data_3WWM # _model_server_result.job_id z16o3MjW975TNtLtcYGXig _model_server_result.datetime_utc '2024-11-22 17:01:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3WWM # _exptl.entry_id 3WWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WWM _cell.length_a 80.49 _cell.length_b 80.49 _cell.length_c 152.281 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 76.1405 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3WWM _atom_sites.fract_transf_matrix[1][1] 0.012424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 301 1 ADP ADP . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 11.081 1.64 25.962 1 67.06 ? PB ADP 301 A 1 HETATM 2 O O1B ADP . . . B 2 11.655 3.002 26.243 1 68.41 ? O1B ADP 301 A 1 HETATM 3 O O2B ADP . . . B 2 12.071 0.515 26.135 1 68.49 ? O2B ADP 301 A 1 HETATM 4 O O3B ADP . . . B 2 9.692 1.422 26.507 1 66.95 ? O3B ADP 301 A 1 HETATM 5 P PA ADP . . . B 2 11.355 2.416 23.2 1 66.39 ? PA ADP 301 A 1 HETATM 6 O O1A ADP . . . B 2 10.799 1.78 21.947 1 66.14 ? O1A ADP 301 A 1 HETATM 7 O O2A ADP . . . B 2 12.842 2.497 23.4 1 68.19 ? O2A ADP 301 A 1 HETATM 8 O O3A ADP . . . B 2 10.735 1.54 24.396 1 73.66 ? O3A ADP 301 A 1 HETATM 9 O O5' ADP . . . B 2 10.679 3.869 23.443 1 77.37 ? O5' ADP 301 A 1 HETATM 10 C C5' ADP . . . B 2 9.781 4.524 22.524 1 84.99 ? C5' ADP 301 A 1 HETATM 11 C C4' ADP . . . B 2 10.596 5.204 21.424 1 89.78 ? C4' ADP 301 A 1 HETATM 12 O O4' ADP . . . B 2 9.897 5.395 20.185 1 94.88 ? O4' ADP 301 A 1 HETATM 13 C C3' ADP . . . B 2 11.094 6.599 21.762 1 90.59 ? C3' ADP 301 A 1 HETATM 14 O O3' ADP . . . B 2 12.205 6.603 22.662 1 85.15 ? O3' ADP 301 A 1 HETATM 15 C C2' ADP . . . B 2 11.478 7.124 20.389 1 97.72 ? C2' ADP 301 A 1 HETATM 16 O O2' ADP . . . B 2 12.895 7.135 20.187 1 94.83 ? O2' ADP 301 A 1 HETATM 17 C C1' ADP . . . B 2 10.808 6.17 19.397 1 101.49 ? C1' ADP 301 A 1 HETATM 18 N N9 ADP . . . B 2 10.219 6.975 18.292 1 113.77 ? N9 ADP 301 A 1 HETATM 19 C C8 ADP . . . B 2 9.241 7.901 18.381 1 118.55 ? C8 ADP 301 A 1 HETATM 20 N N7 ADP . . . B 2 8.988 8.452 17.162 1 119.48 ? N7 ADP 301 A 1 HETATM 21 C C5 ADP . . . B 2 9.82 7.88 16.275 1 121.94 ? C5 ADP 301 A 1 HETATM 22 C C6 ADP . . . B 2 10.089 7.99 14.821 1 126.48 ? C6 ADP 301 A 1 HETATM 23 N N6 ADP . . . B 2 9.395 8.852 14.057 1 127.52 ? N6 ADP 301 A 1 HETATM 24 N N1 ADP . . . B 2 11.052 7.211 14.279 1 130.07 ? N1 ADP 301 A 1 HETATM 25 C C2 ADP . . . B 2 11.761 6.345 15.034 1 134.64 ? C2 ADP 301 A 1 HETATM 26 N N3 ADP . . . B 2 11.565 6.194 16.361 1 128.14 ? N3 ADP 301 A 1 HETATM 27 C C4 ADP . . . B 2 10.632 6.917 17.026 1 119.8 ? C4 ADP 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #