data_3WSJ
#
_model_server_result.job_id            GSnjadRc92ML6zOgXU1_YA 
_model_server_result.datetime_utc      '2024-11-16 19:58:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wsj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    3WSJ 
#
_exptl.entry_id    3WSJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              613.789 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WSJ 
_cell.length_a            77.26 
_cell.length_b            77.26 
_cell.length_c            159.34 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WSJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 38.63 -66.909123 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 77.26 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H47 N5 O4' 
_chem_comp.formula_weight    613.789 
_chem_comp.id                MK1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     INDINAVIR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 MK1 sing 237 n n 
N1 C9 MK1 sing 238 n n 
N1 C31 MK1 sing 239 n n 
C1 C2 MK1 sing 240 n n 
C1 H11A MK1 sing 241 n n 
C1 H12 MK1 sing 242 n n 
C2 C3 MK1 sing 243 n n 
C2 N3 MK1 sing 244 n n 
C2 H2 MK1 sing 245 n n 
C3 O1 MK1 doub 246 n n 
C3 N2 MK1 sing 247 n n 
N2 C4 MK1 sing 248 n n 
N2 HN2 MK1 sing 249 n n 
C4 C5 MK1 sing 250 n n 
C4 C6 MK1 sing 251 n n 
C4 C7 MK1 sing 252 n n 
C5 H51 MK1 sing 253 n n 
C5 H52 MK1 sing 254 n n 
C5 H53 MK1 sing 255 n n 
C6 H61 MK1 sing 256 n n 
C6 H62 MK1 sing 257 n n 
C6 H63 MK1 sing 258 n n 
C7 H71 MK1 sing 259 n n 
C7 H72 MK1 sing 260 n n 
C7 H73 MK1 sing 261 n n 
N3 C8 MK1 sing 262 n n 
N3 C10 MK1 sing 263 n n 
C8 C9 MK1 sing 264 n n 
C8 H81 MK1 sing 265 n n 
C8 H82 MK1 sing 266 n n 
C9 H91 MK1 sing 267 n n 
C9 H92 MK1 sing 268 n n 
C10 C11 MK1 sing 269 n n 
C10 H101 MK1 sing 270 n n 
C10 H102 MK1 sing 271 n n 
C11 O2 MK1 sing 272 n n 
C11 C12 MK1 sing 273 n n 
C11 H11 MK1 sing 274 n n 
O2 HO2 MK1 sing 275 n n 
C12 C13 MK1 sing 276 n n 
C12 H121 MK1 sing 277 n n 
C12 H122 MK1 sing 278 n n 
C13 C14 MK1 sing 279 n n 
C13 C21 MK1 sing 280 n n 
C13 H13 MK1 sing 281 n n 
C14 C15 MK1 sing 282 n n 
C14 H141 MK1 sing 283 n n 
C14 H142 MK1 sing 284 n n 
C15 C16 MK1 doub 285 n y 
C15 C20 MK1 sing 286 n y 
C16 C17 MK1 sing 287 n y 
C16 H16 MK1 sing 288 n n 
C17 C18 MK1 doub 289 n y 
C17 H17 MK1 sing 290 n n 
C18 C19 MK1 sing 291 n y 
C18 H18 MK1 sing 292 n n 
C19 C20 MK1 doub 293 n y 
C19 H19 MK1 sing 294 n n 
C20 H20 MK1 sing 295 n n 
C21 O3 MK1 doub 296 n n 
C21 N4 MK1 sing 297 n n 
N4 C22 MK1 sing 298 n n 
N4 HN4 MK1 sing 299 n n 
C22 C23 MK1 sing 300 n n 
C22 C30 MK1 sing 301 n n 
C22 H22 MK1 sing 302 n n 
C23 O4 MK1 sing 303 n n 
C23 C24 MK1 sing 304 n n 
C23 H23 MK1 sing 305 n n 
O4 HO4 MK1 sing 306 n n 
C24 C25 MK1 sing 307 n n 
C24 H241 MK1 sing 308 n n 
C24 H242 MK1 sing 309 n n 
C25 C26 MK1 doub 310 n y 
C25 C30 MK1 sing 311 n y 
C26 C27 MK1 sing 312 n y 
C26 H26 MK1 sing 313 n n 
C27 C28 MK1 doub 314 n y 
C27 H27 MK1 sing 315 n n 
C28 C29 MK1 sing 316 n y 
C28 H28 MK1 sing 317 n n 
C29 C30 MK1 doub 318 n y 
C29 H29 MK1 sing 319 n n 
C31 C32 MK1 sing 320 n n 
C31 H311 MK1 sing 321 n n 
C31 H312 MK1 sing 322 n n 
C32 C33 MK1 sing 323 n y 
C32 C36 MK1 doub 324 n y 
C33 N5 MK1 doub 325 n y 
C33 H33 MK1 sing 326 n n 
N5 C34 MK1 sing 327 n y 
C34 C35 MK1 doub 328 n y 
C34 H34 MK1 sing 329 n n 
C35 C36 MK1 sing 330 n y 
C35 H35 MK1 sing 331 n n 
C36 H36 MK1 sing 332 n n 
#
_atom_sites.entry_id                     3WSJ 
_atom_sites.fract_transf_matrix[1][1]    0.012943 
_atom_sites.fract_transf_matrix[1][2]    0.007473 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006276 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MK1 A 1 201 1 MK1 INX . 
D 3 SO4 A 1 202 1 SO4 SO4 . 
E 3 SO4 A 1 203 2 SO4 SO4 . 
F 3 SO4 A 1 204 3 SO4 SO4 . 
G 3 SO4 A 1 205 4 SO4 SO4 . 
H 3 SO4 A 1 206 5 SO4 SO4 . 
I 3 SO4 A 1 207 6 SO4 SO4 . 
J 3 SO4 A 1 208 7 SO4 SO4 . 
K 3 SO4 A 1 209 9 SO4 SO4 . 
L 3 SO4 A 1 210 12 SO4 SO4 . 
M 3 SO4 A 1 211 13 SO4 SO4 . 
N 4 PG4 A 1 212 1 PG4 PG4 . 
O 3 SO4 B 1 201 10 SO4 SO4 . 
P 3 SO4 B 1 202 11 SO4 SO4 . 
Q 3 SO4 B 1 203 14 SO4 SO4 . 
R 5 HOH A 1 301 1 HOH HOH . 
R 5 HOH A 2 302 3 HOH HOH . 
R 5 HOH A 3 303 4 HOH HOH . 
R 5 HOH A 4 304 5 HOH HOH . 
R 5 HOH A 5 305 10 HOH HOH . 
R 5 HOH A 6 306 11 HOH HOH . 
R 5 HOH A 7 307 12 HOH HOH . 
R 5 HOH A 8 308 13 HOH HOH . 
R 5 HOH A 9 309 17 HOH HOH . 
R 5 HOH A 10 310 18 HOH HOH . 
R 5 HOH A 11 311 19 HOH HOH . 
R 5 HOH A 12 312 20 HOH HOH . 
R 5 HOH A 13 313 21 HOH HOH . 
R 5 HOH A 14 314 23 HOH HOH . 
R 5 HOH A 15 315 24 HOH HOH . 
R 5 HOH A 16 316 25 HOH HOH . 
R 5 HOH A 17 317 26 HOH HOH . 
R 5 HOH A 18 318 28 HOH HOH . 
R 5 HOH A 19 319 29 HOH HOH . 
R 5 HOH A 20 320 43 HOH HOH . 
R 5 HOH A 21 321 44 HOH HOH . 
R 5 HOH A 22 322 45 HOH HOH . 
R 5 HOH A 23 323 47 HOH HOH . 
R 5 HOH A 24 324 48 HOH HOH . 
R 5 HOH A 25 325 49 HOH HOH . 
R 5 HOH A 26 326 50 HOH HOH . 
R 5 HOH A 27 327 51 HOH HOH . 
R 5 HOH A 28 328 52 HOH HOH . 
R 5 HOH A 29 329 60 HOH HOH . 
R 5 HOH A 30 330 61 HOH HOH . 
R 5 HOH A 31 331 62 HOH HOH . 
R 5 HOH A 32 332 63 HOH HOH . 
R 5 HOH A 33 333 64 HOH HOH . 
R 5 HOH A 34 334 65 HOH HOH . 
R 5 HOH A 35 335 66 HOH HOH . 
R 5 HOH A 36 336 71 HOH HOH . 
S 5 HOH B 1 301 2 HOH HOH . 
S 5 HOH B 2 302 6 HOH HOH . 
S 5 HOH B 3 303 7 HOH HOH . 
S 5 HOH B 4 304 8 HOH HOH . 
S 5 HOH B 5 305 9 HOH HOH . 
S 5 HOH B 6 306 14 HOH HOH . 
S 5 HOH B 7 307 22 HOH HOH . 
S 5 HOH B 8 308 27 HOH HOH . 
S 5 HOH B 9 309 30 HOH HOH . 
S 5 HOH B 10 310 31 HOH HOH . 
S 5 HOH B 11 311 32 HOH HOH . 
S 5 HOH B 12 312 33 HOH HOH . 
S 5 HOH B 13 313 34 HOH HOH . 
S 5 HOH B 14 314 35 HOH HOH . 
S 5 HOH B 15 315 36 HOH HOH . 
S 5 HOH B 16 316 38 HOH HOH . 
S 5 HOH B 17 317 39 HOH HOH . 
S 5 HOH B 18 318 40 HOH HOH . 
S 5 HOH B 19 319 41 HOH HOH . 
S 5 HOH B 20 320 42 HOH HOH . 
S 5 HOH B 21 321 46 HOH HOH . 
S 5 HOH B 22 322 53 HOH HOH . 
S 5 HOH B 23 323 54 HOH HOH . 
S 5 HOH B 24 324 55 HOH HOH . 
S 5 HOH B 25 325 56 HOH HOH . 
S 5 HOH B 26 326 57 HOH HOH . 
S 5 HOH B 27 327 58 HOH HOH . 
S 5 HOH B 28 328 59 HOH HOH . 
S 5 HOH B 29 329 67 HOH HOH . 
S 5 HOH B 30 330 68 HOH HOH . 
S 5 HOH B 31 331 69 HOH HOH . 
S 5 HOH B 32 332 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MK1 . . . C 2 41.294 -3.879 25.479 1 49.99 ? N1 MK1 201 A 1 
HETATM 2 C C1 MK1 . . . C 2 39.918 -3.921 26.024 1 53.67 ? C1 MK1 201 A 1 
HETATM 3 C C2 MK1 . . . C 2 38.884 -3.27 25.083 1 47.13 ? C2 MK1 201 A 1 
HETATM 4 C C3 MK1 . . . C 2 37.563 -3.146 25.811 1 52.22 ? C3 MK1 201 A 1 
HETATM 5 O O1 MK1 . . . C 2 37.422 -2.213 26.571 1 54.7 ? O1 MK1 201 A 1 
HETATM 6 N N2 MK1 . . . C 2 36.535 -4.07 25.637 1 53.29 ? N2 MK1 201 A 1 
HETATM 7 C C4 MK1 . . . C 2 35.092 -3.824 25.852 1 51.27 ? C4 MK1 201 A 1 
HETATM 8 C C5 MK1 . . . C 2 34.795 -3.648 27.348 1 56.57 ? C5 MK1 201 A 1 
HETATM 9 C C6 MK1 . . . C 2 34.264 -4.998 25.324 1 46.92 ? C6 MK1 201 A 1 
HETATM 10 C C7 MK1 . . . C 2 34.661 -2.566 25.098 1 35.56 ? C7 MK1 201 A 1 
HETATM 11 N N3 MK1 . . . C 2 39.301 -1.919 24.636 1 42.68 ? N3 MK1 201 A 1 
HETATM 12 C C8 MK1 . . . C 2 40.648 -1.982 24.043 1 45.27 ? C8 MK1 201 A 1 
HETATM 13 C C9 MK1 . . . C 2 41.665 -2.514 25.057 1 46.48 ? C9 MK1 201 A 1 
HETATM 14 C C10 MK1 . . . C 2 38.351 -1.237 23.735 1 45.15 ? C10 MK1 201 A 1 
HETATM 15 C C11 MK1 . . . C 2 38.601 0.275 23.714 1 40.34 ? C11 MK1 201 A 1 
HETATM 16 O O2 MK1 . . . C 2 38.967 0.636 22.396 1 35.52 ? O2 MK1 201 A 1 
HETATM 17 C C12 MK1 . . . C 2 37.291 0.991 24.102 1 37.98 ? C12 MK1 201 A 1 
HETATM 18 C C13 MK1 . . . C 2 37.206 2.503 23.796 1 34.83 ? C13 MK1 201 A 1 
HETATM 19 C C14 MK1 . . . C 2 35.819 3.054 24.217 1 39.39 ? C14 MK1 201 A 1 
HETATM 20 C C15 MK1 . . . C 2 35.633 4.562 24.387 1 40.29 ? C15 MK1 201 A 1 
HETATM 21 C C16 MK1 . . . C 2 35.157 5.033 25.604 1 39.49 ? C16 MK1 201 A 1 
HETATM 22 C C17 MK1 . . . C 2 34.97 6.391 25.807 1 42.15 ? C17 MK1 201 A 1 
HETATM 23 C C18 MK1 . . . C 2 35.26 7.287 24.793 1 43.38 ? C18 MK1 201 A 1 
HETATM 24 C C19 MK1 . . . C 2 35.734 6.825 23.577 1 43.3 ? C19 MK1 201 A 1 
HETATM 25 C C20 MK1 . . . C 2 35.921 5.467 23.373 1 41 ? C20 MK1 201 A 1 
HETATM 26 C C21 MK1 . . . C 2 38.25 3.246 24.598 1 37.59 ? C21 MK1 201 A 1 
HETATM 27 O O3 MK1 . . . C 2 38.512 2.862 25.712 1 43.12 ? O3 MK1 201 A 1 
HETATM 28 N N4 MK1 . . . C 2 38.907 4.346 24.095 1 39.24 ? N4 MK1 201 A 1 
HETATM 29 C C22 MK1 . . . C 2 39.718 5.23 24.938 1 40.89 ? C22 MK1 201 A 1 
HETATM 30 C C23 MK1 . . . C 2 39.656 6.675 24.464 1 42.71 ? C23 MK1 201 A 1 
HETATM 31 O O4 MK1 . . . C 2 39.178 6.755 23.128 1 37.77 ? O4 MK1 201 A 1 
HETATM 32 C C24 MK1 . . . C 2 41.091 7.236 24.52 1 46.54 ? C24 MK1 201 A 1 
HETATM 33 C C25 MK1 . . . C 2 41.902 5.95 24.586 1 47.3 ? C25 MK1 201 A 1 
HETATM 34 C C26 MK1 . . . C 2 43.267 5.833 24.437 1 49.61 ? C26 MK1 201 A 1 
HETATM 35 C C27 MK1 . . . C 2 43.827 4.567 24.529 1 51.66 ? C27 MK1 201 A 1 
HETATM 36 C C28 MK1 . . . C 2 43.039 3.443 24.767 1 48.21 ? C28 MK1 201 A 1 
HETATM 37 C C29 MK1 . . . C 2 41.667 3.573 24.916 1 44.09 ? C29 MK1 201 A 1 
HETATM 38 C C30 MK1 . . . C 2 41.129 4.839 24.819 1 42.23 ? C30 MK1 201 A 1 
HETATM 39 C C31 MK1 . . . C 2 42.289 -4.393 26.44 1 55.51 ? C31 MK1 201 A 1 
HETATM 40 C C32 MK1 . . . C 2 43.492 -4.959 25.717 1 62.67 ? C32 MK1 201 A 1 
HETATM 41 C C33 MK1 . . . C 2 43.416 -6.187 25.086 1 63.87 ? C33 MK1 201 A 1 
HETATM 42 N N5 MK1 . . . C 2 44.529 -6.68 24.425 1 67.42 ? N5 MK1 201 A 1 
HETATM 43 C C34 MK1 . . . C 2 45.713 -5.965 24.386 1 65.86 ? C34 MK1 201 A 1 
HETATM 44 C C35 MK1 . . . C 2 45.79 -4.737 25.015 1 62.52 ? C35 MK1 201 A 1 
HETATM 45 C C36 MK1 . . . C 2 44.679 -4.241 25.675 1 63.2 ? C36 MK1 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           45 
#