data_3WRI # _model_server_result.job_id a2_AWH2S3O60J3xttm7m0Q _model_server_result.datetime_utc '2024-11-15 22:52:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3WRI # _exptl.entry_id 3WRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.98 _cell.angle_gamma 90 _cell.entry_id 3WRI _cell.length_a 61.44 _cell.length_b 74.227 _cell.length_c 92.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 358 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 357 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.173 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 157 n n CHA C4D HEM doub 158 n n CHA HHA HEM sing 159 n n CHB C4A HEM sing 160 n n CHB C1B HEM doub 161 n n CHB HHB HEM sing 162 n n CHC C4B HEM sing 163 n n CHC C1C HEM doub 164 n n CHC HHC HEM sing 165 n n CHD C4C HEM doub 166 n n CHD C1D HEM sing 167 n n CHD HHD HEM sing 168 n n C1A C2A HEM doub 169 n y C1A NA HEM sing 170 n y C2A C3A HEM sing 171 n y C2A CAA HEM sing 172 n n C3A C4A HEM doub 173 n y C3A CMA HEM sing 174 n n C4A NA HEM sing 175 n y CMA HMA HEM sing 176 n n CMA HMAA HEM sing 177 n n CMA HMAB HEM sing 178 n n CAA CBA HEM sing 179 n n CAA HAA HEM sing 180 n n CAA HAAA HEM sing 181 n n CBA CGA HEM sing 182 n n CBA HBA HEM sing 183 n n CBA HBAA HEM sing 184 n n CGA O1A HEM doub 185 n n CGA O2A HEM sing 186 n n C1B C2B HEM sing 187 n n C1B NB HEM sing 188 n n C2B C3B HEM doub 189 n n C2B CMB HEM sing 190 n n C3B C4B HEM sing 191 n n C3B CAB HEM sing 192 n n C4B NB HEM doub 193 n n CMB HMB HEM sing 194 n n CMB HMBA HEM sing 195 n n CMB HMBB HEM sing 196 n n CAB CBB HEM doub 197 n n CAB HAB HEM sing 198 n n CBB HBB HEM sing 199 n n CBB HBBA HEM sing 200 n n C1C C2C HEM sing 201 n y C1C NC HEM sing 202 n y C2C C3C HEM doub 203 n y C2C CMC HEM sing 204 n n C3C C4C HEM sing 205 n y C3C CAC HEM sing 206 n n C4C NC HEM sing 207 n y CMC HMC HEM sing 208 n n CMC HMCA HEM sing 209 n n CMC HMCB HEM sing 210 n n CAC CBC HEM doub 211 n n CAC HAC HEM sing 212 n n CBC HBC HEM sing 213 n n CBC HBCA HEM sing 214 n n C1D C2D HEM sing 215 n n C1D ND HEM doub 216 n n C2D C3D HEM doub 217 n n C2D CMD HEM sing 218 n n C3D C4D HEM sing 219 n n C3D CAD HEM sing 220 n n C4D ND HEM sing 221 n n CMD HMD HEM sing 222 n n CMD HMDA HEM sing 223 n n CMD HMDB HEM sing 224 n n CAD CBD HEM sing 225 n n CAD HAD HEM sing 226 n n CAD HADA HEM sing 227 n n CBD CGD HEM sing 228 n n CBD HBD HEM sing 229 n n CBD HBDA HEM sing 230 n n CGD O1D HEM doub 231 n n CGD O2D HEM sing 232 n n O2A H2A HEM sing 233 n n O2D H2D HEM sing 234 n n FE NA HEM sing 235 n n FE NB HEM sing 236 n n FE NC HEM sing 237 n n FE ND HEM sing 238 n n # _atom_sites.entry_id 3WRI _atom_sites.fract_transf_matrix[1][1] 0.016276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CAM A 1 502 502 CAM CAM . E 2 HEM B 1 501 501 HEM HEM . F 3 CAM B 1 502 502 CAM CAM . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . H 4 HOH B 1 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 1.978 -4.347 -0.338 1 10.65 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 6.49 -6.076 -1.425 1 16.81 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 7.253 -7.212 3.118 1 13.52 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 2.422 -6.136 4.08 1 17.8 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 3.208 -4.738 -0.955 1 14.75 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 3.386 -4.31 -2.343 1 13.17 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 4.728 -4.79 -2.646 1 15.13 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 5.196 -5.457 -1.417 1 10.07 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 5.471 -4.677 -3.95 1 21.07 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 2.426 -3.538 -3.193 1 14.47 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 1.786 -4.401 -4.262 1 17.07 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 0.779 -3.526 -4.975 1 26.52 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 -0.396 -3.942 -5.115 1 24.42 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 1.173 -2.403 -5.371 1 28.19 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 7.139 -6.598 -0.271 1 18.25 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 8.564 -6.963 -0.336 1 10.39 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 8.771 -7.358 1.055 1 15.93 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 7.448 -7.138 1.697 1 15.07 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 9.462 -6.975 -1.527 1 9.63 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 10.031 -7.796 1.725 1 22.9 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 11.112 -8.161 1.055 1 16.33 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 5.955 -7.053 3.749 1 21.95 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 5.819 -7.392 5.192 1 19.55 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 4.394 -7.106 5.447 1 15.6 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 3.818 -6.564 4.194 1 15.14 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 6.889 -8.003 6.067 1 16.78 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 3.667 -7.37 6.707 1 21.6 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 4.197 -6.946 7.841 1 16.87 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 1.859 -5.528 2.877 1 13.53 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 0.533 -4.857 2.916 1 13.64 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 0.446 -4.262 1.59 1 18.79 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 1.683 -4.789 0.983 1 13.56 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 -0.477 -4.757 4.022 1 15.83 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 -0.709 -3.529 0.911 1 20.06 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 -0.724 -2.002 1.067 1 31.54 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 -1.973 -1.422 0.394 1 25.49 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 -2.32 -0.235 0.654 1 25.24 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 -2.626 -2.163 -0.382 1 23.13 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 4.413 -5.195 -0.244 1 14.4 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 6.504 -6.594 0.911 1 20.62 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 4.861 -6.25 3.212 1 17.23 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 2.603 -5.393 1.757 1 13.83 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 4.462 -6.37 1.336 1 15.04 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #