data_3WRI # _model_server_result.job_id D-AgsJg4UgRrOd6YrpFLEw _model_server_result.datetime_utc '2024-11-15 22:42:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3WRI # _exptl.entry_id 3WRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAMPHOR _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.98 _cell.angle_gamma 90 _cell.entry_id 3WRI _cell.length_a 61.44 _cell.length_b 74.227 _cell.length_c 92.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 358 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 357 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.173 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 O' _chem_comp.formula_weight 152.233 _chem_comp.id CAM _chem_comp.mon_nstd_flag . _chem_comp.name CAMPHOR _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CAM sing 70 n n C1 C6 CAM sing 71 n n C1 C7 CAM sing 72 n n C1 C10 CAM sing 73 n n C2 O CAM doub 74 n n C2 C3 CAM sing 75 n n C3 C4 CAM sing 76 n n C3 H31 CAM sing 77 n n C3 H32 CAM sing 78 n n C4 C5 CAM sing 79 n n C4 C7 CAM sing 80 n n C4 H4 CAM sing 81 n n C5 C6 CAM sing 82 n n C5 H51 CAM sing 83 n n C5 H52 CAM sing 84 n n C6 H61 CAM sing 85 n n C6 H62 CAM sing 86 n n C7 C8 CAM sing 87 n n C7 C9 CAM sing 88 n n C8 H81 CAM sing 89 n n C8 H82 CAM sing 90 n n C8 H83 CAM sing 91 n n C9 H91 CAM sing 92 n n C9 H92 CAM sing 93 n n C9 H93 CAM sing 94 n n C10 H101 CAM sing 95 n n C10 H102 CAM sing 96 n n C10 H103 CAM sing 97 n n # _atom_sites.entry_id 3WRI _atom_sites.fract_transf_matrix[1][1] 0.016276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CAM A 1 502 502 CAM CAM . E 2 HEM B 1 501 501 HEM HEM . F 3 CAM B 1 502 502 CAM CAM . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . H 4 HOH B 1 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CAM . . . D 3 0.434 -9.191 -1.077 0.72 25.06 ? C1 CAM 502 A 1 HETATM 2 C C2 CAM . . . D 3 -0.082 -8.138 -2.022 0.72 30.11 ? C2 CAM 502 A 1 HETATM 3 O O CAM . . . D 3 -1.239 -7.73 -2.133 0.72 23.53 ? O CAM 502 A 1 HETATM 4 C C3 CAM . . . D 3 1.102 -7.605 -2.808 0.72 24.41 ? C3 CAM 502 A 1 HETATM 5 C C4 CAM . . . D 3 2.229 -8.42 -2.17 0.72 18.38 ? C4 CAM 502 A 1 HETATM 6 C C5 CAM . . . D 3 2.418 -7.942 -0.728 0.72 19.36 ? C5 CAM 502 A 1 HETATM 7 C C6 CAM . . . D 3 1.185 -8.443 0.013 0.72 19.07 ? C6 CAM 502 A 1 HETATM 8 C C7 CAM . . . D 3 1.547 -9.731 -1.927 0.72 18.06 ? C7 CAM 502 A 1 HETATM 9 C C8 CAM . . . D 3 1.008 -10.296 -3.234 0.72 25.12 ? C8 CAM 502 A 1 HETATM 10 C C9 CAM . . . D 3 2.458 -10.675 -1.149 0.72 19.88 ? C9 CAM 502 A 1 HETATM 11 C C10 CAM . . . D 3 -0.547 -10.264 -0.599 0.72 22.31 ? C10 CAM 502 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #