data_3WW1 # _model_server_result.job_id h33kZ0CutaSAqMjJilngkQ _model_server_result.datetime_utc '2025-02-19 20:32:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ww1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 3WW1 # _exptl.entry_id 3WW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-L-ribopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WW1 _cell.length_a 76.73 _cell.length_b 88.55 _cell.length_c 152.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 113 A HIS 106 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A NE2 HIS 115 A HIS 108 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A OE1 GLU 120 A GLU 113 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc4 A NE2 HIS 195 A HIS 188 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 B NE2 HIS 113 B HIS 106 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 B NE2 HIS 115 B HIS 108 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 B OE2 GLU 120 B GLU 113 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 B NE2 HIS 195 B HIS 188 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc9 F MN MN . B MN 401 1_555 G O2 ROR . B ROR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc10 F MN MN . B MN 401 1_555 G O1 ROR . B ROR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id 0MK _chem_comp.mon_nstd_flag . _chem_comp.name beta-L-ribopyranose _chem_comp.type 'l-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-L-ribose;L-ribose;ribose;L-ribopyranose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 0MK sing 1 n n C4 C5 0MK sing 2 n n C4 C3 0MK sing 3 n n C5 O5 0MK sing 4 n n C3 O3 0MK sing 5 n n C3 C2 0MK sing 6 n n O5 C1 0MK sing 7 n n C2 C1 0MK sing 8 n n C2 O2 0MK sing 9 n n C1 O1 0MK sing 10 n n C1 H1 0MK sing 11 n n C2 H2 0MK sing 12 n n C3 H3 0MK sing 13 n n C4 H4 0MK sing 14 n n C5 H51 0MK sing 15 n n C5 H52 0MK sing 16 n n O1 HO1 0MK sing 17 n n O2 HO2 0MK sing 18 n n O3 HO3 0MK sing 19 n n O4 HO4 0MK sing 20 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version 0MK LRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 0MK b-L-ribopyranose 'COMMON NAME' GMML 1 0MK b-L-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 0MK Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3WW1 _atom_sites.fract_transf_matrix[1][1] 0.013033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 401 401 MN MN . D 3 0MK A 1 402 501 0MK 0MK . E 3 0MK A 1 403 502 0MK 0MK . F 2 MN B 1 401 401 MN MN . G 4 ROR B 1 402 501 ROR ROL . H 3 0MK B 1 403 502 0MK 0MK . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 2 HOH HOH . I 5 HOH A 3 503 4 HOH HOH . I 5 HOH A 4 504 5 HOH HOH . I 5 HOH A 5 505 7 HOH HOH . I 5 HOH A 6 506 8 HOH HOH . I 5 HOH A 7 507 9 HOH HOH . I 5 HOH A 8 508 13 HOH HOH . I 5 HOH A 9 509 15 HOH HOH . I 5 HOH A 10 510 18 HOH HOH . I 5 HOH A 11 511 19 HOH HOH . I 5 HOH A 12 512 21 HOH HOH . I 5 HOH A 13 513 22 HOH HOH . I 5 HOH A 14 514 25 HOH HOH . I 5 HOH A 15 515 26 HOH HOH . I 5 HOH A 16 516 27 HOH HOH . I 5 HOH A 17 517 32 HOH HOH . I 5 HOH A 18 518 33 HOH HOH . I 5 HOH A 19 519 34 HOH HOH . I 5 HOH A 20 520 35 HOH HOH . I 5 HOH A 21 521 36 HOH HOH . I 5 HOH A 22 522 39 HOH HOH . I 5 HOH A 23 523 43 HOH HOH . I 5 HOH A 24 524 44 HOH HOH . I 5 HOH A 25 525 45 HOH HOH . I 5 HOH A 26 526 46 HOH HOH . I 5 HOH A 27 527 49 HOH HOH . I 5 HOH A 28 528 52 HOH HOH . I 5 HOH A 29 529 53 HOH HOH . I 5 HOH A 30 530 54 HOH HOH . I 5 HOH A 31 531 56 HOH HOH . I 5 HOH A 32 532 58 HOH HOH . I 5 HOH A 33 533 60 HOH HOH . I 5 HOH A 34 534 62 HOH HOH . I 5 HOH A 35 535 67 HOH HOH . I 5 HOH A 36 536 69 HOH HOH . I 5 HOH A 37 537 70 HOH HOH . I 5 HOH A 38 538 71 HOH HOH . I 5 HOH A 39 539 72 HOH HOH . I 5 HOH A 40 540 74 HOH HOH . I 5 HOH A 41 541 76 HOH HOH . I 5 HOH A 42 542 77 HOH HOH . I 5 HOH A 43 543 78 HOH HOH . I 5 HOH A 44 544 79 HOH HOH . I 5 HOH A 45 545 81 HOH HOH . I 5 HOH A 46 546 82 HOH HOH . I 5 HOH A 47 547 84 HOH HOH . I 5 HOH A 48 548 86 HOH HOH . I 5 HOH A 49 549 87 HOH HOH . I 5 HOH A 50 550 90 HOH HOH . I 5 HOH A 51 551 91 HOH HOH . I 5 HOH A 52 552 93 HOH HOH . I 5 HOH A 53 553 97 HOH HOH . I 5 HOH A 54 554 99 HOH HOH . I 5 HOH A 55 555 100 HOH HOH . I 5 HOH A 56 556 102 HOH HOH . I 5 HOH A 57 557 103 HOH HOH . I 5 HOH A 58 558 104 HOH HOH . I 5 HOH A 59 559 105 HOH HOH . I 5 HOH A 60 560 106 HOH HOH . I 5 HOH A 61 561 108 HOH HOH . I 5 HOH A 62 562 110 HOH HOH . I 5 HOH A 63 563 111 HOH HOH . I 5 HOH A 64 564 112 HOH HOH . I 5 HOH A 65 565 114 HOH HOH . I 5 HOH A 66 566 116 HOH HOH . I 5 HOH A 67 567 117 HOH HOH . I 5 HOH A 68 568 119 HOH HOH . I 5 HOH A 69 569 120 HOH HOH . I 5 HOH A 70 570 123 HOH HOH . I 5 HOH A 71 571 124 HOH HOH . I 5 HOH A 72 572 125 HOH HOH . I 5 HOH A 73 573 126 HOH HOH . I 5 HOH A 74 574 130 HOH HOH . I 5 HOH A 75 575 132 HOH HOH . I 5 HOH A 76 576 133 HOH HOH . I 5 HOH A 77 577 134 HOH HOH . I 5 HOH A 78 578 138 HOH HOH . I 5 HOH A 79 579 142 HOH HOH . I 5 HOH A 80 580 145 HOH HOH . I 5 HOH A 81 581 146 HOH HOH . I 5 HOH A 82 582 147 HOH HOH . I 5 HOH A 83 583 148 HOH HOH . I 5 HOH A 84 584 149 HOH HOH . I 5 HOH A 85 585 150 HOH HOH . I 5 HOH A 86 586 151 HOH HOH . I 5 HOH A 87 587 153 HOH HOH . I 5 HOH A 88 588 156 HOH HOH . I 5 HOH A 89 589 157 HOH HOH . I 5 HOH A 90 590 159 HOH HOH . I 5 HOH A 91 591 161 HOH HOH . I 5 HOH A 92 592 162 HOH HOH . I 5 HOH A 93 593 163 HOH HOH . I 5 HOH A 94 594 164 HOH HOH . I 5 HOH A 95 595 166 HOH HOH . I 5 HOH A 96 596 167 HOH HOH . I 5 HOH A 97 597 169 HOH HOH . I 5 HOH A 98 598 171 HOH HOH . I 5 HOH A 99 599 174 HOH HOH . I 5 HOH A 100 600 176 HOH HOH . I 5 HOH A 101 601 178 HOH HOH . I 5 HOH A 102 602 179 HOH HOH . I 5 HOH A 103 603 181 HOH HOH . I 5 HOH A 104 604 182 HOH HOH . I 5 HOH A 105 605 184 HOH HOH . I 5 HOH A 106 606 186 HOH HOH . I 5 HOH A 107 607 187 HOH HOH . I 5 HOH A 108 608 189 HOH HOH . I 5 HOH A 109 609 192 HOH HOH . I 5 HOH A 110 610 193 HOH HOH . I 5 HOH A 111 611 195 HOH HOH . I 5 HOH A 112 612 196 HOH HOH . I 5 HOH A 113 613 197 HOH HOH . I 5 HOH A 114 614 201 HOH HOH . I 5 HOH A 115 615 203 HOH HOH . I 5 HOH A 116 616 204 HOH HOH . I 5 HOH A 117 617 205 HOH HOH . I 5 HOH A 118 618 206 HOH HOH . I 5 HOH A 119 619 207 HOH HOH . I 5 HOH A 120 620 210 HOH HOH . J 5 HOH B 1 501 3 HOH HOH . J 5 HOH B 2 502 6 HOH HOH . J 5 HOH B 3 503 10 HOH HOH . J 5 HOH B 4 504 11 HOH HOH . J 5 HOH B 5 505 12 HOH HOH . J 5 HOH B 6 506 14 HOH HOH . J 5 HOH B 7 507 16 HOH HOH . J 5 HOH B 8 508 17 HOH HOH . J 5 HOH B 9 509 20 HOH HOH . J 5 HOH B 10 510 23 HOH HOH . J 5 HOH B 11 511 24 HOH HOH . J 5 HOH B 12 512 28 HOH HOH . J 5 HOH B 13 513 29 HOH HOH . J 5 HOH B 14 514 30 HOH HOH . J 5 HOH B 15 515 31 HOH HOH . J 5 HOH B 16 516 37 HOH HOH . J 5 HOH B 17 517 38 HOH HOH . J 5 HOH B 18 518 40 HOH HOH . J 5 HOH B 19 519 41 HOH HOH . J 5 HOH B 20 520 42 HOH HOH . J 5 HOH B 21 521 47 HOH HOH . J 5 HOH B 22 522 48 HOH HOH . J 5 HOH B 23 523 50 HOH HOH . J 5 HOH B 24 524 51 HOH HOH . J 5 HOH B 25 525 55 HOH HOH . J 5 HOH B 26 526 57 HOH HOH . J 5 HOH B 27 527 59 HOH HOH . J 5 HOH B 28 528 61 HOH HOH . J 5 HOH B 29 529 63 HOH HOH . J 5 HOH B 30 530 64 HOH HOH . J 5 HOH B 31 531 65 HOH HOH . J 5 HOH B 32 532 66 HOH HOH . J 5 HOH B 33 533 68 HOH HOH . J 5 HOH B 34 534 73 HOH HOH . J 5 HOH B 35 535 75 HOH HOH . J 5 HOH B 36 536 80 HOH HOH . J 5 HOH B 37 537 83 HOH HOH . J 5 HOH B 38 538 85 HOH HOH . J 5 HOH B 39 539 88 HOH HOH . J 5 HOH B 40 540 89 HOH HOH . J 5 HOH B 41 541 92 HOH HOH . J 5 HOH B 42 542 94 HOH HOH . J 5 HOH B 43 543 95 HOH HOH . J 5 HOH B 44 544 96 HOH HOH . J 5 HOH B 45 545 98 HOH HOH . J 5 HOH B 46 546 101 HOH HOH . J 5 HOH B 47 547 107 HOH HOH . J 5 HOH B 48 548 109 HOH HOH . J 5 HOH B 49 549 113 HOH HOH . J 5 HOH B 50 550 115 HOH HOH . J 5 HOH B 51 551 118 HOH HOH . J 5 HOH B 52 552 121 HOH HOH . J 5 HOH B 53 553 122 HOH HOH . J 5 HOH B 54 554 127 HOH HOH . J 5 HOH B 55 555 128 HOH HOH . J 5 HOH B 56 556 129 HOH HOH . J 5 HOH B 57 557 131 HOH HOH . J 5 HOH B 58 558 135 HOH HOH . J 5 HOH B 59 559 136 HOH HOH . J 5 HOH B 60 560 137 HOH HOH . J 5 HOH B 61 561 139 HOH HOH . J 5 HOH B 62 562 140 HOH HOH . J 5 HOH B 63 563 141 HOH HOH . J 5 HOH B 64 564 143 HOH HOH . J 5 HOH B 65 565 144 HOH HOH . J 5 HOH B 66 566 152 HOH HOH . J 5 HOH B 67 567 154 HOH HOH . J 5 HOH B 68 568 155 HOH HOH . J 5 HOH B 69 569 158 HOH HOH . J 5 HOH B 70 570 160 HOH HOH . J 5 HOH B 71 571 165 HOH HOH . J 5 HOH B 72 572 168 HOH HOH . J 5 HOH B 73 573 170 HOH HOH . J 5 HOH B 74 574 172 HOH HOH . J 5 HOH B 75 575 173 HOH HOH . J 5 HOH B 76 576 175 HOH HOH . J 5 HOH B 77 577 177 HOH HOH . J 5 HOH B 78 578 180 HOH HOH . J 5 HOH B 79 579 183 HOH HOH . J 5 HOH B 80 580 185 HOH HOH . J 5 HOH B 81 581 188 HOH HOH . J 5 HOH B 82 582 190 HOH HOH . J 5 HOH B 83 583 191 HOH HOH . J 5 HOH B 84 584 194 HOH HOH . J 5 HOH B 85 585 198 HOH HOH . J 5 HOH B 86 586 199 HOH HOH . J 5 HOH B 87 587 200 HOH HOH . J 5 HOH B 88 588 202 HOH HOH . J 5 HOH B 89 589 208 HOH HOH . J 5 HOH B 90 590 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0MK . . . H 3 26.909 0.389 -25.821 1 74.39 ? C1 0MK 403 B 1 HETATM 2 C C2 0MK . . . H 3 25.474 0.088 -26.257 1 74.45 ? C2 0MK 403 B 1 HETATM 3 C C3 0MK . . . H 3 25.339 -1.375 -26.687 1 74.29 ? C3 0MK 403 B 1 HETATM 4 C C4 0MK . . . H 3 25.864 -2.317 -25.601 1 73.88 ? C4 0MK 403 B 1 HETATM 5 C C5 0MK . . . H 3 27.285 -1.919 -25.19 1 73.76 ? C5 0MK 403 B 1 HETATM 6 O O1 0MK . . . H 3 26.976 1.702 -25.287 1 74.4 ? O1 0MK 403 B 1 HETATM 7 O O2 0MK . . . H 3 25.124 0.936 -27.338 1 75.65 ? O2 0MK 403 B 1 HETATM 8 O O3 0MK . . . H 3 26.056 -1.589 -27.893 1 74.55 ? O3 0MK 403 B 1 HETATM 9 O O4 0MK . . . H 3 25.868 -3.649 -26.091 1 74.42 ? O4 0MK 403 B 1 HETATM 10 O O5 0MK . . . H 3 27.315 -0.534 -24.79 1 74.03 ? O5 0MK 403 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 10 #