data_3WSX # _model_server_result.job_id d9XutSco2QDiunDxWPyJMQ _model_server_result.datetime_utc '2025-03-06 09:03:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 3WSX # _exptl.entry_id 3WSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WSX _cell.length_a 126.371 _cell.length_b 126.371 _cell.length_c 290.282 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 597 A CYS 625 1_555 A SG CYS 632 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf2 A SG CYS 615 A CYS 643 1_555 A SG CYS 647 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf3 A SG CYS 649 A CYS 677 1_555 A SG CYS 708 A CYS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf4 A SG CYS 656 A CYS 684 1_555 A SG CYS 671 A CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A ND2 ASN 130 A ASN 158 1_555 B C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 588 A ASN 616 1_555 C C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 646 A ASN 674 1_555 D C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3WSX _atom_sites.fract_transf_matrix[1][1] 0.007913 _atom_sites.fract_transf_matrix[1][2] 0.004569 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 800 NAG NAG . C 2 NAG A 1 802 801 NAG NAG . D 2 NAG A 1 803 802 NAG NAG . E 3 PO4 A 1 804 900 PO4 PO4 . F 3 PO4 A 1 805 901 PO4 PO4 . G 3 PO4 A 1 806 902 PO4 PO4 . H 3 PO4 A 1 807 903 PO4 PO4 . I 4 EDO A 1 808 910 EDO EDO . J 4 EDO A 1 809 911 EDO EDO . K 4 EDO A 1 810 912 EDO EDO . L 4 EDO A 1 811 913 EDO EDO . M 4 EDO A 1 812 914 EDO EDO . N 4 EDO A 1 813 915 EDO EDO . O 5 HOH A 1 901 1 HOH HOH . O 5 HOH A 2 902 2 HOH HOH . O 5 HOH A 3 903 3 HOH HOH . O 5 HOH A 4 904 5 HOH HOH . O 5 HOH A 5 905 6 HOH HOH . O 5 HOH A 6 906 7 HOH HOH . O 5 HOH A 7 907 8 HOH HOH . O 5 HOH A 8 908 9 HOH HOH . O 5 HOH A 9 909 10 HOH HOH . O 5 HOH A 10 910 11 HOH HOH . O 5 HOH A 11 911 12 HOH HOH . O 5 HOH A 12 912 13 HOH HOH . O 5 HOH A 13 913 15 HOH HOH . O 5 HOH A 14 914 16 HOH HOH . O 5 HOH A 15 915 17 HOH HOH . O 5 HOH A 16 916 18 HOH HOH . O 5 HOH A 17 917 19 HOH HOH . O 5 HOH A 18 918 20 HOH HOH . O 5 HOH A 19 919 21 HOH HOH . O 5 HOH A 20 920 22 HOH HOH . O 5 HOH A 21 921 23 HOH HOH . O 5 HOH A 22 922 24 HOH HOH . O 5 HOH A 23 923 25 HOH HOH . O 5 HOH A 24 924 26 HOH HOH . O 5 HOH A 25 925 27 HOH HOH . O 5 HOH A 26 926 28 HOH HOH . O 5 HOH A 27 927 29 HOH HOH . O 5 HOH A 28 928 30 HOH HOH . O 5 HOH A 29 929 31 HOH HOH . O 5 HOH A 30 930 32 HOH HOH . O 5 HOH A 31 931 33 HOH HOH . O 5 HOH A 32 932 34 HOH HOH . O 5 HOH A 33 933 35 HOH HOH . O 5 HOH A 34 934 36 HOH HOH . O 5 HOH A 35 935 37 HOH HOH . O 5 HOH A 36 936 38 HOH HOH . O 5 HOH A 37 937 39 HOH HOH . O 5 HOH A 38 938 40 HOH HOH . O 5 HOH A 39 939 41 HOH HOH . O 5 HOH A 40 940 42 HOH HOH . O 5 HOH A 41 941 44 HOH HOH . O 5 HOH A 42 942 45 HOH HOH . O 5 HOH A 43 943 46 HOH HOH . O 5 HOH A 44 944 47 HOH HOH . O 5 HOH A 45 945 48 HOH HOH . O 5 HOH A 46 946 49 HOH HOH . O 5 HOH A 47 947 50 HOH HOH . O 5 HOH A 48 948 51 HOH HOH . O 5 HOH A 49 949 52 HOH HOH . O 5 HOH A 50 950 55 HOH HOH . O 5 HOH A 51 951 57 HOH HOH . O 5 HOH A 52 952 58 HOH HOH . O 5 HOH A 53 953 59 HOH HOH . O 5 HOH A 54 954 60 HOH HOH . O 5 HOH A 55 955 61 HOH HOH . O 5 HOH A 56 956 62 HOH HOH . O 5 HOH A 57 957 63 HOH HOH . O 5 HOH A 58 958 64 HOH HOH . O 5 HOH A 59 959 66 HOH HOH . O 5 HOH A 60 960 67 HOH HOH . O 5 HOH A 61 961 68 HOH HOH . O 5 HOH A 62 962 69 HOH HOH . O 5 HOH A 63 963 70 HOH HOH . O 5 HOH A 64 964 71 HOH HOH . O 5 HOH A 65 965 72 HOH HOH . O 5 HOH A 66 966 73 HOH HOH . O 5 HOH A 67 967 74 HOH HOH . O 5 HOH A 68 968 75 HOH HOH . O 5 HOH A 69 969 77 HOH HOH . O 5 HOH A 70 970 78 HOH HOH . O 5 HOH A 71 971 79 HOH HOH . O 5 HOH A 72 972 80 HOH HOH . O 5 HOH A 73 973 82 HOH HOH . O 5 HOH A 74 974 83 HOH HOH . O 5 HOH A 75 975 84 HOH HOH . O 5 HOH A 76 976 85 HOH HOH . O 5 HOH A 77 977 86 HOH HOH . O 5 HOH A 78 978 87 HOH HOH . O 5 HOH A 79 979 88 HOH HOH . O 5 HOH A 80 980 91 HOH HOH . O 5 HOH A 81 981 92 HOH HOH . O 5 HOH A 82 982 93 HOH HOH . O 5 HOH A 83 983 94 HOH HOH . O 5 HOH A 84 984 96 HOH HOH . O 5 HOH A 85 985 97 HOH HOH . O 5 HOH A 86 986 98 HOH HOH . O 5 HOH A 87 987 99 HOH HOH . O 5 HOH A 88 988 100 HOH HOH . O 5 HOH A 89 989 102 HOH HOH . O 5 HOH A 90 990 103 HOH HOH . O 5 HOH A 91 991 104 HOH HOH . O 5 HOH A 92 992 106 HOH HOH . O 5 HOH A 93 993 107 HOH HOH . O 5 HOH A 94 994 108 HOH HOH . O 5 HOH A 95 995 109 HOH HOH . O 5 HOH A 96 996 111 HOH HOH . O 5 HOH A 97 997 112 HOH HOH . O 5 HOH A 98 998 113 HOH HOH . O 5 HOH A 99 999 114 HOH HOH . O 5 HOH A 100 1000 115 HOH HOH . O 5 HOH A 101 1001 116 HOH HOH . O 5 HOH A 102 1002 117 HOH HOH . O 5 HOH A 103 1003 118 HOH HOH . O 5 HOH A 104 1004 119 HOH HOH . O 5 HOH A 105 1005 121 HOH HOH . O 5 HOH A 106 1006 122 HOH HOH . O 5 HOH A 107 1007 126 HOH HOH . O 5 HOH A 108 1008 127 HOH HOH . O 5 HOH A 109 1009 128 HOH HOH . O 5 HOH A 110 1010 129 HOH HOH . O 5 HOH A 111 1011 130 HOH HOH . O 5 HOH A 112 1012 133 HOH HOH . O 5 HOH A 113 1013 134 HOH HOH . O 5 HOH A 114 1014 135 HOH HOH . O 5 HOH A 115 1015 138 HOH HOH . O 5 HOH A 116 1016 140 HOH HOH . O 5 HOH A 117 1017 141 HOH HOH . O 5 HOH A 118 1018 142 HOH HOH . O 5 HOH A 119 1019 143 HOH HOH . O 5 HOH A 120 1020 144 HOH HOH . O 5 HOH A 121 1021 145 HOH HOH . O 5 HOH A 122 1022 146 HOH HOH . O 5 HOH A 123 1023 147 HOH HOH . O 5 HOH A 124 1024 148 HOH HOH . O 5 HOH A 125 1025 149 HOH HOH . O 5 HOH A 126 1026 150 HOH HOH . O 5 HOH A 127 1027 151 HOH HOH . O 5 HOH A 128 1028 152 HOH HOH . O 5 HOH A 129 1029 153 HOH HOH . O 5 HOH A 130 1030 156 HOH HOH . O 5 HOH A 131 1031 157 HOH HOH . O 5 HOH A 132 1032 158 HOH HOH . O 5 HOH A 133 1033 159 HOH HOH . O 5 HOH A 134 1034 160 HOH HOH . O 5 HOH A 135 1035 161 HOH HOH . O 5 HOH A 136 1036 164 HOH HOH . O 5 HOH A 137 1037 165 HOH HOH . O 5 HOH A 138 1038 169 HOH HOH . O 5 HOH A 139 1039 171 HOH HOH . O 5 HOH A 140 1040 172 HOH HOH . O 5 HOH A 141 1041 176 HOH HOH . O 5 HOH A 142 1042 177 HOH HOH . O 5 HOH A 143 1043 179 HOH HOH . O 5 HOH A 144 1044 180 HOH HOH . O 5 HOH A 145 1045 181 HOH HOH . O 5 HOH A 146 1046 184 HOH HOH . O 5 HOH A 147 1047 192 HOH HOH . O 5 HOH A 148 1048 193 HOH HOH . O 5 HOH A 149 1049 194 HOH HOH . O 5 HOH A 150 1050 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -8.521 73.231 39.732 1 79.84 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . B 2 -7.982 71.838 39.315 1 88.45 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . B 2 -8.977 70.98 38.511 1 84.96 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . B 2 -10.417 71.077 39.021 1 81.42 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . B 2 -10.76 72.543 39.173 1 72.91 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . B 2 -12.216 72.714 39.566 1 70.31 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . B 2 -5.53 71.626 39.241 1 89.96 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . B 2 -4.263 71.636 38.429 1 78.31 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . B 2 -6.699 71.849 38.604 1 90.21 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . B 2 -8.57 69.64 38.629 1 81.4 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . B 2 -11.341 70.435 38.163 1 78.16 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . B 2 -9.886 73.083 40.152 1 78.07 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . B 2 -12.425 72.194 40.851 1 70.97 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . B 2 -5.449 71.427 40.457 1 84.26 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #