data_3WS9
#
_model_server_result.job_id            xwwE347R33E0roTbnW-u3Q 
_model_server_result.datetime_utc      '2024-10-11 02:25:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ws9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":803}' 
#
_entry.id    3WS9 
#
_exptl.entry_id    3WS9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              353.42 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-[2-(5-methyl-1-phenyl-1H-benzimidazol-2-yl)ethyl]imidazo[1,5-b]pyridazine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WS9 
_cell.length_a            50.421 
_cell.length_b            81.542 
_cell.length_c            161.255 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WS9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 A OD1 ASP 230 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc6 D MG MG . A MG 802 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc7 D MG MG . A MG 802 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc8 B NE2 HIS 85 B HIS 529 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc9 B NE2 HIS 119 B HIS 563 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc10 B OD2 ASP 120 B ASP 564 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
metalc ? metalc11 B OD1 ASP 120 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc12 B OD2 ASP 120 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc13 B OD1 ASP 230 B ASP 674 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc14 G MG MG . B MG 802 1_555 J O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc15 G MG MG . B MG 802 1_555 J O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc16 G MG MG . B MG 802 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
#
_chem_comp.formula           'C22 H19 N5' 
_chem_comp.formula_weight    353.42 
_chem_comp.id                X4D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-[2-(5-methyl-1-phenyl-1H-benzimidazol-2-yl)ethyl]imidazo[1,5-b]pyridazine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C15 X4D doub 376 n y 
C17 C16 X4D sing 377 n y 
C15 C10 X4D sing 378 n y 
C26 C25 X4D doub 379 n y 
C26 C27 X4D sing 380 n y 
C25 C24 X4D sing 381 n y 
C20 C16 X4D sing 382 n n 
C27 C18 X4D doub 383 n y 
C16 C12 X4D doub 384 n y 
C24 C23 X4D doub 385 n y 
C10 N5 X4D sing 386 n y 
C10 C8 X4D doub 387 n y 
C18 C23 X4D sing 388 n y 
C18 N5 X4D sing 389 n n 
N5 C1 X4D sing 390 n y 
C12 C8 X4D sing 391 n y 
C8 N4 X4D sing 392 n y 
C1 N4 X4D doub 393 n y 
C1 C11 X4D sing 394 n n 
C11 C13 X4D sing 395 n n 
C13 C2 X4D sing 396 n n 
N3 C2 X4D doub 397 n y 
N3 C9 X4D sing 398 n y 
C2 N6 X4D sing 399 n y 
C9 C7 X4D doub 400 n y 
N6 C7 X4D sing 401 n y 
N6 N14 X4D sing 402 n y 
C7 C19 X4D sing 403 n y 
N14 C21 X4D doub 404 n y 
C19 C22 X4D doub 405 n y 
C21 C22 X4D sing 406 n y 
C25 H1 X4D sing 407 n n 
C24 H2 X4D sing 408 n n 
C26 H3 X4D sing 409 n n 
C17 H4 X4D sing 410 n n 
C15 H5 X4D sing 411 n n 
C23 H6 X4D sing 412 n n 
C27 H7 X4D sing 413 n n 
C12 H8 X4D sing 414 n n 
C9 H9 X4D sing 415 n n 
C19 H10 X4D sing 416 n n 
C22 H11 X4D sing 417 n n 
C21 H12 X4D sing 418 n n 
C20 H13 X4D sing 419 n n 
C20 H14 X4D sing 420 n n 
C20 H15 X4D sing 421 n n 
C13 H16 X4D sing 422 n n 
C13 H17 X4D sing 423 n n 
C11 H18 X4D sing 424 n n 
C11 H19 X4D sing 425 n n 
#
_atom_sites.entry_id                     3WS9 
_atom_sites.fract_transf_matrix[1][1]    0.019833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 801 1 ZN ZN . 
D 3 MG A 1 802 2 MG MG . 
E 4 X4D A 1 803 1 X4D X4D . 
F 2 ZN B 1 801 1 ZN ZN . 
G 3 MG B 1 802 2 MG MG . 
H 4 X4D B 1 803 1 X4D X4D . 
I 5 HOH A 1 901 4 HOH HOH . 
I 5 HOH A 2 902 5 HOH HOH . 
J 5 HOH B 1 901 1 HOH HOH . 
J 5 HOH B 2 902 2 HOH HOH . 
J 5 HOH B 3 903 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C25 X4D . . . H 4 25.376 28.396 39.716 1 56.14 ? C25 X4D 803 B 1 
HETATM 2 C C24 X4D . . . H 4 25.95 27.143 39.575 1 53.27 ? C24 X4D 803 B 1 
HETATM 3 C C26 X4D . . . H 4 24.02 28.571 39.918 1 50.37 ? C26 X4D 803 B 1 
HETATM 4 C C17 X4D . . . H 4 22.757 23.032 36.95 1 42.15 ? C17 X4D 803 B 1 
HETATM 5 C C15 X4D . . . H 4 23.172 24.127 37.651 1 42.79 ? C15 X4D 803 B 1 
HETATM 6 C C23 X4D . . . H 4 25.15 26.019 39.633 1 49.93 ? C23 X4D 803 B 1 
HETATM 7 C C27 X4D . . . H 4 23.227 27.447 39.979 1 52.71 ? C27 X4D 803 B 1 
HETATM 8 C C12 X4D . . . H 4 21.511 22.126 38.826 1 45.75 ? C12 X4D 803 B 1 
HETATM 9 C C9 X4D . . . H 4 21.006 28.391 44.887 1 47.07 ? C9 X4D 803 B 1 
HETATM 10 C C16 X4D . . . H 4 21.954 22.07 37.517 1 47.23 ? C16 X4D 803 B 1 
HETATM 11 C C8 X4D . . . H 4 21.921 23.221 39.547 1 44.53 ? C8 X4D 803 B 1 
HETATM 12 C C10 X4D . . . H 4 22.721 24.166 38.947 1 44.19 ? C10 X4D 803 B 1 
HETATM 13 C C18 X4D . . . H 4 23.791 26.192 39.835 1 49.88 ? C18 X4D 803 B 1 
HETATM 14 C C7 X4D . . . H 4 21.376 27.662 46.003 1 49.13 ? C7 X4D 803 B 1 
HETATM 15 C C2 X4D . . . H 4 21.311 26.402 44.218 1 48.19 ? C2 X4D 803 B 1 
HETATM 16 C C1 X4D . . . H 4 22.285 24.677 41.062 1 47.54 ? C1 X4D 803 B 1 
HETATM 17 C C19 X4D . . . H 4 21.588 27.916 47.375 1 48.2 ? C19 X4D 803 B 1 
HETATM 18 C C22 X4D . . . H 4 21.962 26.942 48.218 1 45.53 ? C22 X4D 803 B 1 
HETATM 19 C C21 X4D . . . H 4 22.115 25.616 47.588 1 46.71 ? C21 X4D 803 B 1 
HETATM 20 C C20 X4D . . . H 4 21.534 20.909 36.672 1 51.64 ? C20 X4D 803 B 1 
HETATM 21 C C13 X4D . . . H 4 21.427 25.161 43.427 1 47.23 ? C13 X4D 803 B 1 
HETATM 22 C C11 X4D . . . H 4 22.371 25.49 42.298 1 46.94 ? C11 X4D 803 B 1 
HETATM 23 N N3 X4D . . . H 4 20.961 27.599 43.772 1 44.42 ? N3 X4D 803 B 1 
HETATM 24 N N4 X4D . . . H 4 21.658 23.54 40.852 1 47.29 ? N4 X4D 803 B 1 
HETATM 25 N N14 X4D . . . H 4 21.942 25.322 46.335 1 48.47 ? N14 X4D 803 B 1 
HETATM 26 N N5 X4D . . . H 4 22.938 25.081 39.927 1 46.37 ? N5 X4D 803 B 1 
HETATM 27 N N6 X4D . . . H 4 21.574 26.385 45.567 1 50.53 ? N6 X4D 803 B 1 
#
_model_server_stats.io_time_ms              124 
_model_server_stats.parse_time_ms           163 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#