data_3WU9 # _model_server_result.job_id 9uTRBJzp5361AVGpUmW8hA _model_server_result.datetime_utc '2024-10-19 01:41:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3WU9 # _exptl.entry_id 3WU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (IV) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WU9 _cell.length_a 79.269 _cell.length_b 79.269 _cell.length_c 37.823 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 18.9115 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NH1 ARG 14 A ARG 14 1_555 F PT PT4 . A PT4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc2 A OD1 ASN 65 A ASN 65 1_555 E PT PT4 . A PT4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc3 E PT PT4 . A PT4 304 1_555 G O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 F PT PT4 . A PT4 305 1_555 G O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'Pt 4' _chem_comp.formula_weight 195.078 _chem_comp.id PT4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (IV) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WU9 _atom_sites.fract_transf_matrix[1][1] 0.012615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PT4 A 1 301 301 PT4 PT . C 2 PT4 A 1 302 302 PT4 PT . D 2 PT4 A 1 303 303 PT4 PT . E 2 PT4 A 1 304 304 PT4 PT . F 2 PT4 A 1 305 305 PT4 PT . G 3 HOH A 1 401 130 HOH HOH . G 3 HOH A 2 402 131 HOH HOH . G 3 HOH A 3 403 132 HOH HOH . G 3 HOH A 4 404 133 HOH HOH . G 3 HOH A 5 405 134 HOH HOH . G 3 HOH A 6 406 135 HOH HOH . G 3 HOH A 7 407 136 HOH HOH . G 3 HOH A 8 408 137 HOH HOH . G 3 HOH A 9 409 138 HOH HOH . G 3 HOH A 10 410 139 HOH HOH . G 3 HOH A 11 411 140 HOH HOH . G 3 HOH A 12 412 142 HOH HOH . G 3 HOH A 13 413 143 HOH HOH . G 3 HOH A 14 414 144 HOH HOH . G 3 HOH A 15 415 145 HOH HOH . G 3 HOH A 16 416 146 HOH HOH . G 3 HOH A 17 417 147 HOH HOH . G 3 HOH A 18 418 148 HOH HOH . G 3 HOH A 19 419 149 HOH HOH . G 3 HOH A 20 420 150 HOH HOH . G 3 HOH A 21 421 151 HOH HOH . G 3 HOH A 22 422 152 HOH HOH . G 3 HOH A 23 423 154 HOH HOH . G 3 HOH A 24 424 155 HOH HOH . G 3 HOH A 25 425 156 HOH HOH . G 3 HOH A 26 426 157 HOH HOH . G 3 HOH A 27 427 158 HOH HOH . G 3 HOH A 28 428 159 HOH HOH . G 3 HOH A 29 429 160 HOH HOH . G 3 HOH A 30 430 161 HOH HOH . G 3 HOH A 31 431 162 HOH HOH . G 3 HOH A 32 432 163 HOH HOH . G 3 HOH A 33 433 166 HOH HOH . G 3 HOH A 34 434 167 HOH HOH . G 3 HOH A 35 435 168 HOH HOH . G 3 HOH A 36 436 170 HOH HOH . G 3 HOH A 37 437 171 HOH HOH . G 3 HOH A 38 438 172 HOH HOH . G 3 HOH A 39 439 173 HOH HOH . G 3 HOH A 40 440 175 HOH HOH . G 3 HOH A 41 441 176 HOH HOH . G 3 HOH A 42 442 178 HOH HOH . G 3 HOH A 43 443 181 HOH HOH . G 3 HOH A 44 444 183 HOH HOH . G 3 HOH A 45 445 187 HOH HOH . G 3 HOH A 46 446 190 HOH HOH . G 3 HOH A 47 447 191 HOH HOH . G 3 HOH A 48 448 192 HOH HOH . G 3 HOH A 49 449 195 HOH HOH . G 3 HOH A 50 450 197 HOH HOH . G 3 HOH A 51 451 200 HOH HOH . G 3 HOH A 52 452 201 HOH HOH . G 3 HOH A 53 453 205 HOH HOH . G 3 HOH A 54 454 208 HOH HOH . G 3 HOH A 55 455 209 HOH HOH . G 3 HOH A 56 456 210 HOH HOH . G 3 HOH A 57 457 218 HOH HOH . G 3 HOH A 58 458 220 HOH HOH . G 3 HOH A 59 459 223 HOH HOH . G 3 HOH A 60 460 233 HOH HOH . G 3 HOH A 61 461 239 HOH HOH . G 3 HOH A 62 462 250 HOH HOH . G 3 HOH A 63 463 251 HOH HOH . G 3 HOH A 64 464 252 HOH HOH . G 3 HOH A 65 465 261 HOH HOH . G 3 HOH A 66 466 277 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT4 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.797 _atom_site.Cartn_y 10.797 _atom_site.Cartn_z 9.456 _atom_site.occupancy 0.08 _atom_site.B_iso_or_equiv 38.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT4 _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #