data_3WWO # _model_server_result.job_id E8n6_jaMq-ARf1J7DKBsTA _model_server_result.datetime_utc '2024-12-22 01:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3WWO # _exptl.entry_id 3WWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WWO _cell.length_a 48.45 _cell.length_b 68.529 _cell.length_c 162.116 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C CA CA . A CA 301 1_555 D O2 MPD . A MPD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc2 F CA CA . B CA 301 1_555 G O2 MPD . B MPD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3WWO _atom_sites.fract_transf_matrix[1][1] 0.02064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 1 CA CA . D 3 MPD A 1 302 3 MPD MPD . E 3 MPD A 1 303 4 MPD MPD . F 2 CA B 1 301 2 CA CA . G 3 MPD B 1 302 1 MPD MPD . H 3 MPD B 1 303 2 MPD MPD . I 4 HOH A 1 401 2 HOH HOH . I 4 HOH A 2 402 4 HOH HOH . I 4 HOH A 3 403 5 HOH HOH . I 4 HOH A 4 404 8 HOH HOH . I 4 HOH A 5 405 11 HOH HOH . I 4 HOH A 6 406 12 HOH HOH . I 4 HOH A 7 407 16 HOH HOH . I 4 HOH A 8 408 17 HOH HOH . I 4 HOH A 9 409 19 HOH HOH . I 4 HOH A 10 410 23 HOH HOH . I 4 HOH A 11 411 24 HOH HOH . I 4 HOH A 12 412 27 HOH HOH . I 4 HOH A 13 413 28 HOH HOH . I 4 HOH A 14 414 29 HOH HOH . I 4 HOH A 15 415 31 HOH HOH . I 4 HOH A 16 416 34 HOH HOH . I 4 HOH A 17 417 41 HOH HOH . I 4 HOH A 18 418 42 HOH HOH . I 4 HOH A 19 419 43 HOH HOH . J 4 HOH B 1 401 1 HOH HOH . J 4 HOH B 2 402 3 HOH HOH . J 4 HOH B 3 403 6 HOH HOH . J 4 HOH B 4 404 7 HOH HOH . J 4 HOH B 5 405 9 HOH HOH . J 4 HOH B 6 406 10 HOH HOH . J 4 HOH B 7 407 13 HOH HOH . J 4 HOH B 8 408 14 HOH HOH . J 4 HOH B 9 409 15 HOH HOH . J 4 HOH B 10 410 18 HOH HOH . J 4 HOH B 11 411 20 HOH HOH . J 4 HOH B 12 412 21 HOH HOH . J 4 HOH B 13 413 22 HOH HOH . J 4 HOH B 14 414 25 HOH HOH . J 4 HOH B 15 415 26 HOH HOH . J 4 HOH B 16 416 30 HOH HOH . J 4 HOH B 17 417 32 HOH HOH . J 4 HOH B 18 418 33 HOH HOH . J 4 HOH B 19 419 35 HOH HOH . J 4 HOH B 20 420 36 HOH HOH . J 4 HOH B 21 421 37 HOH HOH . J 4 HOH B 22 422 38 HOH HOH . J 4 HOH B 23 423 39 HOH HOH . J 4 HOH B 24 424 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 3 9.933 33.728 5.535 1 30.44 ? C1 MPD 303 B 1 HETATM 2 C C2 MPD . . . H 3 11.198 33.583 4.703 1 32.11 ? C2 MPD 303 B 1 HETATM 3 O O2 MPD . . . H 3 11.788 34.882 4.578 1 30.78 ? O2 MPD 303 B 1 HETATM 4 C CM MPD . . . H 3 12.149 32.654 5.446 1 35.63 ? CM MPD 303 B 1 HETATM 5 C C3 MPD . . . H 3 10.938 33.068 3.291 1 30.99 ? C3 MPD 303 B 1 HETATM 6 C C4 MPD . . . H 3 10.281 31.693 3.271 1 32.08 ? C4 MPD 303 B 1 HETATM 7 O O4 MPD . . . H 3 9.344 31.612 2.192 1 35.06 ? O4 MPD 303 B 1 HETATM 8 C C5 MPD . . . H 3 11.307 30.583 3.091 1 33.78 ? C5 MPD 303 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #