data_3WW2 # _model_server_result.job_id ftQjuY7ulHDrY0IGEb_9KQ _model_server_result.datetime_utc '2024-12-07 21:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ww2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 3WW2 # _exptl.entry_id 3WW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description L-psicose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WW2 _cell.length_a 76.78 _cell.length_b 88.2 _cell.length_c 151.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 113 A HIS 106 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A NE2 HIS 115 A HIS 108 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 A OE2 GLU 120 A GLU 113 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 A NE2 HIS 195 A HIS 188 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 C MN MN . A MN 401 1_555 D O2 SF6 . A SF6 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 C MN MN . A MN 401 1_555 D O1 SF6 . A SF6 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 B NE2 HIS 113 B HIS 106 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 B NE2 HIS 115 B HIS 108 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 B OE2 GLU 120 B GLU 113 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 B NE2 HIS 195 B HIS 188 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc11 E MN MN . B MN 401 1_555 F O2 LPK . B LPK 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc12 E MN MN . B MN 401 1_555 F O1 LPK . B LPK 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id LPK _chem_comp.mon_nstd_flag . _chem_comp.name L-psicose _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 LPK sing 194 n n C6 C5 LPK sing 195 n n O5 C5 LPK sing 196 n n O4 C4 LPK sing 197 n n C5 C4 LPK sing 198 n n C4 C3 LPK sing 199 n n O2 C2 LPK doub 200 n n C3 C2 LPK sing 201 n n C3 O3 LPK sing 202 n n C2 C1 LPK sing 203 n n O1 C1 LPK sing 204 n n C1 H11 LPK sing 205 n n C1 H12 LPK sing 206 n n O1 HO1 LPK sing 207 n n C3 H3 LPK sing 208 n n O3 HO3 LPK sing 209 n n C4 H4 LPK sing 210 n n O4 HO4 LPK sing 211 n n C5 H5 LPK sing 212 n n O5 HO5 LPK sing 213 n n C6 H61 LPK sing 214 n n C6 H62 LPK sing 215 n n O6 HO6 LPK sing 216 n n # _atom_sites.entry_id 3WW2 _atom_sites.fract_transf_matrix[1][1] 0.013024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 401 401 MN MN . D 3 SF6 A 1 402 501 SF6 PSF . E 2 MN B 1 401 401 MN MN . F 4 LPK B 1 402 501 LPK PSK . G 5 SF9 B 1 403 502 SF9 PSF . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 2 HOH HOH . H 6 HOH A 3 503 3 HOH HOH . H 6 HOH A 4 504 4 HOH HOH . H 6 HOH A 5 505 5 HOH HOH . H 6 HOH A 6 506 7 HOH HOH . H 6 HOH A 7 507 11 HOH HOH . H 6 HOH A 8 508 16 HOH HOH . H 6 HOH A 9 509 17 HOH HOH . H 6 HOH A 10 510 19 HOH HOH . H 6 HOH A 11 511 21 HOH HOH . H 6 HOH A 12 512 22 HOH HOH . H 6 HOH A 13 513 24 HOH HOH . H 6 HOH A 14 514 25 HOH HOH . H 6 HOH A 15 515 26 HOH HOH . H 6 HOH A 16 516 27 HOH HOH . H 6 HOH A 17 517 28 HOH HOH . H 6 HOH A 18 518 29 HOH HOH . H 6 HOH A 19 519 30 HOH HOH . H 6 HOH A 20 520 31 HOH HOH . H 6 HOH A 21 521 35 HOH HOH . H 6 HOH A 22 522 36 HOH HOH . H 6 HOH A 23 523 37 HOH HOH . H 6 HOH A 24 524 39 HOH HOH . H 6 HOH A 25 525 41 HOH HOH . H 6 HOH A 26 526 44 HOH HOH . H 6 HOH A 27 527 45 HOH HOH . H 6 HOH A 28 528 46 HOH HOH . H 6 HOH A 29 529 48 HOH HOH . H 6 HOH A 30 530 51 HOH HOH . H 6 HOH A 31 531 52 HOH HOH . H 6 HOH A 32 532 54 HOH HOH . H 6 HOH A 33 533 55 HOH HOH . H 6 HOH A 34 534 58 HOH HOH . H 6 HOH A 35 535 60 HOH HOH . H 6 HOH A 36 536 67 HOH HOH . H 6 HOH A 37 537 68 HOH HOH . H 6 HOH A 38 538 69 HOH HOH . H 6 HOH A 39 539 71 HOH HOH . H 6 HOH A 40 540 73 HOH HOH . H 6 HOH A 41 541 74 HOH HOH . H 6 HOH A 42 542 76 HOH HOH . H 6 HOH A 43 543 77 HOH HOH . H 6 HOH A 44 544 79 HOH HOH . H 6 HOH A 45 545 81 HOH HOH . H 6 HOH A 46 546 82 HOH HOH . H 6 HOH A 47 547 84 HOH HOH . H 6 HOH A 48 548 85 HOH HOH . H 6 HOH A 49 549 87 HOH HOH . H 6 HOH A 50 550 88 HOH HOH . H 6 HOH A 51 551 91 HOH HOH . H 6 HOH A 52 552 92 HOH HOH . H 6 HOH A 53 553 94 HOH HOH . H 6 HOH A 54 554 95 HOH HOH . H 6 HOH A 55 555 97 HOH HOH . H 6 HOH A 56 556 100 HOH HOH . I 6 HOH B 1 501 6 HOH HOH . I 6 HOH B 2 502 8 HOH HOH . I 6 HOH B 3 503 9 HOH HOH . I 6 HOH B 4 504 10 HOH HOH . I 6 HOH B 5 505 12 HOH HOH . I 6 HOH B 6 506 13 HOH HOH . I 6 HOH B 7 507 14 HOH HOH . I 6 HOH B 8 508 15 HOH HOH . I 6 HOH B 9 509 18 HOH HOH . I 6 HOH B 10 510 20 HOH HOH . I 6 HOH B 11 511 23 HOH HOH . I 6 HOH B 12 512 32 HOH HOH . I 6 HOH B 13 513 33 HOH HOH . I 6 HOH B 14 514 34 HOH HOH . I 6 HOH B 15 515 38 HOH HOH . I 6 HOH B 16 516 40 HOH HOH . I 6 HOH B 17 517 42 HOH HOH . I 6 HOH B 18 518 43 HOH HOH . I 6 HOH B 19 519 47 HOH HOH . I 6 HOH B 20 520 49 HOH HOH . I 6 HOH B 21 521 50 HOH HOH . I 6 HOH B 22 522 53 HOH HOH . I 6 HOH B 23 523 56 HOH HOH . I 6 HOH B 24 524 57 HOH HOH . I 6 HOH B 25 525 59 HOH HOH . I 6 HOH B 26 526 61 HOH HOH . I 6 HOH B 27 527 62 HOH HOH . I 6 HOH B 28 528 63 HOH HOH . I 6 HOH B 29 529 64 HOH HOH . I 6 HOH B 30 530 65 HOH HOH . I 6 HOH B 31 531 66 HOH HOH . I 6 HOH B 32 532 70 HOH HOH . I 6 HOH B 33 533 72 HOH HOH . I 6 HOH B 34 534 75 HOH HOH . I 6 HOH B 35 535 78 HOH HOH . I 6 HOH B 36 536 80 HOH HOH . I 6 HOH B 37 537 83 HOH HOH . I 6 HOH B 38 538 86 HOH HOH . I 6 HOH B 39 539 89 HOH HOH . I 6 HOH B 40 540 90 HOH HOH . I 6 HOH B 41 541 93 HOH HOH . I 6 HOH B 42 542 96 HOH HOH . I 6 HOH B 43 543 98 HOH HOH . I 6 HOH B 44 544 99 HOH HOH . I 6 HOH B 45 545 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPK . . . F 4 7.656 3.808 -22.635 1 62.07 ? C1 LPK 402 B 1 HETATM 2 O O1 LPK . . . F 4 8.837 4.561 -22.843 1 60.89 ? O1 LPK 402 B 1 HETATM 3 C C2 LPK . . . F 4 6.546 4.372 -23.489 1 63.36 ? C2 LPK 402 B 1 HETATM 4 O O2 LPK . . . F 4 6.776 5.333 -24.221 1 65.05 ? O2 LPK 402 B 1 HETATM 5 C C3 LPK . . . F 4 5.316 3.533 -23.749 1 63.85 ? C3 LPK 402 B 1 HETATM 6 O O3 LPK . . . F 4 4.162 4.261 -23.36 1 62.68 ? O3 LPK 402 B 1 HETATM 7 C C4 LPK . . . F 4 5.249 3.211 -25.236 1 64.93 ? C4 LPK 402 B 1 HETATM 8 O O4 LPK . . . F 4 6.56 2.991 -25.734 1 63.39 ? O4 LPK 402 B 1 HETATM 9 C C5 LPK . . . F 4 4.389 1.98 -25.486 1 66.44 ? C5 LPK 402 B 1 HETATM 10 O O5 LPK . . . F 4 3.096 2.382 -25.914 1 69.27 ? O5 LPK 402 B 1 HETATM 11 C C6 LPK . . . F 4 5.001 1.048 -26.513 1 67.5 ? C6 LPK 402 B 1 HETATM 12 O O6 LPK . . . F 4 4.628 1.425 -27.83 1 67.91 ? O6 LPK 402 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #