data_3WT6 # _model_server_result.job_id h_EElUH6WfgKsPuM3oIfvg _model_server_result.datetime_utc '2024-11-29 06:59:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3WT6 # _exptl.entry_id 3WT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.743 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.2 _cell.angle_gamma 90 _cell.entry_id 3WT6 _cell.length_a 127.05 _cell.length_b 44.77 _cell.length_c 45.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H52 O3' _chem_comp.formula_weight 472.743 _chem_comp.id YA1 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C2 YA1 doub 376 n n O1 C1 YA1 sing 377 n n C2 C1 YA1 sing 378 n n C2 C3 YA1 sing 379 n n C1 C6 YA1 sing 380 n n C3 C4 YA1 sing 381 n n C3 O2 YA1 sing 382 n n C6 C5 YA1 sing 383 n n C4 C5 YA1 sing 384 n n C5 C10 YA1 doub 385 n n C34 C33 YA1 sing 386 n n C10 C11 YA1 sing 387 n n C23 C16 YA1 sing 388 n n C11 C12 YA1 doub 389 e n C33 C32 YA1 sing 390 n n C32 C31 YA1 sing 391 n n C12 C13 YA1 sing 392 n n C12 C17 YA1 sing 393 n n C14 C13 YA1 sing 394 n n C14 C15 YA1 sing 395 n n C16 C17 YA1 sing 396 n n C16 C15 YA1 sing 397 n n C16 C20 YA1 sing 398 n n C18 C17 YA1 sing 399 n n C18 C19 YA1 sing 400 n n C22 C21 YA1 sing 401 n n C21 C20 YA1 sing 402 n n C21 C24 YA1 sing 403 n n C19 C20 YA1 sing 404 n n C31 C24 YA1 sing 405 n n C24 C25 YA1 sing 406 n n C25 C26 YA1 sing 407 n n C26 C27 YA1 sing 408 n n C27 C29 YA1 sing 409 n n C27 C28 YA1 sing 410 n n C27 O3 YA1 sing 411 n n O2 H1 YA1 sing 412 n n C3 H2 YA1 sing 413 n n C9 H3 YA1 sing 414 n n C9 H4 YA1 sing 415 n n C1 H5 YA1 sing 416 n n O1 H6 YA1 sing 417 n n C6 H7 YA1 sing 418 n n C6 H8 YA1 sing 419 n n C4 H9 YA1 sing 420 n n C4 H10 YA1 sing 421 n n C10 H11 YA1 sing 422 n n C11 H12 YA1 sing 423 n n C13 H13 YA1 sing 424 n n C13 H14 YA1 sing 425 n n C14 H15 YA1 sing 426 n n C14 H16 YA1 sing 427 n n C15 H17 YA1 sing 428 n n C15 H18 YA1 sing 429 n n C17 H19 YA1 sing 430 n n C23 H20 YA1 sing 431 n n C23 H21 YA1 sing 432 n n C23 H22 YA1 sing 433 n n C18 H23 YA1 sing 434 n n C18 H24 YA1 sing 435 n n C19 H25 YA1 sing 436 n n C19 H26 YA1 sing 437 n n C20 H27 YA1 sing 438 n n C21 H28 YA1 sing 439 n n C22 H29 YA1 sing 440 n n C22 H30 YA1 sing 441 n n C22 H31 YA1 sing 442 n n C24 H32 YA1 sing 443 n n C31 H33 YA1 sing 444 n n C31 H34 YA1 sing 445 n n C32 H35 YA1 sing 446 n n C32 H36 YA1 sing 447 n n C33 H37 YA1 sing 448 n n C33 H38 YA1 sing 449 n n C34 H39 YA1 sing 450 n n C34 H40 YA1 sing 451 n n C34 H41 YA1 sing 452 n n C25 H42 YA1 sing 453 n n C25 H43 YA1 sing 454 n n C26 H44 YA1 sing 455 n n C26 H45 YA1 sing 456 n n C29 H46 YA1 sing 457 n n C29 H47 YA1 sing 458 n n C29 H48 YA1 sing 459 n n C28 H49 YA1 sing 460 n n C28 H50 YA1 sing 461 n n C28 H51 YA1 sing 462 n n O3 H52 YA1 sing 463 n n # _atom_sites.entry_id 3WT6 _atom_sites.fract_transf_matrix[1][1] 0.007871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000578 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YA1 A 1 501 1 YA1 YA1 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 18 HOH HOH . D 4 HOH A 17 617 19 HOH HOH . D 4 HOH A 18 618 20 HOH HOH . D 4 HOH A 19 619 21 HOH HOH . D 4 HOH A 20 620 22 HOH HOH . D 4 HOH A 21 621 23 HOH HOH . D 4 HOH A 22 622 25 HOH HOH . D 4 HOH A 23 623 26 HOH HOH . D 4 HOH A 24 624 27 HOH HOH . D 4 HOH A 25 625 28 HOH HOH . D 4 HOH A 26 626 29 HOH HOH . D 4 HOH A 27 627 30 HOH HOH . D 4 HOH A 28 628 31 HOH HOH . D 4 HOH A 29 629 32 HOH HOH . D 4 HOH A 30 630 33 HOH HOH . D 4 HOH A 31 631 34 HOH HOH . D 4 HOH A 32 632 35 HOH HOH . D 4 HOH A 33 633 36 HOH HOH . D 4 HOH A 34 634 37 HOH HOH . D 4 HOH A 35 635 38 HOH HOH . D 4 HOH A 36 636 39 HOH HOH . D 4 HOH A 37 637 42 HOH HOH . D 4 HOH A 38 638 43 HOH HOH . D 4 HOH A 39 639 44 HOH HOH . D 4 HOH A 40 640 45 HOH HOH . D 4 HOH A 41 641 46 HOH HOH . D 4 HOH A 42 642 47 HOH HOH . D 4 HOH A 43 643 48 HOH HOH . D 4 HOH A 44 644 49 HOH HOH . D 4 HOH A 45 645 50 HOH HOH . D 4 HOH A 46 646 52 HOH HOH . D 4 HOH A 47 647 53 HOH HOH . D 4 HOH A 48 648 54 HOH HOH . D 4 HOH A 49 649 55 HOH HOH . D 4 HOH A 50 650 56 HOH HOH . D 4 HOH A 51 651 57 HOH HOH . D 4 HOH A 52 652 58 HOH HOH . D 4 HOH A 53 653 59 HOH HOH . D 4 HOH A 54 654 60 HOH HOH . D 4 HOH A 55 655 61 HOH HOH . D 4 HOH A 56 656 62 HOH HOH . E 4 HOH C 1 701 40 HOH HOH . E 4 HOH C 2 702 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 YA1 . A . C 3 12.108 8.554 54.678 0.7 29.63 ? O2 YA1 501 A 1 HETATM 2 O O2 YA1 . B . C 3 12.087 8.549 54.797 0.3 30.77 ? O2 YA1 501 A 1 HETATM 3 C C3 YA1 . A . C 3 11.029 8.524 53.739 0.7 29.44 ? C3 YA1 501 A 1 HETATM 4 C C3 YA1 . B . C 3 10.985 8.542 53.885 0.3 30.3 ? C3 YA1 501 A 1 HETATM 5 C C2 YA1 . A . C 3 11.118 7.27 52.95 0.7 28.2 ? C2 YA1 501 A 1 HETATM 6 C C2 YA1 . B . C 3 11.112 7.305 53.077 0.3 29.38 ? C2 YA1 501 A 1 HETATM 7 C C9 YA1 . A . C 3 11.096 7.337 51.633 0.7 28.37 ? C9 YA1 501 A 1 HETATM 8 C C9 YA1 . B . C 3 11.161 7.38 51.759 0.3 29.86 ? C9 YA1 501 A 1 HETATM 9 C C1 YA1 . A . C 3 11.226 6.01 53.748 0.7 26.36 ? C1 YA1 501 A 1 HETATM 10 C C1 YA1 . B . C 3 11.198 6.029 53.857 0.3 28.04 ? C1 YA1 501 A 1 HETATM 11 O O1 YA1 . A . C 3 11.24 4.848 52.912 0.7 25.71 ? O1 YA1 501 A 1 HETATM 12 O O1 YA1 . B . C 3 11.28 4.899 52.979 0.3 27.6 ? O1 YA1 501 A 1 HETATM 13 C C6 YA1 . A . C 3 10.082 5.867 54.775 0.7 25.37 ? C6 YA1 501 A 1 HETATM 14 C C6 YA1 . B . C 3 10.02 5.868 54.83 0.3 27.15 ? C6 YA1 501 A 1 HETATM 15 C C4 YA1 . A . C 3 9.71 8.481 54.52 0.7 29.22 ? C4 YA1 501 A 1 HETATM 16 C C4 YA1 . B . C 3 9.636 8.482 54.612 0.3 29.86 ? C4 YA1 501 A 1 HETATM 17 C C5 YA1 . A . C 3 9.565 7.19 55.333 0.7 27.48 ? C5 YA1 501 A 1 HETATM 18 C C5 YA1 . B . C 3 9.471 7.174 55.373 0.3 28.86 ? C5 YA1 501 A 1 HETATM 19 C C10 YA1 . A . C 3 8.943 7.311 56.532 0.7 29.54 ? C10 YA1 501 A 1 HETATM 20 C C10 YA1 . B . C 3 8.805 7.209 56.546 0.3 30.66 ? C10 YA1 501 A 1 HETATM 21 C C11 YA1 . A . C 3 8.602 6.146 57.354 0.7 28.71 ? C11 YA1 501 A 1 HETATM 22 C C11 YA1 . B . C 3 8.518 5.976 57.288 0.3 30.92 ? C11 YA1 501 A 1 HETATM 23 C C12 YA1 . A . C 3 7.474 5.976 58.102 0.7 31.21 ? C12 YA1 501 A 1 HETATM 24 C C12 YA1 . B . C 3 7.458 5.845 58.122 0.3 32.92 ? C12 YA1 501 A 1 HETATM 25 C C13 YA1 . A . C 3 6.466 7.058 58.482 0.7 31.26 ? C13 YA1 501 A 1 HETATM 26 C C13 YA1 . B . C 3 6.56 6.998 58.508 0.3 33.76 ? C13 YA1 501 A 1 HETATM 27 C C14 YA1 . A . C 3 5.049 6.517 58.25 0.7 31.18 ? C14 YA1 501 A 1 HETATM 28 C C14 YA1 . B . C 3 5.108 6.542 58.255 0.3 33.94 ? C14 YA1 501 A 1 HETATM 29 C C15 YA1 . A . C 3 4.836 5.16 58.959 0.7 32.39 ? C15 YA1 501 A 1 HETATM 30 C C15 YA1 . B . C 3 4.752 5.172 58.878 0.3 34.82 ? C15 YA1 501 A 1 HETATM 31 C C17 YA1 . A . C 3 7.208 4.64 58.793 0.7 30.52 ? C17 YA1 501 A 1 HETATM 32 C C17 YA1 . B . C 3 7.092 4.557 58.833 0.3 33.19 ? C17 YA1 501 A 1 HETATM 33 C C16 YA1 . A . C 3 5.839 4.087 58.502 0.7 30.95 ? C16 YA1 501 A 1 HETATM 34 C C16 YA1 . B . C 3 5.719 4.076 58.443 0.3 33.6 ? C16 YA1 501 A 1 HETATM 35 C C23 YA1 . A . C 3 5.688 3.762 57.017 0.7 31.59 ? C23 YA1 501 A 1 HETATM 36 C C23 YA1 . B . C 3 5.664 3.852 56.942 0.3 33.39 ? C23 YA1 501 A 1 HETATM 37 C C18 YA1 . A . C 3 8.145 3.454 58.662 0.7 30.31 ? C18 YA1 501 A 1 HETATM 38 C C18 YA1 . B . C 3 7.969 3.325 58.734 0.3 32.9 ? C18 YA1 501 A 1 HETATM 39 C C19 YA1 . A . C 3 7.349 2.361 59.351 0.7 32.75 ? C19 YA1 501 A 1 HETATM 40 C C19 YA1 . B . C 3 7.035 2.21 59.235 0.3 34.75 ? C19 YA1 501 A 1 HETATM 41 C C20 YA1 . A . C 3 5.875 2.84 59.363 0.7 35.57 ? C20 YA1 501 A 1 HETATM 42 C C20 YA1 . B . C 3 5.58 2.726 59.141 0.3 36.51 ? C20 YA1 501 A 1 HETATM 43 C C21 YA1 . A . C 3 4.84 1.801 58.876 0.7 40.19 ? C21 YA1 501 A 1 HETATM 44 C C21 YA1 . B . C 3 4.503 1.889 58.399 0.3 38.1 ? C21 YA1 501 A 1 HETATM 45 C C22 YA1 . A . C 3 3.392 2.321 58.731 0.7 40.71 ? C22 YA1 501 A 1 HETATM 46 C C22 YA1 . B . C 3 3.24 2.721 58.326 0.3 39.28 ? C22 YA1 501 A 1 HETATM 47 C C24 YA1 . A . C 3 4.951 0.519 59.685 0.7 43.4 ? C24 YA1 501 A 1 HETATM 48 C C24 YA1 . B . C 3 3.929 0.605 58.995 0.3 41 ? C24 YA1 501 A 1 HETATM 49 C C31 YA1 . A . C 3 3.669 -0.248 59.421 0.7 47.42 ? C31 YA1 501 A 1 HETATM 50 C C31 YA1 . B . C 3 4.979 -0.163 59.801 0.3 42.95 ? C31 YA1 501 A 1 HETATM 51 C C32 YA1 . A . C 3 3.672 -0.74 58.002 0.7 46.33 ? C32 YA1 501 A 1 HETATM 52 C C32 YA1 . B . C 3 4.914 0.266 61.275 0.3 44.08 ? C32 YA1 501 A 1 HETATM 53 C C33 YA1 . A . C 3 4.468 -2.003 58.015 0.7 43.66 ? C33 YA1 501 A 1 HETATM 54 C C33 YA1 . B . C 3 5.079 -0.896 62.251 0.3 43.65 ? C33 YA1 501 A 1 HETATM 55 C C34 YA1 . A . C 3 4.422 -2.675 56.672 0.7 45.67 ? C34 YA1 501 A 1 HETATM 56 C C34 YA1 . B . C 3 4.294 -0.698 63.531 0.3 45.04 ? C34 YA1 501 A 1 HETATM 57 C C25 YA1 . A . C 3 5.276 0.547 61.188 0.7 46.94 ? C25 YA1 501 A 1 HETATM 58 C C25 YA1 . B . C 3 3.205 -0.207 57.879 0.3 42.55 ? C25 YA1 501 A 1 HETATM 59 C C26 YA1 . A . C 3 4.97 -0.803 61.877 0.7 44.3 ? C26 YA1 501 A 1 HETATM 60 C C26 YA1 . B . C 3 1.661 -0.009 57.872 0.3 44.22 ? C26 YA1 501 A 1 HETATM 61 C C27 YA1 . A . C 3 4.622 -0.717 63.365 0.7 45.8 ? C27 YA1 501 A 1 HETATM 62 C C27 YA1 . B . C 3 0.822 -0.031 56.557 0.3 44.19 ? C27 YA1 501 A 1 HETATM 63 C C29 YA1 . A . C 3 5.952 -0.69 64.104 0.7 49.21 ? C29 YA1 501 A 1 HETATM 64 C C29 YA1 . B . C 3 -0.279 1.002 56.691 0.3 46.46 ? C29 YA1 501 A 1 HETATM 65 C C28 YA1 . A . C 3 3.669 0.436 63.667 0.7 48.58 ? C28 YA1 501 A 1 HETATM 66 C C28 YA1 . B . C 3 1.546 0.336 55.296 0.3 42.08 ? C28 YA1 501 A 1 HETATM 67 O O3 YA1 . A . C 3 3.899 -1.885 63.779 0.7 48.09 ? O3 YA1 501 A 1 HETATM 68 O O3 YA1 . B . C 3 0.216 -1.296 56.269 0.3 45.12 ? O3 YA1 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 68 #