data_3WV8 # _model_server_result.job_id TYQMgD9jQkOMZI8gXhnzBA _model_server_result.datetime_utc '2024-11-05 00:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3WV8 # _exptl.entry_id 3WV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WV8 _cell.length_a 84.92 _cell.length_b 84.92 _cell.length_c 120.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3WV8 _atom_sites.fract_transf_matrix[1][1] 0.011776 _atom_sites.fract_transf_matrix[1][2] 0.006799 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 301 1 ATP ATP . D 3 SO4 A 1 302 1 SO4 SO4 . E 2 ATP B 1 301 2 ATP ATP . F 3 SO4 B 1 302 2 SO4 SO4 . G 4 HOH A 1 401 5 HOH HOH . G 4 HOH A 2 402 8 HOH HOH . G 4 HOH A 3 403 10 HOH HOH . G 4 HOH A 4 404 11 HOH HOH . G 4 HOH A 5 405 12 HOH HOH . G 4 HOH A 6 406 14 HOH HOH . G 4 HOH A 7 407 15 HOH HOH . G 4 HOH A 8 408 16 HOH HOH . G 4 HOH A 9 409 18 HOH HOH . G 4 HOH A 10 410 21 HOH HOH . G 4 HOH A 11 411 22 HOH HOH . G 4 HOH A 12 412 24 HOH HOH . G 4 HOH A 13 413 26 HOH HOH . G 4 HOH A 14 414 29 HOH HOH . G 4 HOH A 15 415 30 HOH HOH . G 4 HOH A 16 416 35 HOH HOH . G 4 HOH A 17 417 37 HOH HOH . G 4 HOH A 18 418 41 HOH HOH . G 4 HOH A 19 419 45 HOH HOH . G 4 HOH A 20 420 46 HOH HOH . G 4 HOH A 21 421 47 HOH HOH . G 4 HOH A 22 422 48 HOH HOH . G 4 HOH A 23 423 49 HOH HOH . G 4 HOH A 24 424 50 HOH HOH . G 4 HOH A 25 425 51 HOH HOH . G 4 HOH A 26 426 55 HOH HOH . G 4 HOH A 27 427 57 HOH HOH . G 4 HOH A 28 428 59 HOH HOH . G 4 HOH A 29 429 60 HOH HOH . G 4 HOH A 30 430 61 HOH HOH . G 4 HOH A 31 431 62 HOH HOH . G 4 HOH A 32 432 65 HOH HOH . G 4 HOH A 33 433 67 HOH HOH . G 4 HOH A 34 434 72 HOH HOH . G 4 HOH A 35 435 74 HOH HOH . G 4 HOH A 36 436 75 HOH HOH . G 4 HOH A 37 437 76 HOH HOH . G 4 HOH A 38 438 79 HOH HOH . G 4 HOH A 39 439 80 HOH HOH . G 4 HOH A 40 440 82 HOH HOH . G 4 HOH A 41 441 87 HOH HOH . G 4 HOH A 42 442 88 HOH HOH . G 4 HOH A 43 443 89 HOH HOH . G 4 HOH A 44 444 90 HOH HOH . G 4 HOH A 45 445 91 HOH HOH . G 4 HOH A 46 446 92 HOH HOH . G 4 HOH A 47 447 94 HOH HOH . G 4 HOH A 48 448 95 HOH HOH . G 4 HOH A 49 449 97 HOH HOH . G 4 HOH A 50 450 103 HOH HOH . G 4 HOH A 51 451 104 HOH HOH . G 4 HOH A 52 452 108 HOH HOH . G 4 HOH A 53 453 110 HOH HOH . G 4 HOH A 54 454 111 HOH HOH . G 4 HOH A 55 455 113 HOH HOH . G 4 HOH A 56 456 114 HOH HOH . G 4 HOH A 57 457 115 HOH HOH . G 4 HOH A 58 458 116 HOH HOH . G 4 HOH A 59 459 117 HOH HOH . G 4 HOH A 60 460 118 HOH HOH . G 4 HOH A 61 461 119 HOH HOH . G 4 HOH A 62 462 120 HOH HOH . G 4 HOH A 63 463 124 HOH HOH . G 4 HOH A 64 464 126 HOH HOH . G 4 HOH A 65 465 127 HOH HOH . G 4 HOH A 66 466 128 HOH HOH . G 4 HOH A 67 467 129 HOH HOH . G 4 HOH A 68 468 130 HOH HOH . G 4 HOH A 69 469 131 HOH HOH . G 4 HOH A 70 470 132 HOH HOH . G 4 HOH A 71 471 133 HOH HOH . G 4 HOH A 72 472 135 HOH HOH . G 4 HOH A 73 473 136 HOH HOH . G 4 HOH A 74 474 138 HOH HOH . G 4 HOH A 75 475 139 HOH HOH . G 4 HOH A 76 476 141 HOH HOH . G 4 HOH A 77 477 145 HOH HOH . G 4 HOH A 78 478 147 HOH HOH . G 4 HOH A 79 479 148 HOH HOH . G 4 HOH A 80 480 150 HOH HOH . G 4 HOH A 81 481 152 HOH HOH . G 4 HOH A 82 482 153 HOH HOH . G 4 HOH A 83 483 155 HOH HOH . G 4 HOH A 84 484 156 HOH HOH . G 4 HOH A 85 485 159 HOH HOH . G 4 HOH A 86 486 164 HOH HOH . G 4 HOH A 87 487 167 HOH HOH . G 4 HOH A 88 488 169 HOH HOH . G 4 HOH A 89 489 170 HOH HOH . G 4 HOH A 90 490 173 HOH HOH . G 4 HOH A 91 491 174 HOH HOH . G 4 HOH A 92 492 176 HOH HOH . G 4 HOH A 93 493 178 HOH HOH . G 4 HOH A 94 494 179 HOH HOH . G 4 HOH A 95 495 180 HOH HOH . G 4 HOH A 96 496 182 HOH HOH . G 4 HOH A 97 497 183 HOH HOH . G 4 HOH A 98 498 184 HOH HOH . G 4 HOH A 99 499 186 HOH HOH . G 4 HOH A 100 500 187 HOH HOH . G 4 HOH A 101 501 189 HOH HOH . G 4 HOH A 102 502 191 HOH HOH . G 4 HOH A 103 503 192 HOH HOH . G 4 HOH A 104 504 193 HOH HOH . G 4 HOH A 105 505 194 HOH HOH . G 4 HOH A 106 506 201 HOH HOH . G 4 HOH A 107 507 204 HOH HOH . G 4 HOH A 108 508 205 HOH HOH . G 4 HOH A 109 509 206 HOH HOH . G 4 HOH A 110 510 209 HOH HOH . G 4 HOH A 111 511 210 HOH HOH . G 4 HOH A 112 512 212 HOH HOH . G 4 HOH A 113 513 213 HOH HOH . G 4 HOH A 114 514 214 HOH HOH . G 4 HOH A 115 515 217 HOH HOH . G 4 HOH A 116 516 219 HOH HOH . G 4 HOH A 117 517 220 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 3 HOH HOH . H 4 HOH B 4 404 4 HOH HOH . H 4 HOH B 5 405 6 HOH HOH . H 4 HOH B 6 406 7 HOH HOH . H 4 HOH B 7 407 9 HOH HOH . H 4 HOH B 8 408 13 HOH HOH . H 4 HOH B 9 409 17 HOH HOH . H 4 HOH B 10 410 19 HOH HOH . H 4 HOH B 11 411 20 HOH HOH . H 4 HOH B 12 412 23 HOH HOH . H 4 HOH B 13 413 25 HOH HOH . H 4 HOH B 14 414 27 HOH HOH . H 4 HOH B 15 415 28 HOH HOH . H 4 HOH B 16 416 31 HOH HOH . H 4 HOH B 17 417 32 HOH HOH . H 4 HOH B 18 418 33 HOH HOH . H 4 HOH B 19 419 34 HOH HOH . H 4 HOH B 20 420 36 HOH HOH . H 4 HOH B 21 421 38 HOH HOH . H 4 HOH B 22 422 39 HOH HOH . H 4 HOH B 23 423 40 HOH HOH . H 4 HOH B 24 424 42 HOH HOH . H 4 HOH B 25 425 43 HOH HOH . H 4 HOH B 26 426 44 HOH HOH . H 4 HOH B 27 427 52 HOH HOH . H 4 HOH B 28 428 53 HOH HOH . H 4 HOH B 29 429 54 HOH HOH . H 4 HOH B 30 430 56 HOH HOH . H 4 HOH B 31 431 58 HOH HOH . H 4 HOH B 32 432 63 HOH HOH . H 4 HOH B 33 433 64 HOH HOH . H 4 HOH B 34 434 66 HOH HOH . H 4 HOH B 35 435 68 HOH HOH . H 4 HOH B 36 436 69 HOH HOH . H 4 HOH B 37 437 70 HOH HOH . H 4 HOH B 38 438 71 HOH HOH . H 4 HOH B 39 439 73 HOH HOH . H 4 HOH B 40 440 77 HOH HOH . H 4 HOH B 41 441 78 HOH HOH . H 4 HOH B 42 442 81 HOH HOH . H 4 HOH B 43 443 83 HOH HOH . H 4 HOH B 44 444 84 HOH HOH . H 4 HOH B 45 445 85 HOH HOH . H 4 HOH B 46 446 86 HOH HOH . H 4 HOH B 47 447 93 HOH HOH . H 4 HOH B 48 448 96 HOH HOH . H 4 HOH B 49 449 98 HOH HOH . H 4 HOH B 50 450 99 HOH HOH . H 4 HOH B 51 451 100 HOH HOH . H 4 HOH B 52 452 101 HOH HOH . H 4 HOH B 53 453 102 HOH HOH . H 4 HOH B 54 454 105 HOH HOH . H 4 HOH B 55 455 106 HOH HOH . H 4 HOH B 56 456 107 HOH HOH . H 4 HOH B 57 457 109 HOH HOH . H 4 HOH B 58 458 112 HOH HOH . H 4 HOH B 59 459 121 HOH HOH . H 4 HOH B 60 460 122 HOH HOH . H 4 HOH B 61 461 123 HOH HOH . H 4 HOH B 62 462 125 HOH HOH . H 4 HOH B 63 463 134 HOH HOH . H 4 HOH B 64 464 137 HOH HOH . H 4 HOH B 65 465 140 HOH HOH . H 4 HOH B 66 466 142 HOH HOH . H 4 HOH B 67 467 143 HOH HOH . H 4 HOH B 68 468 144 HOH HOH . H 4 HOH B 69 469 146 HOH HOH . H 4 HOH B 70 470 149 HOH HOH . H 4 HOH B 71 471 151 HOH HOH . H 4 HOH B 72 472 154 HOH HOH . H 4 HOH B 73 473 157 HOH HOH . H 4 HOH B 74 474 158 HOH HOH . H 4 HOH B 75 475 160 HOH HOH . H 4 HOH B 76 476 161 HOH HOH . H 4 HOH B 77 477 162 HOH HOH . H 4 HOH B 78 478 163 HOH HOH . H 4 HOH B 79 479 165 HOH HOH . H 4 HOH B 80 480 166 HOH HOH . H 4 HOH B 81 481 168 HOH HOH . H 4 HOH B 82 482 171 HOH HOH . H 4 HOH B 83 483 172 HOH HOH . H 4 HOH B 84 484 175 HOH HOH . H 4 HOH B 85 485 177 HOH HOH . H 4 HOH B 86 486 181 HOH HOH . H 4 HOH B 87 487 185 HOH HOH . H 4 HOH B 88 488 188 HOH HOH . H 4 HOH B 89 489 190 HOH HOH . H 4 HOH B 90 490 195 HOH HOH . H 4 HOH B 91 491 196 HOH HOH . H 4 HOH B 92 492 197 HOH HOH . H 4 HOH B 93 493 198 HOH HOH . H 4 HOH B 94 494 199 HOH HOH . H 4 HOH B 95 495 200 HOH HOH . H 4 HOH B 96 496 202 HOH HOH . H 4 HOH B 97 497 203 HOH HOH . H 4 HOH B 98 498 207 HOH HOH . H 4 HOH B 99 499 208 HOH HOH . H 4 HOH B 100 500 211 HOH HOH . H 4 HOH B 101 501 215 HOH HOH . H 4 HOH B 102 502 216 HOH HOH . H 4 HOH B 103 503 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 16.587 -44.93 26.195 1 36.53 ? PG ATP 301 B 1 HETATM 2 O O1G ATP . . . E 2 15.928 -46.186 25.765 1 31.62 ? O1G ATP 301 B 1 HETATM 3 O O2G ATP . . . E 2 18.091 -44.755 25.801 1 36.23 ? O2G ATP 301 B 1 HETATM 4 O O3G ATP . . . E 2 16.387 -44.605 27.666 1 40.69 ? O3G ATP 301 B 1 HETATM 5 P PB ATP . . . E 2 16.192 -42.201 25.296 1 27.56 ? PB ATP 301 B 1 HETATM 6 O O1B ATP . . . E 2 15.104 -41.322 24.782 1 22.22 ? O1B ATP 301 B 1 HETATM 7 O O2B ATP . . . E 2 16.875 -41.68 26.601 1 27.67 ? O2B ATP 301 B 1 HETATM 8 O O3B ATP . . . E 2 15.669 -43.716 25.434 1 28.61 ? O3B ATP 301 B 1 HETATM 9 P PA ATP . . . E 2 17.362 -42.187 22.667 1 21.72 ? PA ATP 301 B 1 HETATM 10 O O1A ATP . . . E 2 16.266 -43.041 21.963 1 20.63 ? O1A ATP 301 B 1 HETATM 11 O O2A ATP . . . E 2 18.81 -42.53 22.292 1 23.97 ? O2A ATP 301 B 1 HETATM 12 O O3A ATP . . . E 2 17.455 -42.336 24.234 1 19.33 ? O3A ATP 301 B 1 HETATM 13 O O5' ATP . . . E 2 17.011 -40.658 22.301 1 22.24 ? O5' ATP 301 B 1 HETATM 14 C C5' ATP . . . E 2 17.741 -39.58 22.895 1 21.67 ? C5' ATP 301 B 1 HETATM 15 C C4' ATP . . . E 2 17.583 -38.452 21.904 1 18.01 ? C4' ATP 301 B 1 HETATM 16 O O4' ATP . . . E 2 18.339 -37.335 22.486 1 18.27 ? O4' ATP 301 B 1 HETATM 17 C C3' ATP . . . E 2 18.145 -38.782 20.47 1 20.68 ? C3' ATP 301 B 1 HETATM 18 O O3' ATP . . . E 2 17.099 -38.774 19.49 1 20.19 ? O3' ATP 301 B 1 HETATM 19 C C2' ATP . . . E 2 19.179 -37.761 20.324 1 24.16 ? C2' ATP 301 B 1 HETATM 20 O O2' ATP . . . E 2 19.236 -37.21 19.04 1 23.35 ? O2' ATP 301 B 1 HETATM 21 C C1' ATP . . . E 2 18.741 -36.684 21.313 1 21.44 ? C1' ATP 301 B 1 HETATM 22 N N9 ATP . . . E 2 19.781 -35.689 21.655 1 24.04 ? N9 ATP 301 B 1 HETATM 23 C C8 ATP . . . E 2 21.045 -35.917 22.075 1 26.45 ? C8 ATP 301 B 1 HETATM 24 N N7 ATP . . . E 2 21.729 -34.801 22.241 1 28.78 ? N7 ATP 301 B 1 HETATM 25 C C5 ATP . . . E 2 20.904 -33.812 21.903 1 24.1 ? C5 ATP 301 B 1 HETATM 26 C C6 ATP . . . E 2 21.052 -32.38 21.82 1 26.88 ? C6 ATP 301 B 1 HETATM 27 N N6 ATP . . . E 2 22.257 -31.769 22.195 1 23.91 ? N6 ATP 301 B 1 HETATM 28 N N1 ATP . . . E 2 19.923 -31.702 21.428 1 29.67 ? N1 ATP 301 B 1 HETATM 29 C C2 ATP . . . E 2 18.79 -32.334 21.001 1 22.71 ? C2 ATP 301 B 1 HETATM 30 N N3 ATP . . . E 2 18.588 -33.606 21.082 1 23.26 ? N3 ATP 301 B 1 HETATM 31 C C4 ATP . . . E 2 19.613 -34.406 21.482 1 24.59 ? C4 ATP 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #