data_3WRI # _model_server_result.job_id oQouPrrd59a0rn9ZZKPK4Q _model_server_result.datetime_utc '2024-11-15 23:01:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3WRI # _exptl.entry_id 3WRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.98 _cell.angle_gamma 90 _cell.entry_id 3WRI _cell.length_a 61.44 _cell.length_b 74.227 _cell.length_c 92.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 358 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 357 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.173 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 157 n n CHA C4D HEM doub 158 n n CHA HHA HEM sing 159 n n CHB C4A HEM sing 160 n n CHB C1B HEM doub 161 n n CHB HHB HEM sing 162 n n CHC C4B HEM sing 163 n n CHC C1C HEM doub 164 n n CHC HHC HEM sing 165 n n CHD C4C HEM doub 166 n n CHD C1D HEM sing 167 n n CHD HHD HEM sing 168 n n C1A C2A HEM doub 169 n y C1A NA HEM sing 170 n y C2A C3A HEM sing 171 n y C2A CAA HEM sing 172 n n C3A C4A HEM doub 173 n y C3A CMA HEM sing 174 n n C4A NA HEM sing 175 n y CMA HMA HEM sing 176 n n CMA HMAA HEM sing 177 n n CMA HMAB HEM sing 178 n n CAA CBA HEM sing 179 n n CAA HAA HEM sing 180 n n CAA HAAA HEM sing 181 n n CBA CGA HEM sing 182 n n CBA HBA HEM sing 183 n n CBA HBAA HEM sing 184 n n CGA O1A HEM doub 185 n n CGA O2A HEM sing 186 n n C1B C2B HEM sing 187 n n C1B NB HEM sing 188 n n C2B C3B HEM doub 189 n n C2B CMB HEM sing 190 n n C3B C4B HEM sing 191 n n C3B CAB HEM sing 192 n n C4B NB HEM doub 193 n n CMB HMB HEM sing 194 n n CMB HMBA HEM sing 195 n n CMB HMBB HEM sing 196 n n CAB CBB HEM doub 197 n n CAB HAB HEM sing 198 n n CBB HBB HEM sing 199 n n CBB HBBA HEM sing 200 n n C1C C2C HEM sing 201 n y C1C NC HEM sing 202 n y C2C C3C HEM doub 203 n y C2C CMC HEM sing 204 n n C3C C4C HEM sing 205 n y C3C CAC HEM sing 206 n n C4C NC HEM sing 207 n y CMC HMC HEM sing 208 n n CMC HMCA HEM sing 209 n n CMC HMCB HEM sing 210 n n CAC CBC HEM doub 211 n n CAC HAC HEM sing 212 n n CBC HBC HEM sing 213 n n CBC HBCA HEM sing 214 n n C1D C2D HEM sing 215 n n C1D ND HEM doub 216 n n C2D C3D HEM doub 217 n n C2D CMD HEM sing 218 n n C3D C4D HEM sing 219 n n C3D CAD HEM sing 220 n n C4D ND HEM sing 221 n n CMD HMD HEM sing 222 n n CMD HMDA HEM sing 223 n n CMD HMDB HEM sing 224 n n CAD CBD HEM sing 225 n n CAD HAD HEM sing 226 n n CAD HADA HEM sing 227 n n CBD CGD HEM sing 228 n n CBD HBD HEM sing 229 n n CBD HBDA HEM sing 230 n n CGD O1D HEM doub 231 n n CGD O2D HEM sing 232 n n O2A H2A HEM sing 233 n n O2D H2D HEM sing 234 n n FE NA HEM sing 235 n n FE NB HEM sing 236 n n FE NC HEM sing 237 n n FE ND HEM sing 238 n n # _atom_sites.entry_id 3WRI _atom_sites.fract_transf_matrix[1][1] 0.016276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CAM A 1 502 502 CAM CAM . E 2 HEM B 1 501 501 HEM HEM . F 3 CAM B 1 502 502 CAM CAM . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . H 4 HOH B 1 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 28.78 4.424 45.971 1 11.57 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . E 2 24.233 6.035 44.872 1 14.19 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . E 2 23.547 7.539 49.348 1 14.73 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . E 2 28.299 6.311 50.367 1 21.02 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . E 2 27.519 4.743 45.378 1 11.89 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . E 2 27.302 4.269 44 1 12.57 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . E 2 25.951 4.73 43.708 1 16.09 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . E 2 25.513 5.401 44.941 1 10.25 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . E 2 25.127 4.474 42.464 1 17.22 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . E 2 28.155 3.392 43.128 1 15.6 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . E 2 28.818 4.277 42.078 1 18.38 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . E 2 29.722 3.435 41.196 1 26.7 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . E 2 30.919 3.779 41.074 1 25.35 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . E 2 29.25 2.409 40.646 1 27.65 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . E 2 23.562 6.537 46.031 1 16.58 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . E 2 22.199 7.129 45.919 1 13.61 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . E 2 22.033 7.59 47.301 1 18.08 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . E 2 23.297 7.2 47.966 1 16.69 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . E 2 21.275 7.194 44.731 1 7.19 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . E 2 20.86 8.25 47.944 1 18.93 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . E 2 19.652 8.137 47.424 1 16.68 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . E 2 24.789 7.178 50.004 1 23.02 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . E 2 24.844 7.308 51.484 1 21.5 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . E 2 26.264 7.016 51.744 1 16.3 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . E 2 26.888 6.673 50.457 1 15.98 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . E 2 23.697 7.648 52.409 1 13.59 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . E 2 26.942 6.901 53.05 1 25.24 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . E 2 26.317 7.139 54.187 1 17.06 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . E 2 28.844 5.546 49.236 1 15.7 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . E 2 30.255 5.076 49.216 1 16.42 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . E 2 30.382 4.457 47.905 1 20.19 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . E 2 29.032 4.725 47.348 1 17.15 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . E 2 31.32 5.149 50.273 1 18.22 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . E 2 31.602 3.788 47.276 1 23.32 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . E 2 31.555 2.235 47.296 1 25.44 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . E 2 32.801 1.579 46.636 1 27.45 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . E 2 33.179 0.395 46.917 1 22.84 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . E 2 33.449 2.256 45.81 1 21.75 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . E 2 26.545 5.715 45.913 1 16.22 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . E 2 24.267 6.703 47.167 1 18.54 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . E 2 26.082 7.077 49.299 1 24.3 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . E 2 28.155 5.446 48.076 1 16.81 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . E 2 26.086 5.862 47.815 1 15.68 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #