data_3WSX # _model_server_result.job_id xRxNqoEAlVU1zQyHEwlPwA _model_server_result.datetime_utc '2025-03-06 09:33:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":812}' # _entry.id 3WSX # _exptl.entry_id 3WSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WSX _cell.length_a 126.371 _cell.length_b 126.371 _cell.length_c 290.282 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 597 A CYS 625 1_555 A SG CYS 632 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf2 A SG CYS 615 A CYS 643 1_555 A SG CYS 647 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf3 A SG CYS 649 A CYS 677 1_555 A SG CYS 708 A CYS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf4 A SG CYS 656 A CYS 684 1_555 A SG CYS 671 A CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A ND2 ASN 130 A ASN 158 1_555 B C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 588 A ASN 616 1_555 C C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 646 A ASN 674 1_555 D C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3WSX _atom_sites.fract_transf_matrix[1][1] 0.007913 _atom_sites.fract_transf_matrix[1][2] 0.004569 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 800 NAG NAG . C 2 NAG A 1 802 801 NAG NAG . D 2 NAG A 1 803 802 NAG NAG . E 3 PO4 A 1 804 900 PO4 PO4 . F 3 PO4 A 1 805 901 PO4 PO4 . G 3 PO4 A 1 806 902 PO4 PO4 . H 3 PO4 A 1 807 903 PO4 PO4 . I 4 EDO A 1 808 910 EDO EDO . J 4 EDO A 1 809 911 EDO EDO . K 4 EDO A 1 810 912 EDO EDO . L 4 EDO A 1 811 913 EDO EDO . M 4 EDO A 1 812 914 EDO EDO . N 4 EDO A 1 813 915 EDO EDO . O 5 HOH A 1 901 1 HOH HOH . O 5 HOH A 2 902 2 HOH HOH . O 5 HOH A 3 903 3 HOH HOH . O 5 HOH A 4 904 5 HOH HOH . O 5 HOH A 5 905 6 HOH HOH . O 5 HOH A 6 906 7 HOH HOH . O 5 HOH A 7 907 8 HOH HOH . O 5 HOH A 8 908 9 HOH HOH . O 5 HOH A 9 909 10 HOH HOH . O 5 HOH A 10 910 11 HOH HOH . O 5 HOH A 11 911 12 HOH HOH . O 5 HOH A 12 912 13 HOH HOH . O 5 HOH A 13 913 15 HOH HOH . O 5 HOH A 14 914 16 HOH HOH . O 5 HOH A 15 915 17 HOH HOH . O 5 HOH A 16 916 18 HOH HOH . O 5 HOH A 17 917 19 HOH HOH . O 5 HOH A 18 918 20 HOH HOH . O 5 HOH A 19 919 21 HOH HOH . O 5 HOH A 20 920 22 HOH HOH . O 5 HOH A 21 921 23 HOH HOH . O 5 HOH A 22 922 24 HOH HOH . O 5 HOH A 23 923 25 HOH HOH . O 5 HOH A 24 924 26 HOH HOH . O 5 HOH A 25 925 27 HOH HOH . O 5 HOH A 26 926 28 HOH HOH . O 5 HOH A 27 927 29 HOH HOH . O 5 HOH A 28 928 30 HOH HOH . O 5 HOH A 29 929 31 HOH HOH . O 5 HOH A 30 930 32 HOH HOH . O 5 HOH A 31 931 33 HOH HOH . O 5 HOH A 32 932 34 HOH HOH . O 5 HOH A 33 933 35 HOH HOH . O 5 HOH A 34 934 36 HOH HOH . O 5 HOH A 35 935 37 HOH HOH . O 5 HOH A 36 936 38 HOH HOH . O 5 HOH A 37 937 39 HOH HOH . O 5 HOH A 38 938 40 HOH HOH . O 5 HOH A 39 939 41 HOH HOH . O 5 HOH A 40 940 42 HOH HOH . O 5 HOH A 41 941 44 HOH HOH . O 5 HOH A 42 942 45 HOH HOH . O 5 HOH A 43 943 46 HOH HOH . O 5 HOH A 44 944 47 HOH HOH . O 5 HOH A 45 945 48 HOH HOH . O 5 HOH A 46 946 49 HOH HOH . O 5 HOH A 47 947 50 HOH HOH . O 5 HOH A 48 948 51 HOH HOH . O 5 HOH A 49 949 52 HOH HOH . O 5 HOH A 50 950 55 HOH HOH . O 5 HOH A 51 951 57 HOH HOH . O 5 HOH A 52 952 58 HOH HOH . O 5 HOH A 53 953 59 HOH HOH . O 5 HOH A 54 954 60 HOH HOH . O 5 HOH A 55 955 61 HOH HOH . O 5 HOH A 56 956 62 HOH HOH . O 5 HOH A 57 957 63 HOH HOH . O 5 HOH A 58 958 64 HOH HOH . O 5 HOH A 59 959 66 HOH HOH . O 5 HOH A 60 960 67 HOH HOH . O 5 HOH A 61 961 68 HOH HOH . O 5 HOH A 62 962 69 HOH HOH . O 5 HOH A 63 963 70 HOH HOH . O 5 HOH A 64 964 71 HOH HOH . O 5 HOH A 65 965 72 HOH HOH . O 5 HOH A 66 966 73 HOH HOH . O 5 HOH A 67 967 74 HOH HOH . O 5 HOH A 68 968 75 HOH HOH . O 5 HOH A 69 969 77 HOH HOH . O 5 HOH A 70 970 78 HOH HOH . O 5 HOH A 71 971 79 HOH HOH . O 5 HOH A 72 972 80 HOH HOH . O 5 HOH A 73 973 82 HOH HOH . O 5 HOH A 74 974 83 HOH HOH . O 5 HOH A 75 975 84 HOH HOH . O 5 HOH A 76 976 85 HOH HOH . O 5 HOH A 77 977 86 HOH HOH . O 5 HOH A 78 978 87 HOH HOH . O 5 HOH A 79 979 88 HOH HOH . O 5 HOH A 80 980 91 HOH HOH . O 5 HOH A 81 981 92 HOH HOH . O 5 HOH A 82 982 93 HOH HOH . O 5 HOH A 83 983 94 HOH HOH . O 5 HOH A 84 984 96 HOH HOH . O 5 HOH A 85 985 97 HOH HOH . O 5 HOH A 86 986 98 HOH HOH . O 5 HOH A 87 987 99 HOH HOH . O 5 HOH A 88 988 100 HOH HOH . O 5 HOH A 89 989 102 HOH HOH . O 5 HOH A 90 990 103 HOH HOH . O 5 HOH A 91 991 104 HOH HOH . O 5 HOH A 92 992 106 HOH HOH . O 5 HOH A 93 993 107 HOH HOH . O 5 HOH A 94 994 108 HOH HOH . O 5 HOH A 95 995 109 HOH HOH . O 5 HOH A 96 996 111 HOH HOH . O 5 HOH A 97 997 112 HOH HOH . O 5 HOH A 98 998 113 HOH HOH . O 5 HOH A 99 999 114 HOH HOH . O 5 HOH A 100 1000 115 HOH HOH . O 5 HOH A 101 1001 116 HOH HOH . O 5 HOH A 102 1002 117 HOH HOH . O 5 HOH A 103 1003 118 HOH HOH . O 5 HOH A 104 1004 119 HOH HOH . O 5 HOH A 105 1005 121 HOH HOH . O 5 HOH A 106 1006 122 HOH HOH . O 5 HOH A 107 1007 126 HOH HOH . O 5 HOH A 108 1008 127 HOH HOH . O 5 HOH A 109 1009 128 HOH HOH . O 5 HOH A 110 1010 129 HOH HOH . O 5 HOH A 111 1011 130 HOH HOH . O 5 HOH A 112 1012 133 HOH HOH . O 5 HOH A 113 1013 134 HOH HOH . O 5 HOH A 114 1014 135 HOH HOH . O 5 HOH A 115 1015 138 HOH HOH . O 5 HOH A 116 1016 140 HOH HOH . O 5 HOH A 117 1017 141 HOH HOH . O 5 HOH A 118 1018 142 HOH HOH . O 5 HOH A 119 1019 143 HOH HOH . O 5 HOH A 120 1020 144 HOH HOH . O 5 HOH A 121 1021 145 HOH HOH . O 5 HOH A 122 1022 146 HOH HOH . O 5 HOH A 123 1023 147 HOH HOH . O 5 HOH A 124 1024 148 HOH HOH . O 5 HOH A 125 1025 149 HOH HOH . O 5 HOH A 126 1026 150 HOH HOH . O 5 HOH A 127 1027 151 HOH HOH . O 5 HOH A 128 1028 152 HOH HOH . O 5 HOH A 129 1029 153 HOH HOH . O 5 HOH A 130 1030 156 HOH HOH . O 5 HOH A 131 1031 157 HOH HOH . O 5 HOH A 132 1032 158 HOH HOH . O 5 HOH A 133 1033 159 HOH HOH . O 5 HOH A 134 1034 160 HOH HOH . O 5 HOH A 135 1035 161 HOH HOH . O 5 HOH A 136 1036 164 HOH HOH . O 5 HOH A 137 1037 165 HOH HOH . O 5 HOH A 138 1038 169 HOH HOH . O 5 HOH A 139 1039 171 HOH HOH . O 5 HOH A 140 1040 172 HOH HOH . O 5 HOH A 141 1041 176 HOH HOH . O 5 HOH A 142 1042 177 HOH HOH . O 5 HOH A 143 1043 179 HOH HOH . O 5 HOH A 144 1044 180 HOH HOH . O 5 HOH A 145 1045 181 HOH HOH . O 5 HOH A 146 1046 184 HOH HOH . O 5 HOH A 147 1047 192 HOH HOH . O 5 HOH A 148 1048 193 HOH HOH . O 5 HOH A 149 1049 194 HOH HOH . O 5 HOH A 150 1050 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 4 -40.55 76.52 11.038 1 50.67 ? C1 EDO 812 A 1 HETATM 2 O O1 EDO . . . M 4 -39.878 77.8 10.942 1 49.76 ? O1 EDO 812 A 1 HETATM 3 C C2 EDO . . . M 4 -39.59 75.423 10.533 1 53.53 ? C2 EDO 812 A 1 HETATM 4 O O2 EDO . . . M 4 -39.753 74.1 11.126 1 53.02 ? O2 EDO 812 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #