data_3WRC # _model_server_result.job_id bv4romU12sOTWrKoO7Q0vg _model_server_result.datetime_utc '2024-10-12 07:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wrc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 3WRC # _exptl.entry_id 3WRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,4-DIHYDROXYBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.84 _cell.angle_gamma 90 _cell.entry_id 3WRC _cell.length_a 57.83 _cell.length_b 61.014 _cell.length_c 117.545 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 12 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc2 A OD1 ASN 57 A ASN 57 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A NE2 HIS 59 A HIS 59 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc4 A OE1 GLU 239 A GLU 239 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 B NE2 HIS 12 B HIS 12 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 B OD1 ASN 57 B ASN 57 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 B NE2 HIS 59 B HIS 59 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc8 B OE1 GLU 239 B GLU 239 1_555 D FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc9 D FE FE2 . B FE2 501 1_555 G O HOH . B HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc10 D FE FE2 . B FE2 501 1_555 G O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'C7 H6 O4' _chem_comp.formula_weight 154.12 _chem_comp.id DHB _chem_comp.mon_nstd_flag . _chem_comp.name '3,4-DIHYDROXYBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DHB doub 83 n y C1 C6 DHB sing 84 n y C1 C DHB sing 85 n n C2 C3 DHB sing 86 n y C2 H2 DHB sing 87 n n C3 O3 DHB sing 88 n n C3 C4 DHB doub 89 n y O3 HO3 DHB sing 90 n n C4 O4 DHB sing 91 n n C4 C5 DHB sing 92 n y O4 HO4 DHB sing 93 n n C5 C6 DHB doub 94 n y C5 H5 DHB sing 95 n n C6 H6 DHB sing 96 n n C O1 DHB doub 97 n n C O2 DHB sing 98 n n O2 HO2 DHB sing 99 n n # _atom_sites.entry_id 3WRC _atom_sites.fract_transf_matrix[1][1] 0.017292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 501 419 FE2 FE2 . D 2 FE2 B 1 501 419 FE2 FE2 . E 3 DHB B 1 502 420 DHB DHB . F 4 HOH A 1 601 420 HOH HOH . F 4 HOH A 2 602 421 HOH HOH . F 4 HOH A 3 603 422 HOH HOH . F 4 HOH A 4 604 423 HOH HOH . F 4 HOH A 5 605 424 HOH HOH . F 4 HOH A 6 606 425 HOH HOH . F 4 HOH A 7 607 426 HOH HOH . F 4 HOH A 8 608 427 HOH HOH . F 4 HOH A 9 609 428 HOH HOH . F 4 HOH A 10 610 429 HOH HOH . G 4 HOH B 1 601 421 HOH HOH . G 4 HOH B 2 602 422 HOH HOH . G 4 HOH B 3 603 423 HOH HOH . G 4 HOH B 4 604 424 HOH HOH . G 4 HOH B 5 605 425 HOH HOH . G 4 HOH B 6 606 426 HOH HOH . G 4 HOH B 7 607 427 HOH HOH . G 4 HOH B 8 608 428 HOH HOH . G 4 HOH B 9 609 429 HOH HOH . G 4 HOH B 10 610 430 HOH HOH . G 4 HOH B 11 611 431 HOH HOH . G 4 HOH B 12 612 432 HOH HOH . G 4 HOH B 13 613 433 HOH HOH . G 4 HOH B 14 614 434 HOH HOH . G 4 HOH B 15 615 435 HOH HOH . G 4 HOH B 16 616 436 HOH HOH . G 4 HOH B 17 617 437 HOH HOH . G 4 HOH B 18 618 438 HOH HOH . G 4 HOH B 19 619 439 HOH HOH . G 4 HOH B 20 620 440 HOH HOH . G 4 HOH B 21 621 441 HOH HOH . G 4 HOH B 22 622 442 HOH HOH . G 4 HOH B 23 623 443 HOH HOH . G 4 HOH B 24 624 444 HOH HOH . G 4 HOH B 25 625 445 HOH HOH . G 4 HOH B 26 626 446 HOH HOH . G 4 HOH B 27 627 447 HOH HOH . G 4 HOH B 28 628 448 HOH HOH . G 4 HOH B 29 629 449 HOH HOH . G 4 HOH B 30 630 450 HOH HOH . G 4 HOH B 31 631 451 HOH HOH . G 4 HOH B 32 632 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DHB . . . E 3 -4.48 3.029 8.346 1 27.77 ? C1 DHB 502 B 1 HETATM 2 C C2 DHB . . . E 3 -4.845 4.077 9.174 1 27.25 ? C2 DHB 502 B 1 HETATM 3 C C3 DHB . . . E 3 -5.746 3.847 10.201 1 27.47 ? C3 DHB 502 B 1 HETATM 4 O O3 DHB . . . E 3 -6.117 4.867 11.019 1 27.41 ? O3 DHB 502 B 1 HETATM 5 C C4 DHB . . . E 3 -6.274 2.581 10.394 1 29.4 ? C4 DHB 502 B 1 HETATM 6 O O4 DHB . . . E 3 -7.195 2.341 11.369 1 32.59 ? O4 DHB 502 B 1 HETATM 7 C C5 DHB . . . E 3 -5.917 1.545 9.547 1 30.08 ? C5 DHB 502 B 1 HETATM 8 C C6 DHB . . . E 3 -5.02 1.773 8.526 1 26.69 ? C6 DHB 502 B 1 HETATM 9 C C DHB . . . E 3 -3.487 3.247 7.208 1 27.51 ? C DHB 502 B 1 HETATM 10 O O1 DHB . . . E 3 -2.856 4.331 7.195 1 27.93 ? O1 DHB 502 B 1 HETATM 11 O O2 DHB . . . E 3 -3.571 2.453 6.241 1 27.6 ? O2 DHB 502 B 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #