data_3WTQ
#
_model_server_result.job_id            -N1ezCB9X0MBa8iulinHfA 
_model_server_result.datetime_utc      '2024-11-13 06:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wtq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3WTQ 
#
_exptl.entry_id    3WTQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              472.743 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.18 
_cell.angle_gamma         90 
_cell.entry_id            3WTQ 
_cell.length_a            152.286 
_cell.length_b            43.851 
_cell.length_c            42.321 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WTQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H52 O3' 
_chem_comp.formula_weight    472.743 
_chem_comp.id                YS9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C33 C3 YS9 doub 376 n n 
O31 C4 YS9 sing 377 n n 
C3 C4 YS9 sing 378 n n 
C3 C2 YS9 sing 379 n n 
C4 C5 YS9 sing 380 n n 
C2 O32 YS9 sing 381 n n 
C2 C1 YS9 sing 382 n n 
C5 C6 YS9 sing 383 n n 
C1 C6 YS9 sing 384 n n 
C6 C7 YS9 doub 385 n n 
C7 C8 YS9 sing 386 n n 
C8 C9 YS9 doub 387 e n 
C9 C14 YS9 sing 388 n n 
C9 C10 YS9 sing 389 n n 
C15 C14 YS9 sing 390 n n 
C15 C16 YS9 sing 391 n n 
C34 C13 YS9 sing 392 n n 
C14 C13 YS9 sing 393 n n 
C16 C17 YS9 sing 394 n n 
C10 C11 YS9 sing 395 n n 
C13 C17 YS9 sing 396 n n 
C13 C12 YS9 sing 397 n n 
C28 C27 YS9 sing 398 n n 
C11 C12 YS9 sing 399 n n 
C17 C18 YS9 sing 400 n n 
C26 C27 YS9 sing 401 n n 
C26 C25 YS9 sing 402 n n 
C18 C20 YS9 sing 403 n n 
C18 C19 YS9 sing 404 n n 
C27 O30 YS9 sing 405 n n 
C27 C29 YS9 sing 406 n n 
C20 C25 YS9 sing 407 n n 
C20 C21 YS9 sing 408 n n 
C24 C23 YS9 sing 409 n n 
C23 C22 YS9 sing 410 n n 
C21 C22 YS9 sing 411 n n 
O30 H1 YS9 sing 412 n n 
C29 H2 YS9 sing 413 n n 
C29 H3 YS9 sing 414 n n 
C29 H4 YS9 sing 415 n n 
C28 H5 YS9 sing 416 n n 
C28 H6 YS9 sing 417 n n 
C28 H7 YS9 sing 418 n n 
C26 H8 YS9 sing 419 n n 
C26 H9 YS9 sing 420 n n 
C25 H10 YS9 sing 421 n n 
C25 H11 YS9 sing 422 n n 
C20 H12 YS9 sing 423 n n 
C21 H13 YS9 sing 424 n n 
C21 H14 YS9 sing 425 n n 
C22 H15 YS9 sing 426 n n 
C22 H16 YS9 sing 427 n n 
C23 H17 YS9 sing 428 n n 
C23 H18 YS9 sing 429 n n 
C24 H19 YS9 sing 430 n n 
C24 H20 YS9 sing 431 n n 
C24 H21 YS9 sing 432 n n 
C18 H22 YS9 sing 433 n n 
C19 H23 YS9 sing 434 n n 
C19 H24 YS9 sing 435 n n 
C19 H25 YS9 sing 436 n n 
C17 H26 YS9 sing 437 n n 
C16 H27 YS9 sing 438 n n 
C16 H28 YS9 sing 439 n n 
C15 H29 YS9 sing 440 n n 
C15 H30 YS9 sing 441 n n 
C14 H31 YS9 sing 442 n n 
C34 H32 YS9 sing 443 n n 
C34 H33 YS9 sing 444 n n 
C34 H34 YS9 sing 445 n n 
C12 H35 YS9 sing 446 n n 
C12 H36 YS9 sing 447 n n 
C11 H37 YS9 sing 448 n n 
C11 H38 YS9 sing 449 n n 
C10 H39 YS9 sing 450 n n 
C10 H40 YS9 sing 451 n n 
C8 H41 YS9 sing 452 n n 
C7 H42 YS9 sing 453 n n 
C1 H43 YS9 sing 454 n n 
C1 H44 YS9 sing 455 n n 
C2 H45 YS9 sing 456 n n 
O32 H46 YS9 sing 457 n n 
C5 H47 YS9 sing 458 n n 
C5 H48 YS9 sing 459 n n 
C4 H49 YS9 sing 460 n n 
O31 H50 YS9 sing 461 n n 
C33 H51 YS9 sing 462 n n 
C33 H52 YS9 sing 463 n n 
#
_atom_sites.entry_id                     3WTQ 
_atom_sites.fract_transf_matrix[1][1]    0.006567 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00071 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 YS9 A 1 501 1 YS9 YS9 . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 10 HOH HOH . 
D 4 HOH A 11 611 12 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 14 HOH HOH . 
D 4 HOH A 14 614 15 HOH HOH . 
D 4 HOH A 15 615 16 HOH HOH . 
D 4 HOH A 16 616 17 HOH HOH . 
D 4 HOH A 17 617 18 HOH HOH . 
D 4 HOH A 18 618 19 HOH HOH . 
D 4 HOH A 19 619 20 HOH HOH . 
D 4 HOH A 20 620 21 HOH HOH . 
D 4 HOH A 21 621 22 HOH HOH . 
D 4 HOH A 22 622 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O30 YS9 . . . C 3 9.271 -3.779 28.452 1 97.04 ? O30 YS9 501 A 1 
HETATM 2 C C27 YS9 . . . C 3 8.819 -2.61 27.673 1 94.66 ? C27 YS9 501 A 1 
HETATM 3 C C29 YS9 . . . C 3 7.826 -1.811 28.548 1 97.71 ? C29 YS9 501 A 1 
HETATM 4 C C28 YS9 . . . C 3 8.137 -3.113 26.433 1 95.74 ? C28 YS9 501 A 1 
HETATM 5 C C26 YS9 . . . C 3 10.014 -1.725 27.254 1 88.63 ? C26 YS9 501 A 1 
HETATM 6 C C25 YS9 . . . C 3 10.892 -1.353 28.442 1 88.34 ? C25 YS9 501 A 1 
HETATM 7 C C20 YS9 . . . C 3 12.139 -0.481 28.1 1 88.19 ? C20 YS9 501 A 1 
HETATM 8 C C21 YS9 . . . C 3 12.855 -0.184 29.414 1 90.29 ? C21 YS9 501 A 1 
HETATM 9 C C22 YS9 . . . C 3 13.842 -1.282 29.726 1 94.59 ? C22 YS9 501 A 1 
HETATM 10 C C23 YS9 . . . C 3 15.034 -1.227 28.773 1 99.49 ? C23 YS9 501 A 1 
HETATM 11 C C24 YS9 . . . C 3 15.673 -2.585 28.545 1 104.03 ? C24 YS9 501 A 1 
HETATM 12 C C18 YS9 . . . C 3 11.811 0.793 27.316 1 83.4 ? C18 YS9 501 A 1 
HETATM 13 C C19 YS9 . . . C 3 10.738 1.573 28.12 1 85.22 ? C19 YS9 501 A 1 
HETATM 14 C C17 YS9 . . . C 3 13.079 1.583 26.945 1 85.41 ? C17 YS9 501 A 1 
HETATM 15 C C16 YS9 . . . C 3 14.015 0.885 25.933 1 84.85 ? C16 YS9 501 A 1 
HETATM 16 C C15 YS9 . . . C 3 14.633 1.998 25.044 1 88.2 ? C15 YS9 501 A 1 
HETATM 17 C C13 YS9 . . . C 3 12.852 2.988 26.354 1 82.18 ? C13 YS9 501 A 1 
HETATM 18 C C14 YS9 . . . C 3 14.216 3.284 25.765 1 85.63 ? C14 YS9 501 A 1 
HETATM 19 C C34 YS9 . . . C 3 11.708 2.968 25.349 1 82.48 ? C34 YS9 501 A 1 
HETATM 20 C C12 YS9 . . . C 3 12.581 4.095 27.348 1 85.03 ? C12 YS9 501 A 1 
HETATM 21 C C11 YS9 . . . C 3 12.561 5.478 26.665 1 84.05 ? C11 YS9 501 A 1 
HETATM 22 C C10 YS9 . . . C 3 13.867 5.781 25.968 1 85.94 ? C10 YS9 501 A 1 
HETATM 23 C C9 YS9 . . . C 3 14.206 4.609 25.042 1 85.68 ? C9 YS9 501 A 1 
HETATM 24 C C8 YS9 . . . C 3 14.472 4.706 23.73 1 85.47 ? C8 YS9 501 A 1 
HETATM 25 C C7 YS9 . . . C 3 14.362 5.941 22.946 1 85.99 ? C7 YS9 501 A 1 
HETATM 26 C C6 YS9 . . . C 3 14.274 5.968 21.601 1 87.8 ? C6 YS9 501 A 1 
HETATM 27 C C1 YS9 . . . C 3 14.107 7.298 20.912 1 89.08 ? C1 YS9 501 A 1 
HETATM 28 C C2 YS9 . . . C 3 14.835 7.368 19.568 1 90 ? C2 YS9 501 A 1 
HETATM 29 O O32 YS9 . . . C 3 16.243 7.353 19.681 1 92.51 ? O32 YS9 501 A 1 
HETATM 30 C C5 YS9 . . . C 3 14.39 4.7 20.761 1 87.26 ? C5 YS9 501 A 1 
HETATM 31 C C4 YS9 . . . C 3 14.737 4.794 19.278 1 88.33 ? C4 YS9 501 A 1 
HETATM 32 O O31 YS9 . . . C 3 13.899 3.885 18.477 1 94.6 ? O31 YS9 501 A 1 
HETATM 33 C C3 YS9 . . . C 3 14.427 6.187 18.789 1 88.96 ? C3 YS9 501 A 1 
HETATM 34 C C33 YS9 . . . C 3 13.749 6.351 17.707 1 87.45 ? C33 YS9 501 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           34 
#