data_3WT7 # _model_server_result.job_id zNxsCbQJYYR-6a0ud3qTzQ _model_server_result.datetime_utc '2025-05-20 05:42:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wt7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3WT7 # _exptl.entry_id 3WT7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.769 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-5-ethyl-5-hydroxyheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.56 _cell.angle_gamma 90 _cell.entry_id 3WT7 _cell.length_a 128.21 _cell.length_b 44.31 _cell.length_c 45.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H54 O3' _chem_comp.formula_weight 486.769 _chem_comp.id YA2 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-5-ethyl-5-hydroxyheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C4 YA2 doub 376 n n O33 C5 YA2 sing 377 n n C4 C5 YA2 sing 378 n n C4 C3 YA2 sing 379 n n C5 C6 YA2 sing 380 n n C3 C2 YA2 sing 381 n n C3 O34 YA2 sing 382 n n C6 C1 YA2 sing 383 n n C2 C1 YA2 sing 384 n n C1 C7 YA2 doub 385 n n C28 C27 YA2 sing 386 n n C30 C29 YA2 sing 387 n n C29 C26 YA2 sing 388 n n C7 C8 YA2 sing 389 n n C8 C9 YA2 doub 390 e n C35 C13 YA2 sing 391 n n C27 C26 YA2 sing 392 n n C26 C25 YA2 sing 393 n n C26 O31 YA2 sing 394 n n C25 C20 YA2 sing 395 n n C15 C16 YA2 sing 396 n n C15 C14 YA2 sing 397 n n C9 C14 YA2 sing 398 n n C9 C10 YA2 sing 399 n n C16 C17 YA2 sing 400 n n C18 C17 YA2 sing 401 n n C18 C20 YA2 sing 402 n n C18 C19 YA2 sing 403 n n C13 C14 YA2 sing 404 n n C13 C17 YA2 sing 405 n n C13 C12 YA2 sing 406 n n C10 C11 YA2 sing 407 n n C11 C12 YA2 sing 408 n n C20 C21 YA2 sing 409 n n C21 C22 YA2 sing 410 n n C22 C23 YA2 sing 411 n n C23 C24 YA2 sing 412 n n O31 H1 YA2 sing 413 n n C29 H2 YA2 sing 414 n n C29 H3 YA2 sing 415 n n C30 H4 YA2 sing 416 n n C30 H5 YA2 sing 417 n n C30 H6 YA2 sing 418 n n C27 H7 YA2 sing 419 n n C27 H8 YA2 sing 420 n n C28 H9 YA2 sing 421 n n C28 H10 YA2 sing 422 n n C28 H11 YA2 sing 423 n n C25 H12 YA2 sing 424 n n C25 H13 YA2 sing 425 n n C20 H14 YA2 sing 426 n n C21 H15 YA2 sing 427 n n C21 H16 YA2 sing 428 n n C22 H17 YA2 sing 429 n n C22 H18 YA2 sing 430 n n C23 H19 YA2 sing 431 n n C23 H20 YA2 sing 432 n n C24 H21 YA2 sing 433 n n C24 H22 YA2 sing 434 n n C24 H23 YA2 sing 435 n n C18 H24 YA2 sing 436 n n C19 H25 YA2 sing 437 n n C19 H26 YA2 sing 438 n n C19 H27 YA2 sing 439 n n C17 H28 YA2 sing 440 n n C16 H29 YA2 sing 441 n n C16 H30 YA2 sing 442 n n C15 H31 YA2 sing 443 n n C15 H32 YA2 sing 444 n n C14 H33 YA2 sing 445 n n C35 H34 YA2 sing 446 n n C35 H35 YA2 sing 447 n n C35 H36 YA2 sing 448 n n C12 H37 YA2 sing 449 n n C12 H38 YA2 sing 450 n n C11 H39 YA2 sing 451 n n C11 H40 YA2 sing 452 n n C10 H41 YA2 sing 453 n n C10 H42 YA2 sing 454 n n C8 H43 YA2 sing 455 n n C7 H44 YA2 sing 456 n n C2 H45 YA2 sing 457 n n C2 H46 YA2 sing 458 n n C6 H47 YA2 sing 459 n n C6 H48 YA2 sing 460 n n C5 H49 YA2 sing 461 n n O33 H50 YA2 sing 462 n n C32 H51 YA2 sing 463 n n C32 H52 YA2 sing 464 n n C3 H53 YA2 sing 465 n n O34 H54 YA2 sing 466 n n # _atom_sites.entry_id 3WT7 _atom_sites.fract_transf_matrix[1][1] 0.0078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000485 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YA2 A 1 501 1 YA2 YA2 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 14 HOH HOH . D 4 HOH A 14 614 15 HOH HOH . D 4 HOH A 15 615 16 HOH HOH . D 4 HOH A 16 616 17 HOH HOH . D 4 HOH A 17 617 18 HOH HOH . D 4 HOH A 18 618 19 HOH HOH . D 4 HOH A 19 619 20 HOH HOH . D 4 HOH A 20 620 21 HOH HOH . D 4 HOH A 21 621 22 HOH HOH . D 4 HOH A 22 622 23 HOH HOH . D 4 HOH A 23 623 24 HOH HOH . D 4 HOH A 24 624 25 HOH HOH . D 4 HOH A 25 625 27 HOH HOH . D 4 HOH A 26 626 28 HOH HOH . D 4 HOH A 27 627 29 HOH HOH . D 4 HOH A 28 628 30 HOH HOH . D 4 HOH A 29 629 31 HOH HOH . D 4 HOH A 30 630 33 HOH HOH . D 4 HOH A 31 631 34 HOH HOH . D 4 HOH A 32 632 35 HOH HOH . D 4 HOH A 33 633 37 HOH HOH . D 4 HOH A 34 634 38 HOH HOH . D 4 HOH A 35 635 40 HOH HOH . D 4 HOH A 36 636 43 HOH HOH . D 4 HOH A 37 637 44 HOH HOH . D 4 HOH A 38 638 47 HOH HOH . D 4 HOH A 39 639 48 HOH HOH . D 4 HOH A 40 640 49 HOH HOH . D 4 HOH A 41 641 50 HOH HOH . D 4 HOH A 42 642 51 HOH HOH . D 4 HOH A 43 643 52 HOH HOH . D 4 HOH A 44 644 53 HOH HOH . D 4 HOH A 45 645 54 HOH HOH . D 4 HOH A 46 646 55 HOH HOH . D 4 HOH A 47 647 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O31 YA2 . . . C 3 2.166 -0.61 59.218 1 51.1 ? O31 YA2 501 A 1 HETATM 2 C C26 YA2 . . . C 3 2.642 0.133 58.125 1 46.69 ? C26 YA2 501 A 1 HETATM 3 C C29 YA2 . . . C 3 2.89 -0.9 57.022 1 47.08 ? C29 YA2 501 A 1 HETATM 4 C C30 YA2 . . . C 3 1.627 -1.602 56.591 1 48.63 ? C30 YA2 501 A 1 HETATM 5 C C27 YA2 . . . C 3 1.52 1.149 57.786 1 47.08 ? C27 YA2 501 A 1 HETATM 6 C C28 YA2 . . . C 3 1.851 1.907 56.517 1 45.26 ? C28 YA2 501 A 1 HETATM 7 C C25 YA2 . . . C 3 4 0.788 58.493 1 42.58 ? C25 YA2 501 A 1 HETATM 8 C C20 YA2 . . . C 3 3.835 1.793 59.635 1 41.72 ? C20 YA2 501 A 1 HETATM 9 C C21 YA2 . . . C 3 4.622 1.322 60.881 1 41.42 ? C21 YA2 501 A 1 HETATM 10 C C22 YA2 . . . C 3 4.021 1.957 62.123 1 42.61 ? C22 YA2 501 A 1 HETATM 11 C C23 YA2 . . . C 3 4.794 1.504 63.363 1 42.99 ? C23 YA2 501 A 1 HETATM 12 C C24 YA2 . . . C 3 4.27 2.226 64.584 1 40.36 ? C24 YA2 501 A 1 HETATM 13 C C18 YA2 . . . C 3 4.115 3.231 59.169 1 38.07 ? C18 YA2 501 A 1 HETATM 14 C C19 YA2 . . . C 3 2.98 4.085 59.67 1 38.26 ? C19 YA2 501 A 1 HETATM 15 C C17 YA2 . . . C 3 5.514 3.746 59.551 1 36.48 ? C17 YA2 501 A 1 HETATM 16 C C16 YA2 . . . C 3 6.635 2.921 58.86 1 38 ? C16 YA2 501 A 1 HETATM 17 C C15 YA2 . . . C 3 7.772 3.901 58.509 1 36.98 ? C15 YA2 501 A 1 HETATM 18 C C13 YA2 . . . C 3 5.836 5.2 59.179 1 34.72 ? C13 YA2 501 A 1 HETATM 19 C C14 YA2 . . . C 3 7.351 5.219 59.221 1 34.28 ? C14 YA2 501 A 1 HETATM 20 C C35 YA2 . . . C 3 5.315 5.506 57.741 1 37 ? C35 YA2 501 A 1 HETATM 21 C C12 YA2 . . . C 3 5.385 6.263 60.138 1 33.81 ? C12 YA2 501 A 1 HETATM 22 C C11 YA2 . . . C 3 5.794 7.645 59.629 1 33.24 ? C11 YA2 501 A 1 HETATM 23 C C10 YA2 . . . C 3 7.287 7.765 59.368 1 33.34 ? C10 YA2 501 A 1 HETATM 24 C C9 YA2 . . . C 3 7.845 6.508 58.669 1 32.51 ? C9 YA2 501 A 1 HETATM 25 C C8 YA2 . . . C 3 8.708 6.539 57.64 1 31.43 ? C8 YA2 501 A 1 HETATM 26 C C7 YA2 . . . C 3 9.148 7.808 57.079 1 33.03 ? C7 YA2 501 A 1 HETATM 27 C C1 YA2 . . . C 3 9.789 7.91 55.897 1 33.86 ? C1 YA2 501 A 1 HETATM 28 C C2 YA2 . . . C 3 10.154 9.275 55.35 1 33.34 ? C2 YA2 501 A 1 HETATM 29 C C6 YA2 . . . C 3 10.144 6.652 55.124 1 33.87 ? C6 YA2 501 A 1 HETATM 30 C C5 YA2 . . . C 3 11.528 6.73 54.481 1 34.86 ? C5 YA2 501 A 1 HETATM 31 O O33 YA2 . . . C 3 11.703 5.613 53.532 1 35.44 ? O33 YA2 501 A 1 HETATM 32 C C4 YA2 . . . C 3 11.689 8.062 53.835 1 33.77 ? C4 YA2 501 A 1 HETATM 33 C C32 YA2 . . . C 3 11.993 8.126 52.574 1 34.09 ? C32 YA2 501 A 1 HETATM 34 C C3 YA2 . . . C 3 11.508 9.313 54.648 1 34.06 ? C3 YA2 501 A 1 HETATM 35 O O34 YA2 . . . C 3 12.595 9.429 55.592 1 37.17 ? O34 YA2 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #