 3 38.25 85.918 33.524 1 103.14 ? O6A COA 202 B 1 HETATM 32 C CBP COA . . . J 3 35.875 85.201 33.283 1 100.52 ? CBP COA 202 B 1 HETATM 33 C CCP COA . . . J 3 37.081 85.426 34.215 1 101.79 ? CCP COA 202 B 1 HETATM 34 C CDP COA . . . J 3 35.686 83.929 32.458 1 99.84 ? CDP COA 202 B 1 HETATM 35 C CEP COA . . . J 3 34.762 86.273 33.196 1 101.14 ? CEP COA 202 B 1 HETATM 36 C CAP COA . . . J 3 35.275 84.585 34.603 1 99.61 ? CAP COA 202 B 1 HETATM 37 O OAP COA . . . J 3 34.249 85.415 35.208 1 98.57 ? OAP COA 202 B 1 HETATM 38 C C9P COA . . . J 3 34.845 83.123 34.567 1 98.91 ? C9P COA 202 B 1 HETATM 39 O O9P COA . . . J 3 35.547 82.169 35.201 1 94.81 ? O9P COA 202 B 1 HETATM 40 N N8P COA . . . J 3 33.734 82.82 33.877 1 99.12 ? N8P COA 202 B 1 HETATM 41 C C7P COA . . . J 3 33.119 81.52 33.651 1 97.8 ? C7P COA 202 B 1 HETATM 42 C C6P COA . . . J 3 32.287 81.741 32.39 1 96.37 ? C6P COA 202 B 1 HETATM 43 C C5P COA . . . J 3 32.881 80.968 31.237 1 94.69 ? C5P COA 202 B 1 HETATM 44 O O5P COA . . . J 3 34.037 81.172 30.907 1 94.97 ? O5P COA 202 B 1 HETATM 45 N N4P COA . . . J 3 32.086 80.09 30.627 1 92.94 ? N4P COA 202 B 1 HETATM 46 C C3P COA . . . J 3 32.438 79.235 29.507 1 92.77 ? C3P COA 202 B 1 HETATM 47 C C2P COA . . . J 3 32.89 77.92 30.135 1 92.31 ? C2P COA 202 B 1 HETATM 48 S S1P COA . . . J 3 31.691 76.602 29.737 1 94.46 ? S1P COA 202 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #