data_3WR9 # _model_server_result.job_id 8h7otAhKwCTm071aak22bg _model_server_result.datetime_utc '2024-11-27 22:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 3WR9 # _exptl.entry_id 3WR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,4,5-trihydroxybenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WR9 _cell.length_a 123.523 _cell.length_b 159.182 _cell.length_c 104.498 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 12 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A NE2 HIS 12 A HIS 12 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.542 ? metalc ? metalc3 A NE2 HIS 20 A HIS 20 1_555 D FE FE2 . A FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 A OD1 ASN 57 A ASN 57 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 A NE2 HIS 59 A HIS 59 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.935 ? metalc ? metalc6 A NE2 HIS 59 A HIS 59 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.27 ? metalc ? metalc7 A NE2 HIS 136 A HIS 136 1_555 D FE FE2 . A FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 A OE1 GLU 239 A GLU 239 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.132 ? metalc ? metalc9 C FE FE2 . A FE2 501 1_555 E OAE GDE . A GDE 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc10 C FE FE2 . A FE2 501 1_555 E OAC GDE . A GDE 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc11 C FE FE2 . A FE2 501 1_555 I O HOH . A HOH 691 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc12 B NE2 HIS 12 B HIS 12 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.009 ? metalc ? metalc13 B NE2 HIS 12 B HIS 12 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.226 ? metalc ? metalc14 B NE2 HIS 20 B HIS 20 1_555 G FE FE2 . B FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc15 B OD1 ASN 57 B ASN 57 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.45 ? metalc ? metalc16 B NE2 HIS 59 B HIS 59 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.154 ? metalc ? metalc17 B NE2 HIS 59 B HIS 59 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.447 ? metalc ? metalc18 B NE2 HIS 136 B HIS 136 1_555 G FE FE2 . B FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc19 B OE1 GLU 239 B GLU 239 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.082 ? metalc ? metalc20 F FE FE2 . B FE2 501 1_555 H OAE GDE . B GDE 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc21 F FE FE2 . B FE2 501 1_555 H OAD GDE . B GDE 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc22 F FE FE2 . B FE2 501 1_555 J O HOH . B HOH 616 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc23 G FE FE2 . B FE2 502 1_555 J O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C7 H6 O5' _chem_comp.formula_weight 170.12 _chem_comp.id GDE _chem_comp.mon_nstd_flag . _chem_comp.name '3,4,5-trihydroxybenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Gallate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAH GDE sing 83 n n OAB CAH GDE doub 84 n n OAC CAI GDE sing 85 n n OAD CAJ GDE sing 86 n n OAE CAL GDE sing 87 n n CAF CAI GDE doub 88 n y CAF CAK GDE sing 89 n y CAG CAJ GDE sing 90 n y CAG CAK GDE doub 91 n y CAH CAK GDE sing 92 n n CAI CAL GDE sing 93 n y CAJ CAL GDE doub 94 n y OAA HOAA GDE sing 95 n n OAC HOAC GDE sing 96 n n OAD HOAD GDE sing 97 n n OAE HOAE GDE sing 98 n n CAF HAF GDE sing 99 n n CAG HAG GDE sing 100 n n # _atom_sites.entry_id 3WR9 _atom_sites.fract_transf_matrix[1][1] 0.008096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 501 419 FE2 FE2 . D 2 FE2 A 1 502 420 FE2 FE2 . E 3 GDE A 1 503 421 GDE GDE . F 2 FE2 B 1 501 419 FE2 FE2 . G 2 FE2 B 1 502 420 FE2 FE2 . H 3 GDE B 1 503 421 GDE GDE . I 4 HOH A 1 601 422 HOH HOH . I 4 HOH A 2 602 423 HOH HOH . I 4 HOH A 3 603 424 HOH HOH . I 4 HOH A 4 604 425 HOH HOH . I 4 HOH A 5 605 426 HOH HOH . I 4 HOH A 6 606 427 HOH HOH . I 4 HOH A 7 607 428 HOH HOH . I 4 HOH A 8 608 429 HOH HOH . I 4 HOH A 9 609 430 HOH HOH . I 4 HOH A 10 610 431 HOH HOH . I 4 HOH A 11 611 432 HOH HOH . I 4 HOH A 12 612 433 HOH HOH . I 4 HOH A 13 613 434 HOH HOH . I 4 HOH A 14 614 435 HOH HOH . I 4 HOH A 15 615 436 HOH HOH . I 4 HOH A 16 616 437 HOH HOH . I 4 HOH A 17 617 438 HOH HOH . I 4 HOH A 18 618 439 HOH HOH . I 4 HOH A 19 619 440 HOH HOH . I 4 HOH A 20 620 441 HOH HOH . I 4 HOH A 21 621 442 HOH HOH . I 4 HOH A 22 622 443 HOH HOH . I 4 HOH A 23 623 444 HOH HOH . I 4 HOH A 24 624 445 HOH HOH . I 4 HOH A 25 625 446 HOH HOH . I 4 HOH A 26 626 447 HOH HOH . I 4 HOH A 27 627 448 HOH HOH . I 4 HOH A 28 628 449 HOH HOH . I 4 HOH A 29 629 450 HOH HOH . I 4 HOH A 30 630 451 HOH HOH . I 4 HOH A 31 631 452 HOH HOH . I 4 HOH A 32 632 453 HOH HOH . I 4 HOH A 33 633 454 HOH HOH . I 4 HOH A 34 634 455 HOH HOH . I 4 HOH A 35 635 456 HOH HOH . I 4 HOH A 36 636 457 HOH HOH . I 4 HOH A 37 637 458 HOH HOH . I 4 HOH A 38 638 459 HOH HOH . I 4 HOH A 39 639 460 HOH HOH . I 4 HOH A 40 640 461 HOH HOH . I 4 HOH A 41 641 462 HOH HOH . I 4 HOH A 42 642 463 HOH HOH . I 4 HOH A 43 643 464 HOH HOH . I 4 HOH A 44 644 465 HOH HOH . I 4 HOH A 45 645 466 HOH HOH . I 4 HOH A 46 646 467 HOH HOH . I 4 HOH A 47 647 468 HOH HOH . I 4 HOH A 48 648 469 HOH HOH . I 4 HOH A 49 649 470 HOH HOH . I 4 HOH A 50 650 471 HOH HOH . I 4 HOH A 51 651 472 HOH HOH . I 4 HOH A 52 652 473 HOH HOH . I 4 HOH A 53 653 474 HOH HOH . I 4 HOH A 54 654 475 HOH HOH . I 4 HOH A 55 655 476 HOH HOH . I 4 HOH A 56 656 477 HOH HOH . I 4 HOH A 57 657 478 HOH HOH . I 4 HOH A 58 658 479 HOH HOH . I 4 HOH A 59 659 480 HOH HOH . I 4 HOH A 60 660 481 HOH HOH . I 4 HOH A 61 661 482 HOH HOH . I 4 HOH A 62 662 483 HOH HOH . I 4 HOH A 63 663 484 HOH HOH . I 4 HOH A 64 664 485 HOH HOH . I 4 HOH A 65 665 486 HOH HOH . I 4 HOH A 66 666 487 HOH HOH . I 4 HOH A 67 667 488 HOH HOH . I 4 HOH A 68 668 489 HOH HOH . I 4 HOH A 69 669 490 HOH HOH . I 4 HOH A 70 670 491 HOH HOH . I 4 HOH A 71 671 492 HOH HOH . I 4 HOH A 72 672 493 HOH HOH . I 4 HOH A 73 673 494 HOH HOH . I 4 HOH A 74 674 495 HOH HOH . I 4 HOH A 75 675 496 HOH HOH . I 4 HOH A 76 676 497 HOH HOH . I 4 HOH A 77 677 498 HOH HOH . I 4 HOH A 78 678 499 HOH HOH . I 4 HOH A 79 679 500 HOH HOH . I 4 HOH A 80 680 501 HOH HOH . I 4 HOH A 81 681 502 HOH HOH . I 4 HOH A 82 682 503 HOH HOH . I 4 HOH A 83 683 504 HOH HOH . I 4 HOH A 84 684 505 HOH HOH . I 4 HOH A 85 685 506 HOH HOH . I 4 HOH A 86 686 507 HOH HOH . I 4 HOH A 87 687 508 HOH HOH . I 4 HOH A 88 688 509 HOH HOH . I 4 HOH A 89 689 510 HOH HOH . I 4 HOH A 90 690 511 HOH HOH . I 4 HOH A 91 691 512 HOH HOH . J 4 HOH B 1 601 422 HOH HOH . J 4 HOH B 2 602 423 HOH HOH . J 4 HOH B 3 603 424 HOH HOH . J 4 HOH B 4 604 425 HOH HOH . J 4 HOH B 5 605 426 HOH HOH . J 4 HOH B 6 606 427 HOH HOH . J 4 HOH B 7 607 428 HOH HOH . J 4 HOH B 8 608 429 HOH HOH . J 4 HOH B 9 609 430 HOH HOH . J 4 HOH B 10 610 431 HOH HOH . J 4 HOH B 11 611 432 HOH HOH . J 4 HOH B 12 612 433 HOH HOH . J 4 HOH B 13 613 434 HOH HOH . J 4 HOH B 14 614 435 HOH HOH . J 4 HOH B 15 615 436 HOH HOH . J 4 HOH B 16 616 437 HOH HOH . J 4 HOH B 17 617 438 HOH HOH . J 4 HOH B 18 618 439 HOH HOH . J 4 HOH B 19 619 440 HOH HOH . J 4 HOH B 20 620 441 HOH HOH . J 4 HOH B 21 621 442 HOH HOH . J 4 HOH B 22 622 443 HOH HOH . J 4 HOH B 23 623 444 HOH HOH . J 4 HOH B 24 624 445 HOH HOH . J 4 HOH B 25 625 446 HOH HOH . J 4 HOH B 26 626 447 HOH HOH . J 4 HOH B 27 627 448 HOH HOH . J 4 HOH B 28 628 449 HOH HOH . J 4 HOH B 29 629 450 HOH HOH . J 4 HOH B 30 630 451 HOH HOH . J 4 HOH B 31 631 452 HOH HOH . J 4 HOH B 32 632 453 HOH HOH . J 4 HOH B 33 633 454 HOH HOH . J 4 HOH B 34 634 455 HOH HOH . J 4 HOH B 35 635 456 HOH HOH . J 4 HOH B 36 636 457 HOH HOH . J 4 HOH B 37 637 458 HOH HOH . J 4 HOH B 38 638 459 HOH HOH . J 4 HOH B 39 639 460 HOH HOH . J 4 HOH B 40 640 461 HOH HOH . J 4 HOH B 41 641 462 HOH HOH . J 4 HOH B 42 642 463 HOH HOH . J 4 HOH B 43 643 464 HOH HOH . J 4 HOH B 44 644 465 HOH HOH . J 4 HOH B 45 645 466 HOH HOH . J 4 HOH B 46 646 467 HOH HOH . J 4 HOH B 47 647 468 HOH HOH . J 4 HOH B 48 648 469 HOH HOH . J 4 HOH B 49 649 470 HOH HOH . J 4 HOH B 50 650 471 HOH HOH . J 4 HOH B 51 651 472 HOH HOH . J 4 HOH B 52 652 473 HOH HOH . J 4 HOH B 53 653 474 HOH HOH . J 4 HOH B 54 654 475 HOH HOH . J 4 HOH B 55 655 476 HOH HOH . J 4 HOH B 56 656 477 HOH HOH . J 4 HOH B 57 657 478 HOH HOH . J 4 HOH B 58 658 479 HOH HOH . J 4 HOH B 59 659 480 HOH HOH . J 4 HOH B 60 660 481 HOH HOH . J 4 HOH B 61 661 482 HOH HOH . J 4 HOH B 62 662 483 HOH HOH . J 4 HOH B 63 663 484 HOH HOH . J 4 HOH B 64 664 485 HOH HOH . J 4 HOH B 65 665 486 HOH HOH . J 4 HOH B 66 666 487 HOH HOH . J 4 HOH B 67 667 488 HOH HOH . J 4 HOH B 68 668 489 HOH HOH . J 4 HOH B 69 669 490 HOH HOH . J 4 HOH B 70 670 491 HOH HOH . J 4 HOH B 71 671 492 HOH HOH . J 4 HOH B 72 672 493 HOH HOH . J 4 HOH B 73 673 494 HOH HOH . J 4 HOH B 74 674 495 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA GDE . . . E 3 50.17 -47.151 -2.792 1 24.27 ? OAA GDE 503 A 1 HETATM 2 O OAB GDE . . . E 3 49.316 -48.939 -3.783 1 27.59 ? OAB GDE 503 A 1 HETATM 3 O OAC GDE . . . E 3 45.698 -46.93 -6.807 1 22.16 ? OAC GDE 503 A 1 HETATM 4 O OAD GDE . . . E 3 48.419 -43.286 -5.373 1 21.51 ? OAD GDE 503 A 1 HETATM 5 O OAE GDE . . . E 3 46.253 -44.244 -6.954 1 21.93 ? OAE GDE 503 A 1 HETATM 6 C CAF GDE . . . E 3 47.472 -47.265 -5.25 1 22.42 ? CAF GDE 503 A 1 HETATM 7 C CAG GDE . . . E 3 48.807 -45.42 -4.54 1 22.51 ? CAG GDE 503 A 1 HETATM 8 C CAH GDE . . . E 3 49.37 -47.678 -3.614 1 25.86 ? CAH GDE 503 A 1 HETATM 9 C CAI GDE . . . E 3 46.725 -46.424 -6.071 1 21.49 ? CAI GDE 503 A 1 HETATM 10 C CAJ GDE . . . E 3 48.071 -44.585 -5.363 1 21.01 ? CAJ GDE 503 A 1 HETATM 11 C CAK GDE . . . E 3 48.519 -46.773 -4.478 1 23.19 ? CAK GDE 503 A 1 HETATM 12 C CAL GDE . . . E 3 47.012 -45.065 -6.134 1 22.72 ? CAL GDE 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #