data_3WTQ # _model_server_result.job_id 6gEhA_Drfp0sP-c_LNlC3g _model_server_result.datetime_utc '2024-11-26 00:09:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wtq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3WTQ # _exptl.entry_id 3WTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.743 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.18 _cell.angle_gamma 90 _cell.entry_id 3WTQ _cell.length_a 152.286 _cell.length_b 43.851 _cell.length_c 42.321 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H52 O3' _chem_comp.formula_weight 472.743 _chem_comp.id YS9 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C3 YS9 doub 376 n n O31 C4 YS9 sing 377 n n C3 C4 YS9 sing 378 n n C3 C2 YS9 sing 379 n n C4 C5 YS9 sing 380 n n C2 O32 YS9 sing 381 n n C2 C1 YS9 sing 382 n n C5 C6 YS9 sing 383 n n C1 C6 YS9 sing 384 n n C6 C7 YS9 doub 385 n n C7 C8 YS9 sing 386 n n C8 C9 YS9 doub 387 e n C9 C14 YS9 sing 388 n n C9 C10 YS9 sing 389 n n C15 C14 YS9 sing 390 n n C15 C16 YS9 sing 391 n n C34 C13 YS9 sing 392 n n C14 C13 YS9 sing 393 n n C16 C17 YS9 sing 394 n n C10 C11 YS9 sing 395 n n C13 C17 YS9 sing 396 n n C13 C12 YS9 sing 397 n n C28 C27 YS9 sing 398 n n C11 C12 YS9 sing 399 n n C17 C18 YS9 sing 400 n n C26 C27 YS9 sing 401 n n C26 C25 YS9 sing 402 n n C18 C20 YS9 sing 403 n n C18 C19 YS9 sing 404 n n C27 O30 YS9 sing 405 n n C27 C29 YS9 sing 406 n n C20 C25 YS9 sing 407 n n C20 C21 YS9 sing 408 n n C24 C23 YS9 sing 409 n n C23 C22 YS9 sing 410 n n C21 C22 YS9 sing 411 n n O30 H1 YS9 sing 412 n n C29 H2 YS9 sing 413 n n C29 H3 YS9 sing 414 n n C29 H4 YS9 sing 415 n n C28 H5 YS9 sing 416 n n C28 H6 YS9 sing 417 n n C28 H7 YS9 sing 418 n n C26 H8 YS9 sing 419 n n C26 H9 YS9 sing 420 n n C25 H10 YS9 sing 421 n n C25 H11 YS9 sing 422 n n C20 H12 YS9 sing 423 n n C21 H13 YS9 sing 424 n n C21 H14 YS9 sing 425 n n C22 H15 YS9 sing 426 n n C22 H16 YS9 sing 427 n n C23 H17 YS9 sing 428 n n C23 H18 YS9 sing 429 n n C24 H19 YS9 sing 430 n n C24 H20 YS9 sing 431 n n C24 H21 YS9 sing 432 n n C18 H22 YS9 sing 433 n n C19 H23 YS9 sing 434 n n C19 H24 YS9 sing 435 n n C19 H25 YS9 sing 436 n n C17 H26 YS9 sing 437 n n C16 H27 YS9 sing 438 n n C16 H28 YS9 sing 439 n n C15 H29 YS9 sing 440 n n C15 H30 YS9 sing 441 n n C14 H31 YS9 sing 442 n n C34 H32 YS9 sing 443 n n C34 H33 YS9 sing 444 n n C34 H34 YS9 sing 445 n n C12 H35 YS9 sing 446 n n C12 H36 YS9 sing 447 n n C11 H37 YS9 sing 448 n n C11 H38 YS9 sing 449 n n C10 H39 YS9 sing 450 n n C10 H40 YS9 sing 451 n n C8 H41 YS9 sing 452 n n C7 H42 YS9 sing 453 n n C1 H43 YS9 sing 454 n n C1 H44 YS9 sing 455 n n C2 H45 YS9 sing 456 n n O32 H46 YS9 sing 457 n n C5 H47 YS9 sing 458 n n C5 H48 YS9 sing 459 n n C4 H49 YS9 sing 460 n n O31 H50 YS9 sing 461 n n C33 H51 YS9 sing 462 n n C33 H52 YS9 sing 463 n n # _atom_sites.entry_id 3WTQ _atom_sites.fract_transf_matrix[1][1] 0.006567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YS9 A 1 501 1 YS9 YS9 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 12 HOH HOH . D 4 HOH A 12 612 13 HOH HOH . D 4 HOH A 13 613 14 HOH HOH . D 4 HOH A 14 614 15 HOH HOH . D 4 HOH A 15 615 16 HOH HOH . D 4 HOH A 16 616 17 HOH HOH . D 4 HOH A 17 617 18 HOH HOH . D 4 HOH A 18 618 19 HOH HOH . D 4 HOH A 19 619 20 HOH HOH . D 4 HOH A 20 620 21 HOH HOH . D 4 HOH A 21 621 22 HOH HOH . D 4 HOH A 22 622 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O30 YS9 . . . C 3 9.271 -3.779 28.452 1 97.04 ? O30 YS9 501 A 1 HETATM 2 C C27 YS9 . . . C 3 8.819 -2.61 27.673 1 94.66 ? C27 YS9 501 A 1 HETATM 3 C C29 YS9 . . . C 3 7.826 -1.811 28.548 1 97.71 ? C29 YS9 501 A 1 HETATM 4 C C28 YS9 . . . C 3 8.137 -3.113 26.433 1 95.74 ? C28 YS9 501 A 1 HETATM 5 C C26 YS9 . . . C 3 10.014 -1.725 27.254 1 88.63 ? C26 YS9 501 A 1 HETATM 6 C C25 YS9 . . . C 3 10.892 -1.353 28.442 1 88.34 ? C25 YS9 501 A 1 HETATM 7 C C20 YS9 . . . C 3 12.139 -0.481 28.1 1 88.19 ? C20 YS9 501 A 1 HETATM 8 C C21 YS9 . . . C 3 12.855 -0.184 29.414 1 90.29 ? C21 YS9 501 A 1 HETATM 9 C C22 YS9 . . . C 3 13.842 -1.282 29.726 1 94.59 ? C22 YS9 501 A 1 HETATM 10 C C23 YS9 . . . C 3 15.034 -1.227 28.773 1 99.49 ? C23 YS9 501 A 1 HETATM 11 C C24 YS9 . . . C 3 15.673 -2.585 28.545 1 104.03 ? C24 YS9 501 A 1 HETATM 12 C C18 YS9 . . . C 3 11.811 0.793 27.316 1 83.4 ? C18 YS9 501 A 1 HETATM 13 C C19 YS9 . . . C 3 10.738 1.573 28.12 1 85.22 ? C19 YS9 501 A 1 HETATM 14 C C17 YS9 . . . C 3 13.079 1.583 26.945 1 85.41 ? C17 YS9 501 A 1 HETATM 15 C C16 YS9 . . . C 3 14.015 0.885 25.933 1 84.85 ? C16 YS9 501 A 1 HETATM 16 C C15 YS9 . . . C 3 14.633 1.998 25.044 1 88.2 ? C15 YS9 501 A 1 HETATM 17 C C13 YS9 . . . C 3 12.852 2.988 26.354 1 82.18 ? C13 YS9 501 A 1 HETATM 18 C C14 YS9 . . . C 3 14.216 3.284 25.765 1 85.63 ? C14 YS9 501 A 1 HETATM 19 C C34 YS9 . . . C 3 11.708 2.968 25.349 1 82.48 ? C34 YS9 501 A 1 HETATM 20 C C12 YS9 . . . C 3 12.581 4.095 27.348 1 85.03 ? C12 YS9 501 A 1 HETATM 21 C C11 YS9 . . . C 3 12.561 5.478 26.665 1 84.05 ? C11 YS9 501 A 1 HETATM 22 C C10 YS9 . . . C 3 13.867 5.781 25.968 1 85.94 ? C10 YS9 501 A 1 HETATM 23 C C9 YS9 . . . C 3 14.206 4.609 25.042 1 85.68 ? C9 YS9 501 A 1 HETATM 24 C C8 YS9 . . . C 3 14.472 4.706 23.73 1 85.47 ? C8 YS9 501 A 1 HETATM 25 C C7 YS9 . . . C 3 14.362 5.941 22.946 1 85.99 ? C7 YS9 501 A 1 HETATM 26 C C6 YS9 . . . C 3 14.274 5.968 21.601 1 87.8 ? C6 YS9 501 A 1 HETATM 27 C C1 YS9 . . . C 3 14.107 7.298 20.912 1 89.08 ? C1 YS9 501 A 1 HETATM 28 C C2 YS9 . . . C 3 14.835 7.368 19.568 1 90 ? C2 YS9 501 A 1 HETATM 29 O O32 YS9 . . . C 3 16.243 7.353 19.681 1 92.51 ? O32 YS9 501 A 1 HETATM 30 C C5 YS9 . . . C 3 14.39 4.7 20.761 1 87.26 ? C5 YS9 501 A 1 HETATM 31 C C4 YS9 . . . C 3 14.737 4.794 19.278 1 88.33 ? C4 YS9 501 A 1 HETATM 32 O O31 YS9 . . . C 3 13.899 3.885 18.477 1 94.6 ? O31 YS9 501 A 1 HETATM 33 C C3 YS9 . . . C 3 14.427 6.187 18.789 1 88.96 ? C3 YS9 501 A 1 HETATM 34 C C33 YS9 . . . C 3 13.749 6.351 17.707 1 87.45 ? C33 YS9 501 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #