data_3WUH # _model_server_result.job_id 3Rm2onnw6dbZyGIrZCQqDw _model_server_result.datetime_utc '2024-12-18 10:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wuh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3WUH # _exptl.entry_id 3WUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WUH _cell.length_a 180.315 _cell.length_b 180.315 _cell.length_c 180.315 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,C,D,G 3 1 B,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 21_546 z+1/4,y-1/4,-x+7/4 0 0 1 0 1 0 -1 0 0 45.07875 -45.07875 315.55125 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 121 A HIS 145 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A NE2 HIS 125 A HIS 149 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 A NE2 HIS 151 A HIS 175 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A OD1 ASP 337 A ASP 361 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc5 B NE2 HIS 121 B HIS 145 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc6 B NE2 HIS 125 B HIS 149 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 B NE2 HIS 151 B HIS 175 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc8 B OD1 ASP 337 B ASP 361 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 E ZN ZN . B ZN 501 1_555 H O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3WUH _atom_sites.fract_transf_matrix[1][1] 0.005546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 1 ZN ZN . D 3 AMP A 1 502 2 AMP AMP . E 2 ZN B 1 501 2 ZN ZN . F 3 AMP B 1 502 1 AMP AMP . G 4 HOH A 1 601 2 HOH HOH . H 4 HOH B 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 3 195.035 48.335 154.893 1 129.75 ? P AMP 502 A 1 HETATM 2 O O1P AMP . . . D 3 196.196 47.453 155.284 1 141.69 ? O1P AMP 502 A 1 HETATM 3 O O2P AMP . . . D 3 194.332 48.988 156.059 1 130.07 ? O2P AMP 502 A 1 HETATM 4 O O3P AMP . . . D 3 194.115 47.733 153.858 1 124.27 ? O3P AMP 502 A 1 HETATM 5 O O5' AMP . . . D 3 195.717 49.558 154.134 1 118.37 ? O5' AMP 502 A 1 HETATM 6 C C5' AMP . . . D 3 196.458 49.354 152.935 1 118.83 ? C5' AMP 502 A 1 HETATM 7 C C4' AMP . . . D 3 195.93 50.202 151.804 1 108.25 ? C4' AMP 502 A 1 HETATM 8 O O4' AMP . . . D 3 195.992 51.603 152.186 1 113.93 ? O4' AMP 502 A 1 HETATM 9 C C3' AMP . . . D 3 196.701 50.081 150.489 1 114.98 ? C3' AMP 502 A 1 HETATM 10 O O3' AMP . . . D 3 195.789 50.167 149.395 1 116 ? O3' AMP 502 A 1 HETATM 11 C C2' AMP . . . D 3 197.596 51.317 150.504 1 122.99 ? C2' AMP 502 A 1 HETATM 12 O O2' AMP . . . D 3 198.003 51.763 149.228 1 127 ? O2' AMP 502 A 1 HETATM 13 C C1' AMP . . . D 3 196.699 52.333 151.203 1 118.42 ? C1' AMP 502 A 1 HETATM 14 N N9 AMP . . . D 3 197.424 53.42 151.866 1 109.04 ? N9 AMP 502 A 1 HETATM 15 C C8 AMP . . . D 3 198.286 53.284 152.891 1 113.33 ? C8 AMP 502 A 1 HETATM 16 N N7 AMP . . . D 3 198.789 54.486 153.272 1 115.45 ? N7 AMP 502 A 1 HETATM 17 C C5 AMP . . . D 3 198.243 55.425 152.476 1 115.47 ? C5 AMP 502 A 1 HETATM 18 C C6 AMP . . . D 3 198.34 56.899 152.339 1 119.86 ? C6 AMP 502 A 1 HETATM 19 N N6 AMP . . . D 3 199.144 57.629 153.15 1 120.3 ? N6 AMP 502 A 1 HETATM 20 N N1 AMP . . . D 3 197.599 57.489 151.375 1 114.27 ? N1 AMP 502 A 1 HETATM 21 C C2 AMP . . . D 3 196.796 56.776 150.562 1 111.7 ? C2 AMP 502 A 1 HETATM 22 N N3 AMP . . . D 3 196.661 55.439 150.631 1 116.98 ? N3 AMP 502 A 1 HETATM 23 C C4 AMP . . . D 3 197.346 54.716 151.549 1 111.1 ? C4 AMP 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 23 #