data_3WS5 # _model_server_result.job_id 453M3gymji7G079xarddpA _model_server_result.datetime_utc '2024-12-18 08:59:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ws5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 3WS5 # _exptl.entry_id 3WS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WS5 _cell.length_a 114.262 _cell.length_b 114.262 _cell.length_c 66.998 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 219 A ASP 219 1_555 D SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc2 A OD2 ASP 220 A ASP 220 1_555 D SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc3 B OD1 ASP 291 B ASP 291 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 B OE1 GLU 295 B GLU 295 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc5 B OE2 GLU 295 B GLU 295 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WS5 _atom_sites.fract_transf_matrix[1][1] 0.008752 _atom_sites.fract_transf_matrix[1][2] 0.005053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SR A 1 401 1 SR SR . E 3 CL A 1 402 1 CL CL . F 4 CA B 1 401 1 CA CA . G 3 CL B 1 402 2 CL CL . H 3 CL C 1 401 3 CL CL . I 5 HOH A 1 501 2 HOH HOH . I 5 HOH A 2 502 3 HOH HOH . I 5 HOH A 3 503 4 HOH HOH . I 5 HOH A 4 504 5 HOH HOH . I 5 HOH A 5 505 10 HOH HOH . I 5 HOH A 6 506 12 HOH HOH . I 5 HOH A 7 507 15 HOH HOH . I 5 HOH A 8 508 19 HOH HOH . I 5 HOH A 9 509 20 HOH HOH . I 5 HOH A 10 510 21 HOH HOH . I 5 HOH A 11 511 28 HOH HOH . I 5 HOH A 12 512 29 HOH HOH . I 5 HOH A 13 513 30 HOH HOH . I 5 HOH A 14 514 33 HOH HOH . I 5 HOH A 15 515 38 HOH HOH . I 5 HOH A 16 516 39 HOH HOH . I 5 HOH A 17 517 40 HOH HOH . I 5 HOH A 18 518 41 HOH HOH . I 5 HOH A 19 519 42 HOH HOH . I 5 HOH A 20 520 43 HOH HOH . I 5 HOH A 21 521 44 HOH HOH . I 5 HOH A 22 522 45 HOH HOH . I 5 HOH A 23 523 46 HOH HOH . I 5 HOH A 24 524 47 HOH HOH . I 5 HOH A 25 525 48 HOH HOH . I 5 HOH A 26 526 49 HOH HOH . I 5 HOH A 27 527 57 HOH HOH . I 5 HOH A 28 528 58 HOH HOH . I 5 HOH A 29 529 59 HOH HOH . I 5 HOH A 30 530 60 HOH HOH . I 5 HOH A 31 531 62 HOH HOH . I 5 HOH A 32 532 66 HOH HOH . I 5 HOH A 33 533 67 HOH HOH . I 5 HOH A 34 534 68 HOH HOH . I 5 HOH A 35 535 76 HOH HOH . I 5 HOH A 36 536 79 HOH HOH . I 5 HOH A 37 537 81 HOH HOH . I 5 HOH A 38 538 85 HOH HOH . I 5 HOH A 39 539 86 HOH HOH . I 5 HOH A 40 540 87 HOH HOH . J 5 HOH B 1 501 6 HOH HOH . J 5 HOH B 2 502 8 HOH HOH . J 5 HOH B 3 503 22 HOH HOH . J 5 HOH B 4 504 23 HOH HOH . J 5 HOH B 5 505 25 HOH HOH . J 5 HOH B 6 506 26 HOH HOH . J 5 HOH B 7 507 31 HOH HOH . J 5 HOH B 8 508 50 HOH HOH . J 5 HOH B 9 509 51 HOH HOH . J 5 HOH B 10 510 52 HOH HOH . J 5 HOH B 11 511 56 HOH HOH . J 5 HOH B 12 512 64 HOH HOH . J 5 HOH B 13 513 70 HOH HOH . J 5 HOH B 14 514 71 HOH HOH . J 5 HOH B 15 515 73 HOH HOH . J 5 HOH B 16 516 74 HOH HOH . J 5 HOH B 17 517 75 HOH HOH . J 5 HOH B 18 518 83 HOH HOH . J 5 HOH B 19 519 84 HOH HOH . J 5 HOH B 20 520 89 HOH HOH . K 5 HOH C 1 501 1 HOH HOH . K 5 HOH C 2 502 7 HOH HOH . K 5 HOH C 3 503 9 HOH HOH . K 5 HOH C 4 504 11 HOH HOH . K 5 HOH C 5 505 13 HOH HOH . K 5 HOH C 6 506 14 HOH HOH . K 5 HOH C 7 507 16 HOH HOH . K 5 HOH C 8 508 17 HOH HOH . K 5 HOH C 9 509 18 HOH HOH . K 5 HOH C 10 510 24 HOH HOH . K 5 HOH C 11 511 27 HOH HOH . K 5 HOH C 12 512 32 HOH HOH . K 5 HOH C 13 513 34 HOH HOH . K 5 HOH C 14 514 35 HOH HOH . K 5 HOH C 15 515 36 HOH HOH . K 5 HOH C 16 516 37 HOH HOH . K 5 HOH C 17 517 53 HOH HOH . K 5 HOH C 18 518 54 HOH HOH . K 5 HOH C 19 519 55 HOH HOH . K 5 HOH C 20 520 61 HOH HOH . K 5 HOH C 21 521 63 HOH HOH . K 5 HOH C 22 522 65 HOH HOH . K 5 HOH C 23 523 69 HOH HOH . K 5 HOH C 24 524 72 HOH HOH . K 5 HOH C 25 525 77 HOH HOH . K 5 HOH C 26 526 78 HOH HOH . K 5 HOH C 27 527 80 HOH HOH . K 5 HOH C 28 528 82 HOH HOH . K 5 HOH C 29 529 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -56.885 _atom_site.Cartn_y -35.849 _atom_site.Cartn_z 36.494 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #