data_3WR8 # _model_server_result.job_id SVuUwi3Av-f6wtj1o0o-ag _model_server_result.datetime_utc '2024-11-22 04:15:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3WR8 # _exptl.entry_id 3WR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.83 _cell.angle_gamma 90 _cell.entry_id 3WR8 _cell.length_a 56.42 _cell.length_b 64.916 _cell.length_c 116.247 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 12 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A OD1 ASN 57 A ASN 57 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A NE2 HIS 59 A HIS 59 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 A OE1 GLU 239 A GLU 239 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc5 C FE FE2 . A FE2 501 1_555 E O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 C FE FE2 . A FE2 501 1_555 E O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B NE2 HIS 12 B HIS 12 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 B OD1 ASN 57 B ASN 57 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 B NE2 HIS 59 B HIS 59 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc10 B OE1 GLU 239 B GLU 239 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc11 D FE FE2 . B FE2 501 1_555 F O HOH . B HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc12 D FE FE2 . B FE2 501 1_555 F O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WR8 _atom_sites.fract_transf_matrix[1][1] 0.017724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001497 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 501 419 FE2 FE2 . D 2 FE2 B 1 501 419 FE2 FE2 . E 3 HOH A 1 601 420 HOH HOH . E 3 HOH A 2 602 421 HOH HOH . E 3 HOH A 3 603 422 HOH HOH . E 3 HOH A 4 604 423 HOH HOH . E 3 HOH A 5 605 424 HOH HOH . E 3 HOH A 6 606 425 HOH HOH . E 3 HOH A 7 607 426 HOH HOH . E 3 HOH A 8 608 427 HOH HOH . E 3 HOH A 9 609 428 HOH HOH . E 3 HOH A 10 610 429 HOH HOH . E 3 HOH A 11 611 430 HOH HOH . E 3 HOH A 12 612 431 HOH HOH . E 3 HOH A 13 613 432 HOH HOH . E 3 HOH A 14 614 433 HOH HOH . E 3 HOH A 15 615 434 HOH HOH . E 3 HOH A 16 616 435 HOH HOH . E 3 HOH A 17 617 436 HOH HOH . E 3 HOH A 18 618 437 HOH HOH . E 3 HOH A 19 619 438 HOH HOH . E 3 HOH A 20 620 439 HOH HOH . E 3 HOH A 21 621 440 HOH HOH . E 3 HOH A 22 622 441 HOH HOH . E 3 HOH A 23 623 442 HOH HOH . E 3 HOH A 24 624 443 HOH HOH . E 3 HOH A 25 625 444 HOH HOH . E 3 HOH A 26 626 445 HOH HOH . E 3 HOH A 27 627 446 HOH HOH . E 3 HOH A 28 628 447 HOH HOH . E 3 HOH A 29 629 448 HOH HOH . E 3 HOH A 30 630 449 HOH HOH . E 3 HOH A 31 631 450 HOH HOH . E 3 HOH A 32 632 451 HOH HOH . E 3 HOH A 33 633 452 HOH HOH . E 3 HOH A 34 634 453 HOH HOH . E 3 HOH A 35 635 454 HOH HOH . E 3 HOH A 36 636 455 HOH HOH . E 3 HOH A 37 637 456 HOH HOH . E 3 HOH A 38 638 457 HOH HOH . E 3 HOH A 39 639 458 HOH HOH . E 3 HOH A 40 640 459 HOH HOH . E 3 HOH A 41 641 460 HOH HOH . E 3 HOH A 42 642 461 HOH HOH . E 3 HOH A 43 643 462 HOH HOH . E 3 HOH A 44 644 463 HOH HOH . E 3 HOH A 45 645 464 HOH HOH . E 3 HOH A 46 646 465 HOH HOH . E 3 HOH A 47 647 466 HOH HOH . E 3 HOH A 48 648 467 HOH HOH . E 3 HOH A 49 649 468 HOH HOH . E 3 HOH A 50 650 469 HOH HOH . E 3 HOH A 51 651 470 HOH HOH . E 3 HOH A 52 652 471 HOH HOH . E 3 HOH A 53 653 472 HOH HOH . E 3 HOH A 54 654 473 HOH HOH . E 3 HOH A 55 655 474 HOH HOH . E 3 HOH A 56 656 475 HOH HOH . E 3 HOH A 57 657 476 HOH HOH . E 3 HOH A 58 658 477 HOH HOH . E 3 HOH A 59 659 478 HOH HOH . E 3 HOH A 60 660 479 HOH HOH . E 3 HOH A 61 661 480 HOH HOH . E 3 HOH A 62 662 481 HOH HOH . E 3 HOH A 63 663 482 HOH HOH . E 3 HOH A 64 664 483 HOH HOH . E 3 HOH A 65 665 484 HOH HOH . E 3 HOH A 66 666 485 HOH HOH . E 3 HOH A 67 667 486 HOH HOH . E 3 HOH A 68 668 487 HOH HOH . E 3 HOH A 69 669 488 HOH HOH . E 3 HOH A 70 670 489 HOH HOH . E 3 HOH A 71 671 490 HOH HOH . E 3 HOH A 72 672 491 HOH HOH . E 3 HOH A 73 673 492 HOH HOH . E 3 HOH A 74 674 493 HOH HOH . E 3 HOH A 75 675 494 HOH HOH . E 3 HOH A 76 676 495 HOH HOH . E 3 HOH A 77 677 496 HOH HOH . E 3 HOH A 78 678 497 HOH HOH . E 3 HOH A 79 679 498 HOH HOH . E 3 HOH A 80 680 499 HOH HOH . E 3 HOH A 81 681 500 HOH HOH . E 3 HOH A 82 682 501 HOH HOH . E 3 HOH A 83 683 502 HOH HOH . E 3 HOH A 84 684 503 HOH HOH . E 3 HOH A 85 685 504 HOH HOH . E 3 HOH A 86 686 505 HOH HOH . E 3 HOH A 87 687 506 HOH HOH . E 3 HOH A 88 688 507 HOH HOH . E 3 HOH A 89 689 508 HOH HOH . E 3 HOH A 90 690 509 HOH HOH . E 3 HOH A 91 691 510 HOH HOH . E 3 HOH A 92 692 511 HOH HOH . E 3 HOH A 93 693 512 HOH HOH . E 3 HOH A 94 694 513 HOH HOH . E 3 HOH A 95 695 514 HOH HOH . E 3 HOH A 96 696 515 HOH HOH . E 3 HOH A 97 697 516 HOH HOH . E 3 HOH A 98 698 517 HOH HOH . E 3 HOH A 99 699 518 HOH HOH . E 3 HOH A 100 700 519 HOH HOH . E 3 HOH A 101 701 520 HOH HOH . E 3 HOH A 102 702 521 HOH HOH . E 3 HOH A 103 703 522 HOH HOH . E 3 HOH A 104 704 523 HOH HOH . E 3 HOH A 105 705 524 HOH HOH . E 3 HOH A 106 706 525 HOH HOH . E 3 HOH A 107 707 526 HOH HOH . E 3 HOH A 108 708 527 HOH HOH . E 3 HOH A 109 709 528 HOH HOH . E 3 HOH A 110 710 529 HOH HOH . E 3 HOH A 111 711 530 HOH HOH . E 3 HOH A 112 712 531 HOH HOH . E 3 HOH A 113 713 532 HOH HOH . E 3 HOH A 114 714 533 HOH HOH . E 3 HOH A 115 715 534 HOH HOH . E 3 HOH A 116 716 535 HOH HOH . E 3 HOH A 117 717 536 HOH HOH . E 3 HOH A 118 718 537 HOH HOH . E 3 HOH A 119 719 538 HOH HOH . E 3 HOH A 120 720 539 HOH HOH . E 3 HOH A 121 721 540 HOH HOH . E 3 HOH A 122 722 541 HOH HOH . E 3 HOH A 123 723 542 HOH HOH . E 3 HOH A 124 724 543 HOH HOH . E 3 HOH A 125 725 544 HOH HOH . E 3 HOH A 126 726 545 HOH HOH . E 3 HOH A 127 727 546 HOH HOH . E 3 HOH A 128 728 547 HOH HOH . E 3 HOH A 129 729 548 HOH HOH . E 3 HOH A 130 730 549 HOH HOH . E 3 HOH A 131 731 550 HOH HOH . E 3 HOH A 132 732 551 HOH HOH . E 3 HOH A 133 733 552 HOH HOH . E 3 HOH A 134 734 553 HOH HOH . E 3 HOH A 135 735 554 HOH HOH . E 3 HOH A 136 736 555 HOH HOH . E 3 HOH A 137 737 556 HOH HOH . E 3 HOH A 138 738 557 HOH HOH . E 3 HOH A 139 739 558 HOH HOH . E 3 HOH A 140 740 559 HOH HOH . E 3 HOH A 141 741 560 HOH HOH . E 3 HOH A 142 742 561 HOH HOH . E 3 HOH A 143 743 562 HOH HOH . E 3 HOH A 144 744 563 HOH HOH . E 3 HOH A 145 745 564 HOH HOH . E 3 HOH A 146 746 565 HOH HOH . E 3 HOH A 147 747 566 HOH HOH . E 3 HOH A 148 748 567 HOH HOH . E 3 HOH A 149 749 568 HOH HOH . E 3 HOH A 150 750 569 HOH HOH . E 3 HOH A 151 751 570 HOH HOH . E 3 HOH A 152 752 571 HOH HOH . E 3 HOH A 153 753 572 HOH HOH . E 3 HOH A 154 754 573 HOH HOH . E 3 HOH A 155 755 574 HOH HOH . F 3 HOH B 1 601 420 HOH HOH . F 3 HOH B 2 602 421 HOH HOH . F 3 HOH B 3 603 422 HOH HOH . F 3 HOH B 4 604 423 HOH HOH . F 3 HOH B 5 605 424 HOH HOH . F 3 HOH B 6 606 425 HOH HOH . F 3 HOH B 7 607 426 HOH HOH . F 3 HOH B 8 608 427 HOH HOH . F 3 HOH B 9 609 428 HOH HOH . F 3 HOH B 10 610 429 HOH HOH . F 3 HOH B 11 611 430 HOH HOH . F 3 HOH B 12 612 431 HOH HOH . F 3 HOH B 13 613 432 HOH HOH . F 3 HOH B 14 614 433 HOH HOH . F 3 HOH B 15 615 434 HOH HOH . F 3 HOH B 16 616 435 HOH HOH . F 3 HOH B 17 617 436 HOH HOH . F 3 HOH B 18 618 437 HOH HOH . F 3 HOH B 19 619 438 HOH HOH . F 3 HOH B 20 620 439 HOH HOH . F 3 HOH B 21 621 440 HOH HOH . F 3 HOH B 22 622 441 HOH HOH . F 3 HOH B 23 623 442 HOH HOH . F 3 HOH B 24 624 443 HOH HOH . F 3 HOH B 25 625 444 HOH HOH . F 3 HOH B 26 626 445 HOH HOH . F 3 HOH B 27 627 446 HOH HOH . F 3 HOH B 28 628 447 HOH HOH . F 3 HOH B 29 629 448 HOH HOH . F 3 HOH B 30 630 449 HOH HOH . F 3 HOH B 31 631 450 HOH HOH . F 3 HOH B 32 632 451 HOH HOH . F 3 HOH B 33 633 452 HOH HOH . F 3 HOH B 34 634 453 HOH HOH . F 3 HOH B 35 635 454 HOH HOH . F 3 HOH B 36 636 455 HOH HOH . F 3 HOH B 37 637 456 HOH HOH . F 3 HOH B 38 638 457 HOH HOH . F 3 HOH B 39 639 458 HOH HOH . F 3 HOH B 40 640 459 HOH HOH . F 3 HOH B 41 641 460 HOH HOH . F 3 HOH B 42 642 461 HOH HOH . F 3 HOH B 43 643 462 HOH HOH . F 3 HOH B 44 644 463 HOH HOH . F 3 HOH B 45 645 464 HOH HOH . F 3 HOH B 46 646 465 HOH HOH . F 3 HOH B 47 647 466 HOH HOH . F 3 HOH B 48 648 467 HOH HOH . F 3 HOH B 49 649 468 HOH HOH . F 3 HOH B 50 650 469 HOH HOH . F 3 HOH B 51 651 470 HOH HOH . F 3 HOH B 52 652 471 HOH HOH . F 3 HOH B 53 653 472 HOH HOH . F 3 HOH B 54 654 473 HOH HOH . F 3 HOH B 55 655 474 HOH HOH . F 3 HOH B 56 656 475 HOH HOH . F 3 HOH B 57 657 476 HOH HOH . F 3 HOH B 58 658 477 HOH HOH . F 3 HOH B 59 659 478 HOH HOH . F 3 HOH B 60 660 479 HOH HOH . F 3 HOH B 61 661 480 HOH HOH . F 3 HOH B 62 662 481 HOH HOH . F 3 HOH B 63 663 482 HOH HOH . F 3 HOH B 64 664 483 HOH HOH . F 3 HOH B 65 665 484 HOH HOH . F 3 HOH B 66 666 485 HOH HOH . F 3 HOH B 67 667 486 HOH HOH . F 3 HOH B 68 668 487 HOH HOH . F 3 HOH B 69 669 488 HOH HOH . F 3 HOH B 70 670 489 HOH HOH . F 3 HOH B 71 671 490 HOH HOH . F 3 HOH B 72 672 491 HOH HOH . F 3 HOH B 73 673 492 HOH HOH . F 3 HOH B 74 674 493 HOH HOH . F 3 HOH B 75 675 494 HOH HOH . F 3 HOH B 76 676 495 HOH HOH . F 3 HOH B 77 677 496 HOH HOH . F 3 HOH B 78 678 497 HOH HOH . F 3 HOH B 79 679 498 HOH HOH . F 3 HOH B 80 680 499 HOH HOH . F 3 HOH B 81 681 500 HOH HOH . F 3 HOH B 82 682 501 HOH HOH . F 3 HOH B 83 683 502 HOH HOH . F 3 HOH B 84 684 503 HOH HOH . F 3 HOH B 85 685 504 HOH HOH . F 3 HOH B 86 686 505 HOH HOH . F 3 HOH B 87 687 506 HOH HOH . F 3 HOH B 88 688 507 HOH HOH . F 3 HOH B 89 689 508 HOH HOH . F 3 HOH B 90 690 509 HOH HOH . F 3 HOH B 91 691 510 HOH HOH . F 3 HOH B 92 692 511 HOH HOH . F 3 HOH B 93 693 512 HOH HOH . F 3 HOH B 94 694 513 HOH HOH . F 3 HOH B 95 695 514 HOH HOH . F 3 HOH B 96 696 515 HOH HOH . F 3 HOH B 97 697 516 HOH HOH . F 3 HOH B 98 698 517 HOH HOH . F 3 HOH B 99 699 518 HOH HOH . F 3 HOH B 100 700 519 HOH HOH . F 3 HOH B 101 701 520 HOH HOH . F 3 HOH B 102 702 521 HOH HOH . F 3 HOH B 103 703 522 HOH HOH . F 3 HOH B 104 704 523 HOH HOH . F 3 HOH B 105 705 524 HOH HOH . F 3 HOH B 106 706 525 HOH HOH . F 3 HOH B 107 707 526 HOH HOH . F 3 HOH B 108 708 527 HOH HOH . F 3 HOH B 109 709 528 HOH HOH . F 3 HOH B 110 710 529 HOH HOH . F 3 HOH B 111 711 530 HOH HOH . F 3 HOH B 112 712 531 HOH HOH . F 3 HOH B 113 713 532 HOH HOH . F 3 HOH B 114 714 533 HOH HOH . F 3 HOH B 115 715 534 HOH HOH . F 3 HOH B 116 716 535 HOH HOH . F 3 HOH B 117 717 536 HOH HOH . F 3 HOH B 118 718 537 HOH HOH . F 3 HOH B 119 719 538 HOH HOH . F 3 HOH B 120 720 539 HOH HOH . F 3 HOH B 121 721 540 HOH HOH . F 3 HOH B 122 722 541 HOH HOH . F 3 HOH B 123 723 542 HOH HOH . F 3 HOH B 124 724 543 HOH HOH . F 3 HOH B 125 725 544 HOH HOH . F 3 HOH B 126 726 545 HOH HOH . F 3 HOH B 127 727 546 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -9.457 _atom_site.Cartn_y 0.28 _atom_site.Cartn_z 13.74 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.87 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #