data_3WVN # _model_server_result.job_id swSW0JfBCPSXBPotYEZnyg _model_server_result.datetime_utc '2024-11-07 07:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 3WVN # _exptl.entry_id 3WVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WVN _cell.length_a 80.53 _cell.length_b 109.3 _cell.length_c 200.07 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 3WVN _atom_sites.fract_transf_matrix[1][1] 0.012418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ASP A 1 601 601 ASP ASP . D 2 ASP B 1 601 601 ASP ASP . E 3 HOH A 1 701 701 HOH HOH . E 3 HOH A 2 702 702 HOH HOH . E 3 HOH A 3 703 703 HOH HOH . E 3 HOH A 4 704 704 HOH HOH . E 3 HOH A 5 705 705 HOH HOH . E 3 HOH A 6 706 706 HOH HOH . E 3 HOH A 7 707 707 HOH HOH . E 3 HOH A 8 708 708 HOH HOH . E 3 HOH A 9 709 709 HOH HOH . E 3 HOH A 10 710 710 HOH HOH . E 3 HOH A 11 711 711 HOH HOH . E 3 HOH A 12 712 712 HOH HOH . E 3 HOH A 13 713 713 HOH HOH . E 3 HOH A 14 714 714 HOH HOH . E 3 HOH A 15 715 715 HOH HOH . E 3 HOH A 16 716 716 HOH HOH . E 3 HOH A 17 717 717 HOH HOH . E 3 HOH A 18 718 718 HOH HOH . E 3 HOH A 19 719 719 HOH HOH . E 3 HOH A 20 720 720 HOH HOH . E 3 HOH A 21 721 721 HOH HOH . E 3 HOH A 22 722 722 HOH HOH . E 3 HOH A 23 723 723 HOH HOH . E 3 HOH A 24 724 724 HOH HOH . E 3 HOH A 25 725 725 HOH HOH . E 3 HOH A 26 726 726 HOH HOH . E 3 HOH A 27 727 727 HOH HOH . E 3 HOH A 28 728 728 HOH HOH . E 3 HOH A 29 729 729 HOH HOH . E 3 HOH A 30 730 730 HOH HOH . E 3 HOH A 31 731 731 HOH HOH . E 3 HOH A 32 732 732 HOH HOH . E 3 HOH A 33 733 733 HOH HOH . E 3 HOH A 34 734 734 HOH HOH . E 3 HOH A 35 735 735 HOH HOH . E 3 HOH A 36 736 736 HOH HOH . E 3 HOH A 37 737 737 HOH HOH . E 3 HOH A 38 738 738 HOH HOH . E 3 HOH A 39 739 739 HOH HOH . E 3 HOH A 40 740 740 HOH HOH . E 3 HOH A 41 741 741 HOH HOH . E 3 HOH A 42 742 742 HOH HOH . E 3 HOH A 43 743 743 HOH HOH . E 3 HOH A 44 744 744 HOH HOH . E 3 HOH A 45 745 745 HOH HOH . E 3 HOH A 46 746 746 HOH HOH . E 3 HOH A 47 747 747 HOH HOH . E 3 HOH A 48 748 748 HOH HOH . E 3 HOH A 49 749 749 HOH HOH . E 3 HOH A 50 750 750 HOH HOH . E 3 HOH A 51 751 751 HOH HOH . E 3 HOH A 52 752 752 HOH HOH . E 3 HOH A 53 753 753 HOH HOH . E 3 HOH A 54 754 754 HOH HOH . E 3 HOH A 55 755 755 HOH HOH . E 3 HOH A 56 756 756 HOH HOH . E 3 HOH A 57 757 757 HOH HOH . E 3 HOH A 58 758 758 HOH HOH . E 3 HOH A 59 759 759 HOH HOH . E 3 HOH A 60 760 760 HOH HOH . E 3 HOH A 61 761 761 HOH HOH . E 3 HOH A 62 762 762 HOH HOH . E 3 HOH A 63 763 763 HOH HOH . E 3 HOH A 64 764 764 HOH HOH . E 3 HOH A 65 765 765 HOH HOH . E 3 HOH A 66 766 766 HOH HOH . E 3 HOH A 67 767 767 HOH HOH . E 3 HOH A 68 768 768 HOH HOH . E 3 HOH A 69 769 769 HOH HOH . E 3 HOH A 70 770 770 HOH HOH . E 3 HOH A 71 771 771 HOH HOH . E 3 HOH A 72 772 772 HOH HOH . E 3 HOH A 73 773 773 HOH HOH . E 3 HOH A 74 774 774 HOH HOH . E 3 HOH A 75 775 775 HOH HOH . E 3 HOH A 76 776 776 HOH HOH . E 3 HOH A 77 777 777 HOH HOH . E 3 HOH A 78 778 778 HOH HOH . E 3 HOH A 79 779 779 HOH HOH . E 3 HOH A 80 780 780 HOH HOH . E 3 HOH A 81 781 781 HOH HOH . F 3 HOH B 1 701 701 HOH HOH . F 3 HOH B 2 702 702 HOH HOH . F 3 HOH B 3 703 703 HOH HOH . F 3 HOH B 4 704 704 HOH HOH . F 3 HOH B 5 705 705 HOH HOH . F 3 HOH B 6 706 706 HOH HOH . F 3 HOH B 7 707 707 HOH HOH . F 3 HOH B 8 708 708 HOH HOH . F 3 HOH B 9 709 709 HOH HOH . F 3 HOH B 10 710 710 HOH HOH . F 3 HOH B 11 711 711 HOH HOH . F 3 HOH B 12 712 712 HOH HOH . F 3 HOH B 13 713 713 HOH HOH . F 3 HOH B 14 714 714 HOH HOH . F 3 HOH B 15 715 715 HOH HOH . F 3 HOH B 16 716 716 HOH HOH . F 3 HOH B 17 717 717 HOH HOH . F 3 HOH B 18 718 718 HOH HOH . F 3 HOH B 19 719 719 HOH HOH . F 3 HOH B 20 720 720 HOH HOH . F 3 HOH B 21 721 721 HOH HOH . F 3 HOH B 22 722 722 HOH HOH . F 3 HOH B 23 723 723 HOH HOH . F 3 HOH B 24 724 724 HOH HOH . F 3 HOH B 25 725 725 HOH HOH . F 3 HOH B 26 726 726 HOH HOH . F 3 HOH B 27 727 727 HOH HOH . F 3 HOH B 28 728 728 HOH HOH . F 3 HOH B 29 729 729 HOH HOH . F 3 HOH B 30 730 730 HOH HOH . F 3 HOH B 31 731 731 HOH HOH . F 3 HOH B 32 732 732 HOH HOH . F 3 HOH B 33 733 733 HOH HOH . F 3 HOH B 34 734 734 HOH HOH . F 3 HOH B 35 735 735 HOH HOH . F 3 HOH B 36 736 736 HOH HOH . F 3 HOH B 37 737 737 HOH HOH . F 3 HOH B 38 738 738 HOH HOH . F 3 HOH B 39 739 739 HOH HOH . F 3 HOH B 40 740 740 HOH HOH . F 3 HOH B 41 741 741 HOH HOH . F 3 HOH B 42 742 742 HOH HOH . F 3 HOH B 43 743 743 HOH HOH . F 3 HOH B 44 744 744 HOH HOH . F 3 HOH B 45 745 745 HOH HOH . F 3 HOH B 46 746 746 HOH HOH . F 3 HOH B 47 747 747 HOH HOH . F 3 HOH B 48 748 748 HOH HOH . F 3 HOH B 49 749 749 HOH HOH . F 3 HOH B 50 750 750 HOH HOH . F 3 HOH B 51 751 751 HOH HOH . F 3 HOH B 52 752 752 HOH HOH . F 3 HOH B 53 753 753 HOH HOH . F 3 HOH B 54 754 754 HOH HOH . F 3 HOH B 55 755 755 HOH HOH . F 3 HOH B 56 756 756 HOH HOH . F 3 HOH B 57 757 757 HOH HOH . F 3 HOH B 58 758 758 HOH HOH . F 3 HOH B 59 759 759 HOH HOH . F 3 HOH B 60 760 760 HOH HOH . F 3 HOH B 61 761 761 HOH HOH . F 3 HOH B 62 762 762 HOH HOH . F 3 HOH B 63 763 763 HOH HOH . F 3 HOH B 64 764 764 HOH HOH . F 3 HOH B 65 765 765 HOH HOH . F 3 HOH B 66 766 766 HOH HOH . F 3 HOH B 67 767 767 HOH HOH . F 3 HOH B 68 768 768 HOH HOH . F 3 HOH B 69 769 769 HOH HOH . F 3 HOH B 70 770 770 HOH HOH . F 3 HOH B 71 771 771 HOH HOH . F 3 HOH B 72 772 772 HOH HOH . F 3 HOH B 73 773 773 HOH HOH . F 3 HOH B 74 774 774 HOH HOH . F 3 HOH B 75 775 775 HOH HOH . F 3 HOH B 76 776 776 HOH HOH . F 3 HOH B 77 777 777 HOH HOH . F 3 HOH B 78 778 778 HOH HOH . F 3 HOH B 79 779 779 HOH HOH . F 3 HOH B 80 780 780 HOH HOH . F 3 HOH B 81 781 781 HOH HOH . F 3 HOH B 82 782 782 HOH HOH . F 3 HOH B 83 783 783 HOH HOH . F 3 HOH B 84 784 784 HOH HOH . F 3 HOH B 85 785 785 HOH HOH . F 3 HOH B 86 786 786 HOH HOH . F 3 HOH B 87 787 787 HOH HOH . F 3 HOH B 88 788 788 HOH HOH . F 3 HOH B 89 789 789 HOH HOH . F 3 HOH B 90 790 790 HOH HOH . F 3 HOH B 91 791 791 HOH HOH . F 3 HOH B 92 792 792 HOH HOH . F 3 HOH B 93 793 793 HOH HOH . F 3 HOH B 94 794 794 HOH HOH . F 3 HOH B 95 795 795 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . D 2 33.688 58.447 74.35 1 41.38 ? N ASP 601 B 1 HETATM 2 C CA ASP . . . D 2 34.26 58.116 75.649 1 46.3 ? CA ASP 601 B 1 HETATM 3 C C ASP . . . D 2 33.272 57.274 76.458 1 44.28 ? C ASP 601 B 1 HETATM 4 O O ASP . . . D 2 32.064 57.259 76.19 1 40.35 ? O ASP 601 B 1 HETATM 5 C CB ASP . . . D 2 34.61 59.366 76.492 1 48.74 ? CB ASP 601 B 1 HETATM 6 C CG ASP . . . D 2 35.438 60.418 75.733 1 51.44 ? CG ASP 601 B 1 HETATM 7 O OD1 ASP . . . D 2 36.255 60.105 74.807 1 48.54 ? OD1 ASP 601 B 1 HETATM 8 O OD2 ASP . . . D 2 35.242 61.602 76.114 1 56.82 ? OD2 ASP 601 B 1 HETATM 9 O OXT ASP . . . D 2 33.7 56.603 77.401 1 42.86 ? OXT ASP 601 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #