data_3WSA # _model_server_result.job_id zvKWZyNk9O-NC6sjfhvHTA _model_server_result.datetime_utc '2024-11-22 05:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 3WSA # _exptl.entry_id 3WSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.38 _cell.angle_gamma 90 _cell.entry_id 3WSA _cell.length_a 85.75 _cell.length_b 154.006 _cell.length_c 90.615 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,G,H,I,K,L,M 2 1 D,E,F,J,N,O,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C22 H38 N2' _chem_comp.formula_weight 330.551 _chem_comp.id RWZ _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAR RWZ sing 277 n n CAA HAA RWZ sing 278 n n CAA HAAA RWZ sing 279 n n CAA HAAB RWZ sing 280 n n CAR CAB RWZ sing 281 n n CAB HAB RWZ sing 282 n n CAB HABA RWZ sing 283 n n CAB HABB RWZ sing 284 n n CAC CAS RWZ sing 285 n n CAC HAC RWZ sing 286 n n CAC HACA RWZ sing 287 n n CAC HACB RWZ sing 288 n n CAD CAF RWZ sing 289 n n CAD CAR RWZ doub 290 n n CAD HAD RWZ sing 291 n n CAE CAG RWZ sing 292 z n CAE CAS RWZ doub 293 n n CAE HAE RWZ sing 294 n n CAJ CAF RWZ sing 295 n n CAF HAF RWZ sing 296 n n CAF HAFA RWZ sing 297 n n CAG NAP RWZ sing 298 n n CAG HAG RWZ sing 299 n n CAG HAGA RWZ sing 300 n n CAH NAP RWZ sing 301 n n CAH CAI RWZ sing 302 n n CAH HAH RWZ sing 303 n n CAH HAHA RWZ sing 304 n n NAQ CAI RWZ sing 305 n n CAI HAI RWZ sing 306 n n CAI HAIA RWZ sing 307 n n CAS CAJ RWZ sing 308 n n CAJ HAJ RWZ sing 309 n n CAJ HAJA RWZ sing 310 n n CAU CAK RWZ sing 311 n n CAT CAK RWZ sing 312 n n CAK HAK RWZ sing 313 n n CAK HAKA RWZ sing 314 n n CAV CAL RWZ sing 315 n n CAL CAT RWZ sing 316 n n CAL HAL RWZ sing 317 n n CAL HALA RWZ sing 318 n n CAV CAM RWZ sing 319 n n CAM CAU RWZ sing 320 n n CAM HAM RWZ sing 321 n n CAM HAMA RWZ sing 322 n n CAW CAN RWZ sing 323 n n CAT CAN RWZ sing 324 n n CAN HAN RWZ sing 325 n n CAN HANA RWZ sing 326 n n CAW CAO RWZ sing 327 n n CAU CAO RWZ sing 328 n n CAO HAO RWZ sing 329 n n CAO HAOA RWZ sing 330 n n NAP HNAP RWZ sing 331 n n NAQ CAX RWZ sing 332 n n NAQ HNAQ RWZ sing 333 n n CAT HAT RWZ sing 334 n n CAU HAU RWZ sing 335 n n CAV CAX RWZ sing 336 n n CAV HAV RWZ sing 337 n n CAX CAW RWZ sing 338 n n CAW HAW RWZ sing 339 n n CAX HAX RWZ sing 340 n n # _atom_sites.entry_id 3WSA _atom_sites.fract_transf_matrix[1][1] 0.011662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000281 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 RWZ A 1 901 901 RWZ RWZ . H 2 RWZ B 1 401 902 RWZ RWZ . I 2 RWZ C 1 401 903 RWZ RWZ . J 2 RWZ E 1 401 904 RWZ RWZ . K 3 HOH A 1 1001 5 HOH HOH . K 3 HOH A 2 1002 13 HOH HOH . K 3 HOH A 3 1003 18 HOH HOH . K 3 HOH A 4 1004 20 HOH HOH . K 3 HOH A 5 1005 27 HOH HOH . K 3 HOH A 6 1006 29 HOH HOH . K 3 HOH A 7 1007 32 HOH HOH . K 3 HOH A 8 1008 36 HOH HOH . K 3 HOH A 9 1009 37 HOH HOH . K 3 HOH A 10 1010 38 HOH HOH . K 3 HOH A 11 1011 51 HOH HOH . K 3 HOH A 12 1012 53 HOH HOH . K 3 HOH A 13 1013 56 HOH HOH . K 3 HOH A 14 1014 58 HOH HOH . K 3 HOH A 15 1015 61 HOH HOH . K 3 HOH A 16 1016 65 HOH HOH . K 3 HOH A 17 1017 72 HOH HOH . K 3 HOH A 18 1018 73 HOH HOH . K 3 HOH A 19 1019 77 HOH HOH . K 3 HOH A 20 1020 91 HOH HOH . K 3 HOH A 21 1021 95 HOH HOH . K 3 HOH A 22 1022 96 HOH HOH . K 3 HOH A 23 1023 107 HOH HOH . K 3 HOH A 24 1024 108 HOH HOH . K 3 HOH A 25 1025 109 HOH HOH . K 3 HOH A 26 1026 130 HOH HOH . K 3 HOH A 27 1027 136 HOH HOH . K 3 HOH A 28 1028 141 HOH HOH . K 3 HOH A 29 1029 145 HOH HOH . K 3 HOH A 30 1030 146 HOH HOH . K 3 HOH A 31 1031 150 HOH HOH . K 3 HOH A 32 1032 151 HOH HOH . K 3 HOH A 33 1033 153 HOH HOH . K 3 HOH A 34 1034 168 HOH HOH . K 3 HOH A 35 1035 170 HOH HOH . K 3 HOH A 36 1036 177 HOH HOH . K 3 HOH A 37 1037 181 HOH HOH . K 3 HOH A 38 1038 184 HOH HOH . K 3 HOH A 39 1039 186 HOH HOH . K 3 HOH A 40 1040 198 HOH HOH . K 3 HOH A 41 1041 199 HOH HOH . K 3 HOH A 42 1042 200 HOH HOH . K 3 HOH A 43 1043 207 HOH HOH . K 3 HOH A 44 1044 220 HOH HOH . K 3 HOH A 45 1045 222 HOH HOH . L 3 HOH B 1 501 1 HOH HOH . L 3 HOH B 2 502 3 HOH HOH . L 3 HOH B 3 503 14 HOH HOH . L 3 HOH B 4 504 23 HOH HOH . L 3 HOH B 5 505 28 HOH HOH . L 3 HOH B 6 506 45 HOH HOH . L 3 HOH B 7 507 46 HOH HOH . L 3 HOH B 8 508 48 HOH HOH . L 3 HOH B 9 509 54 HOH HOH . L 3 HOH B 10 510 62 HOH HOH . L 3 HOH B 11 511 69 HOH HOH . L 3 HOH B 12 512 70 HOH HOH . L 3 HOH B 13 513 76 HOH HOH . L 3 HOH B 14 514 79 HOH HOH . L 3 HOH B 15 515 81 HOH HOH . L 3 HOH B 16 516 82 HOH HOH . L 3 HOH B 17 517 84 HOH HOH . L 3 HOH B 18 518 90 HOH HOH . L 3 HOH B 19 519 92 HOH HOH . L 3 HOH B 20 520 94 HOH HOH . L 3 HOH B 21 521 104 HOH HOH . L 3 HOH B 22 522 105 HOH HOH . L 3 HOH B 23 523 111 HOH HOH . L 3 HOH B 24 524 113 HOH HOH . L 3 HOH B 25 525 115 HOH HOH . L 3 HOH B 26 526 117 HOH HOH . L 3 HOH B 27 527 119 HOH HOH . L 3 HOH B 28 528 121 HOH HOH . L 3 HOH B 29 529 124 HOH HOH . L 3 HOH B 30 530 128 HOH HOH . L 3 HOH B 31 531 132 HOH HOH . L 3 HOH B 32 532 140 HOH HOH . L 3 HOH B 33 533 148 HOH HOH . L 3 HOH B 34 534 149 HOH HOH . L 3 HOH B 35 535 157 HOH HOH . L 3 HOH B 36 536 158 HOH HOH . L 3 HOH B 37 537 165 HOH HOH . L 3 HOH B 38 538 167 HOH HOH . L 3 HOH B 39 539 171 HOH HOH . L 3 HOH B 40 540 172 HOH HOH . L 3 HOH B 41 541 179 HOH HOH . L 3 HOH B 42 542 189 HOH HOH . L 3 HOH B 43 543 191 HOH HOH . L 3 HOH B 44 544 194 HOH HOH . L 3 HOH B 45 545 208 HOH HOH . L 3 HOH B 46 546 212 HOH HOH . L 3 HOH B 47 547 218 HOH HOH . L 3 HOH B 48 548 219 HOH HOH . L 3 HOH B 49 549 221 HOH HOH . M 3 HOH C 1 501 6 HOH HOH . M 3 HOH C 2 502 7 HOH HOH . M 3 HOH C 3 503 9 HOH HOH . M 3 HOH C 4 504 16 HOH HOH . M 3 HOH C 5 505 17 HOH HOH . M 3 HOH C 6 506 19 HOH HOH . M 3 HOH C 7 507 33 HOH HOH . M 3 HOH C 8 508 34 HOH HOH . M 3 HOH C 9 509 40 HOH HOH . M 3 HOH C 10 510 42 HOH HOH . M 3 HOH C 11 511 47 HOH HOH . M 3 HOH C 12 512 63 HOH HOH . M 3 HOH C 13 513 64 HOH HOH . M 3 HOH C 14 514 74 HOH HOH . M 3 HOH C 15 515 78 HOH HOH . M 3 HOH C 16 516 83 HOH HOH . M 3 HOH C 17 517 85 HOH HOH . M 3 HOH C 18 518 87 HOH HOH . M 3 HOH C 19 519 98 HOH HOH . M 3 HOH C 20 520 99 HOH HOH . M 3 HOH C 21 521 110 HOH HOH . M 3 HOH C 22 522 120 HOH HOH . M 3 HOH C 23 523 123 HOH HOH . M 3 HOH C 24 524 127 HOH HOH . M 3 HOH C 25 525 131 HOH HOH . M 3 HOH C 26 526 134 HOH HOH . M 3 HOH C 27 527 137 HOH HOH . M 3 HOH C 28 528 139 HOH HOH . M 3 HOH C 29 529 143 HOH HOH . M 3 HOH C 30 530 161 HOH HOH . M 3 HOH C 31 531 162 HOH HOH . M 3 HOH C 32 532 166 HOH HOH . M 3 HOH C 33 533 173 HOH HOH . M 3 HOH C 34 534 175 HOH HOH . M 3 HOH C 35 535 176 HOH HOH . M 3 HOH C 36 536 182 HOH HOH . M 3 HOH C 37 537 188 HOH HOH . M 3 HOH C 38 538 190 HOH HOH . M 3 HOH C 39 539 196 HOH HOH . M 3 HOH C 40 540 203 HOH HOH . M 3 HOH C 41 541 205 HOH HOH . M 3 HOH C 42 542 213 HOH HOH . M 3 HOH C 43 543 214 HOH HOH . N 3 HOH D 1 401 2 HOH HOH . N 3 HOH D 2 402 4 HOH HOH . N 3 HOH D 3 403 8 HOH HOH . N 3 HOH D 4 404 12 HOH HOH . N 3 HOH D 5 405 21 HOH HOH . N 3 HOH D 6 406 22 HOH HOH . N 3 HOH D 7 407 24 HOH HOH . N 3 HOH D 8 408 25 HOH HOH . N 3 HOH D 9 409 30 HOH HOH . N 3 HOH D 10 410 31 HOH HOH . N 3 HOH D 11 411 41 HOH HOH . N 3 HOH D 12 412 50 HOH HOH . N 3 HOH D 13 413 55 HOH HOH . N 3 HOH D 14 414 59 HOH HOH . N 3 HOH D 15 415 60 HOH HOH . N 3 HOH D 16 416 67 HOH HOH . N 3 HOH D 17 417 68 HOH HOH . N 3 HOH D 18 418 71 HOH HOH . N 3 HOH D 19 419 75 HOH HOH . N 3 HOH D 20 420 80 HOH HOH . N 3 HOH D 21 421 88 HOH HOH . N 3 HOH D 22 422 100 HOH HOH . N 3 HOH D 23 423 106 HOH HOH . N 3 HOH D 24 424 112 HOH HOH . N 3 HOH D 25 425 118 HOH HOH . N 3 HOH D 26 426 133 HOH HOH . N 3 HOH D 27 427 135 HOH HOH . N 3 HOH D 28 428 138 HOH HOH . N 3 HOH D 29 429 142 HOH HOH . N 3 HOH D 30 430 144 HOH HOH . N 3 HOH D 31 431 147 HOH HOH . N 3 HOH D 32 432 156 HOH HOH . N 3 HOH D 33 433 159 HOH HOH . N 3 HOH D 34 434 160 HOH HOH . N 3 HOH D 35 435 163 HOH HOH . N 3 HOH D 36 436 169 HOH HOH . N 3 HOH D 37 437 183 HOH HOH . N 3 HOH D 38 438 187 HOH HOH . N 3 HOH D 39 439 195 HOH HOH . N 3 HOH D 40 440 197 HOH HOH . N 3 HOH D 41 441 201 HOH HOH . N 3 HOH D 42 442 206 HOH HOH . N 3 HOH D 43 443 215 HOH HOH . N 3 HOH D 44 444 216 HOH HOH . N 3 HOH D 45 445 217 HOH HOH . O 3 HOH E 1 501 26 HOH HOH . O 3 HOH E 2 502 39 HOH HOH . O 3 HOH E 3 503 49 HOH HOH . O 3 HOH E 4 504 52 HOH HOH . O 3 HOH E 5 505 57 HOH HOH . O 3 HOH E 6 506 86 HOH HOH . O 3 HOH E 7 507 89 HOH HOH . O 3 HOH E 8 508 97 HOH HOH . O 3 HOH E 9 509 102 HOH HOH . O 3 HOH E 10 510 114 HOH HOH . O 3 HOH E 11 511 116 HOH HOH . O 3 HOH E 12 512 126 HOH HOH . O 3 HOH E 13 513 154 HOH HOH . O 3 HOH E 14 514 155 HOH HOH . O 3 HOH E 15 515 174 HOH HOH . O 3 HOH E 16 516 193 HOH HOH . O 3 HOH E 17 517 202 HOH HOH . O 3 HOH E 18 518 204 HOH HOH . O 3 HOH E 19 519 209 HOH HOH . O 3 HOH E 20 520 210 HOH HOH . P 3 HOH F 1 401 10 HOH HOH . P 3 HOH F 2 402 11 HOH HOH . P 3 HOH F 3 403 15 HOH HOH . P 3 HOH F 4 404 35 HOH HOH . P 3 HOH F 5 405 43 HOH HOH . P 3 HOH F 6 406 44 HOH HOH . P 3 HOH F 7 407 66 HOH HOH . P 3 HOH F 8 408 93 HOH HOH . P 3 HOH F 9 409 101 HOH HOH . P 3 HOH F 10 410 103 HOH HOH . P 3 HOH F 11 411 122 HOH HOH . P 3 HOH F 12 412 125 HOH HOH . P 3 HOH F 13 413 152 HOH HOH . P 3 HOH F 14 414 164 HOH HOH . P 3 HOH F 15 415 180 HOH HOH . P 3 HOH F 16 416 192 HOH HOH . P 3 HOH F 17 417 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA RWZ . . . J 2 30.591 -27.569 -38.688 1 58.34 ? CAA RWZ 401 E 1 HETATM 2 C CAB RWZ . . . J 2 28.072 -26.943 -38.628 1 57.35 ? CAB RWZ 401 E 1 HETATM 3 C CAC RWZ . . . J 2 26.19 -24.863 -43.469 1 62.82 ? CAC RWZ 401 E 1 HETATM 4 C CAD RWZ . . . J 2 29.494 -26.274 -40.551 1 57.84 ? CAD RWZ 401 E 1 HETATM 5 C CAE RWZ . . . J 2 28.275 -23.592 -44.053 1 64.08 ? CAE RWZ 401 E 1 HETATM 6 C CAF RWZ . . . J 2 28.354 -25.59 -41.256 1 59.35 ? CAF RWZ 401 E 1 HETATM 7 C CAG RWZ . . . J 2 27.428 -22.549 -44.76 1 66.34 ? CAG RWZ 401 E 1 HETATM 8 C CAH RWZ . . . J 2 26.746 -22.323 -47.196 1 69.56 ? CAH RWZ 401 E 1 HETATM 9 C CAI RWZ . . . J 2 26.742 -20.888 -47.623 1 70.86 ? CAI RWZ 401 E 1 HETATM 10 C CAJ RWZ . . . J 2 28.542 -25.713 -42.741 1 61.25 ? CAJ RWZ 401 E 1 HETATM 11 C CAK RWZ . . . J 2 23.08 -18.004 -44.05 1 70.97 ? CAK RWZ 401 E 1 HETATM 12 C CAL RWZ . . . J 2 23.907 -20.279 -44.767 1 71.11 ? CAL RWZ 401 E 1 HETATM 13 C CAM RWZ . . . J 2 22.831 -18.768 -46.456 1 70.04 ? CAM RWZ 401 E 1 HETATM 14 C CAN RWZ . . . J 2 25.574 -18.445 -44.19 1 72.02 ? CAN RWZ 401 E 1 HETATM 15 C CAO RWZ . . . J 2 24.463 -16.925 -45.871 1 71.3 ? CAO RWZ 401 E 1 HETATM 16 N NAP RWZ . . . J 2 27.766 -22.518 -46.178 1 68.57 ? NAP RWZ 401 E 1 HETATM 17 N NAQ RWZ . . . J 2 26.296 -20.105 -46.488 1 70.62 ? NAQ RWZ 401 E 1 HETATM 18 C CAR RWZ . . . J 2 29.399 -26.909 -39.332 1 57.85 ? CAR RWZ 401 E 1 HETATM 19 C CAS RWZ . . . J 2 27.684 -24.691 -43.438 1 62.84 ? CAS RWZ 401 E 1 HETATM 20 C CAT RWZ . . . J 2 24.182 -19.06 -43.837 1 71.2 ? CAT RWZ 401 E 1 HETATM 21 C CAU RWZ . . . J 2 23.089 -17.548 -45.527 1 70.5 ? CAU RWZ 401 E 1 HETATM 22 C CAV RWZ . . . J 2 23.929 -19.828 -46.249 1 70.86 ? CAV RWZ 401 E 1 HETATM 23 C CAW RWZ . . . J 2 25.578 -17.982 -45.671 1 71.63 ? CAW RWZ 401 E 1 HETATM 24 C CAX RWZ . . . J 2 25.308 -19.2 -46.603 1 71.08 ? CAX RWZ 401 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #