data_3WXB # _model_server_result.job_id f-VKORJA1q5TI7Hl-vzhiQ _model_server_result.datetime_utc '2024-11-22 23:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3WXB # _exptl.entry_id 3WXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WXB _cell.length_a 74.568 _cell.length_b 74.568 _cell.length_c 190.925 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3WXB _atom_sites.fract_transf_matrix[1][1] 0.013411 _atom_sites.fract_transf_matrix[1][2] 0.007743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 300 300 NDP NDP . D 3 EDO A 1 301 301 EDO EDO . E 2 NDP B 1 300 300 NDP NDP . F 4 HOH A 1 401 2 HOH HOH . F 4 HOH A 2 402 3 HOH HOH . F 4 HOH A 3 403 6 HOH HOH . F 4 HOH A 4 404 8 HOH HOH . F 4 HOH A 5 405 9 HOH HOH . F 4 HOH A 6 406 10 HOH HOH . F 4 HOH A 7 407 11 HOH HOH . F 4 HOH A 8 408 13 HOH HOH . F 4 HOH A 9 409 15 HOH HOH . F 4 HOH A 10 410 17 HOH HOH . F 4 HOH A 11 411 19 HOH HOH . F 4 HOH A 12 412 20 HOH HOH . F 4 HOH A 13 413 22 HOH HOH . F 4 HOH A 14 414 23 HOH HOH . F 4 HOH A 15 415 25 HOH HOH . F 4 HOH A 16 416 26 HOH HOH . F 4 HOH A 17 417 27 HOH HOH . F 4 HOH A 18 418 28 HOH HOH . F 4 HOH A 19 419 29 HOH HOH . F 4 HOH A 20 420 30 HOH HOH . F 4 HOH A 21 421 32 HOH HOH . F 4 HOH A 22 422 33 HOH HOH . F 4 HOH A 23 423 36 HOH HOH . F 4 HOH A 24 424 37 HOH HOH . F 4 HOH A 25 425 40 HOH HOH . F 4 HOH A 26 426 41 HOH HOH . F 4 HOH A 27 427 44 HOH HOH . F 4 HOH A 28 428 45 HOH HOH . F 4 HOH A 29 429 46 HOH HOH . F 4 HOH A 30 430 49 HOH HOH . F 4 HOH A 31 431 52 HOH HOH . F 4 HOH A 32 432 55 HOH HOH . F 4 HOH A 33 433 57 HOH HOH . F 4 HOH A 34 434 58 HOH HOH . F 4 HOH A 35 435 60 HOH HOH . F 4 HOH A 36 436 61 HOH HOH . F 4 HOH A 37 437 63 HOH HOH . F 4 HOH A 38 438 64 HOH HOH . F 4 HOH A 39 439 65 HOH HOH . F 4 HOH A 40 440 68 HOH HOH . F 4 HOH A 41 441 69 HOH HOH . F 4 HOH A 42 442 73 HOH HOH . F 4 HOH A 43 443 74 HOH HOH . F 4 HOH A 44 444 76 HOH HOH . F 4 HOH A 45 445 77 HOH HOH . F 4 HOH A 46 446 78 HOH HOH . F 4 HOH A 47 447 80 HOH HOH . F 4 HOH A 48 448 81 HOH HOH . F 4 HOH A 49 449 82 HOH HOH . F 4 HOH A 50 450 84 HOH HOH . F 4 HOH A 51 451 86 HOH HOH . F 4 HOH A 52 452 87 HOH HOH . F 4 HOH A 53 453 89 HOH HOH . F 4 HOH A 54 454 93 HOH HOH . F 4 HOH A 55 455 95 HOH HOH . F 4 HOH A 56 456 96 HOH HOH . F 4 HOH A 57 457 100 HOH HOH . F 4 HOH A 58 458 101 HOH HOH . F 4 HOH A 59 459 102 HOH HOH . F 4 HOH A 60 460 103 HOH HOH . F 4 HOH A 61 461 105 HOH HOH . F 4 HOH A 62 462 107 HOH HOH . F 4 HOH A 63 463 108 HOH HOH . F 4 HOH A 64 464 112 HOH HOH . F 4 HOH A 65 465 119 HOH HOH . F 4 HOH A 66 466 120 HOH HOH . F 4 HOH A 67 467 121 HOH HOH . F 4 HOH A 68 468 123 HOH HOH . F 4 HOH A 69 469 126 HOH HOH . F 4 HOH A 70 470 128 HOH HOH . F 4 HOH A 71 471 130 HOH HOH . F 4 HOH A 72 472 131 HOH HOH . F 4 HOH A 73 473 132 HOH HOH . F 4 HOH A 74 474 133 HOH HOH . F 4 HOH A 75 475 134 HOH HOH . F 4 HOH A 76 476 139 HOH HOH . F 4 HOH A 77 477 142 HOH HOH . F 4 HOH A 78 478 143 HOH HOH . F 4 HOH A 79 479 144 HOH HOH . F 4 HOH A 80 480 145 HOH HOH . F 4 HOH A 81 481 147 HOH HOH . F 4 HOH A 82 482 148 HOH HOH . F 4 HOH A 83 483 149 HOH HOH . F 4 HOH A 84 484 151 HOH HOH . F 4 HOH A 85 485 152 HOH HOH . F 4 HOH A 86 486 154 HOH HOH . F 4 HOH A 87 487 156 HOH HOH . F 4 HOH A 88 488 157 HOH HOH . F 4 HOH A 89 489 160 HOH HOH . F 4 HOH A 90 490 161 HOH HOH . F 4 HOH A 91 491 163 HOH HOH . F 4 HOH A 92 492 165 HOH HOH . F 4 HOH A 93 493 168 HOH HOH . F 4 HOH A 94 494 169 HOH HOH . F 4 HOH A 95 495 170 HOH HOH . F 4 HOH A 96 496 178 HOH HOH . F 4 HOH A 97 497 180 HOH HOH . F 4 HOH A 98 498 181 HOH HOH . F 4 HOH A 99 499 182 HOH HOH . F 4 HOH A 100 500 184 HOH HOH . F 4 HOH A 101 501 185 HOH HOH . F 4 HOH A 102 502 186 HOH HOH . F 4 HOH A 103 503 188 HOH HOH . F 4 HOH A 104 504 192 HOH HOH . F 4 HOH A 105 505 193 HOH HOH . F 4 HOH A 106 506 194 HOH HOH . F 4 HOH A 107 507 195 HOH HOH . F 4 HOH A 108 508 197 HOH HOH . F 4 HOH A 109 509 199 HOH HOH . F 4 HOH A 110 510 203 HOH HOH . F 4 HOH A 111 511 204 HOH HOH . F 4 HOH A 112 512 205 HOH HOH . F 4 HOH A 113 513 207 HOH HOH . F 4 HOH A 114 514 208 HOH HOH . F 4 HOH A 115 515 209 HOH HOH . F 4 HOH A 116 516 214 HOH HOH . F 4 HOH A 117 517 216 HOH HOH . F 4 HOH A 118 518 217 HOH HOH . F 4 HOH A 119 519 218 HOH HOH . F 4 HOH A 120 520 219 HOH HOH . F 4 HOH A 121 521 220 HOH HOH . G 4 HOH B 1 401 1 HOH HOH . G 4 HOH B 2 402 4 HOH HOH . G 4 HOH B 3 403 5 HOH HOH . G 4 HOH B 4 404 7 HOH HOH . G 4 HOH B 5 405 12 HOH HOH . G 4 HOH B 6 406 14 HOH HOH . G 4 HOH B 7 407 16 HOH HOH . G 4 HOH B 8 408 18 HOH HOH . G 4 HOH B 9 409 21 HOH HOH . G 4 HOH B 10 410 24 HOH HOH . G 4 HOH B 11 411 31 HOH HOH . G 4 HOH B 12 412 34 HOH HOH . G 4 HOH B 13 413 35 HOH HOH . G 4 HOH B 14 414 38 HOH HOH . G 4 HOH B 15 415 39 HOH HOH . G 4 HOH B 16 416 42 HOH HOH . G 4 HOH B 17 417 43 HOH HOH . G 4 HOH B 18 418 47 HOH HOH . G 4 HOH B 19 419 48 HOH HOH . G 4 HOH B 20 420 50 HOH HOH . G 4 HOH B 21 421 51 HOH HOH . G 4 HOH B 22 422 53 HOH HOH . G 4 HOH B 23 423 54 HOH HOH . G 4 HOH B 24 424 56 HOH HOH . G 4 HOH B 25 425 59 HOH HOH . G 4 HOH B 26 426 62 HOH HOH . G 4 HOH B 27 427 66 HOH HOH . G 4 HOH B 28 428 67 HOH HOH . G 4 HOH B 29 429 70 HOH HOH . G 4 HOH B 30 430 71 HOH HOH . G 4 HOH B 31 431 72 HOH HOH . G 4 HOH B 32 432 75 HOH HOH . G 4 HOH B 33 433 79 HOH HOH . G 4 HOH B 34 434 83 HOH HOH . G 4 HOH B 35 435 85 HOH HOH . G 4 HOH B 36 436 88 HOH HOH . G 4 HOH B 37 437 90 HOH HOH . G 4 HOH B 38 438 91 HOH HOH . G 4 HOH B 39 439 92 HOH HOH . G 4 HOH B 40 440 94 HOH HOH . G 4 HOH B 41 441 97 HOH HOH . G 4 HOH B 42 442 98 HOH HOH . G 4 HOH B 43 443 99 HOH HOH . G 4 HOH B 44 444 104 HOH HOH . G 4 HOH B 45 445 106 HOH HOH . G 4 HOH B 46 446 109 HOH HOH . G 4 HOH B 47 447 110 HOH HOH . G 4 HOH B 48 448 111 HOH HOH . G 4 HOH B 49 449 113 HOH HOH . G 4 HOH B 50 450 114 HOH HOH . G 4 HOH B 51 451 115 HOH HOH . G 4 HOH B 52 452 116 HOH HOH . G 4 HOH B 53 453 117 HOH HOH . G 4 HOH B 54 454 118 HOH HOH . G 4 HOH B 55 455 122 HOH HOH . G 4 HOH B 56 456 124 HOH HOH . G 4 HOH B 57 457 125 HOH HOH . G 4 HOH B 58 458 127 HOH HOH . G 4 HOH B 59 459 129 HOH HOH . G 4 HOH B 60 460 135 HOH HOH . G 4 HOH B 61 461 136 HOH HOH . G 4 HOH B 62 462 137 HOH HOH . G 4 HOH B 63 463 138 HOH HOH . G 4 HOH B 64 464 140 HOH HOH . G 4 HOH B 65 465 141 HOH HOH . G 4 HOH B 66 466 146 HOH HOH . G 4 HOH B 67 467 150 HOH HOH . G 4 HOH B 68 468 153 HOH HOH . G 4 HOH B 69 469 155 HOH HOH . G 4 HOH B 70 470 158 HOH HOH . G 4 HOH B 71 471 159 HOH HOH . G 4 HOH B 72 472 162 HOH HOH . G 4 HOH B 73 473 164 HOH HOH . G 4 HOH B 74 474 166 HOH HOH . G 4 HOH B 75 475 167 HOH HOH . G 4 HOH B 76 476 171 HOH HOH . G 4 HOH B 77 477 172 HOH HOH . G 4 HOH B 78 478 173 HOH HOH . G 4 HOH B 79 479 174 HOH HOH . G 4 HOH B 80 480 175 HOH HOH . G 4 HOH B 81 481 176 HOH HOH . G 4 HOH B 82 482 177 HOH HOH . G 4 HOH B 83 483 179 HOH HOH . G 4 HOH B 84 484 183 HOH HOH . G 4 HOH B 85 485 187 HOH HOH . G 4 HOH B 86 486 189 HOH HOH . G 4 HOH B 87 487 190 HOH HOH . G 4 HOH B 88 488 191 HOH HOH . G 4 HOH B 89 489 196 HOH HOH . G 4 HOH B 90 490 198 HOH HOH . G 4 HOH B 91 491 200 HOH HOH . G 4 HOH B 92 492 201 HOH HOH . G 4 HOH B 93 493 202 HOH HOH . G 4 HOH B 94 494 206 HOH HOH . G 4 HOH B 95 495 210 HOH HOH . G 4 HOH B 96 496 211 HOH HOH . G 4 HOH B 97 497 212 HOH HOH . G 4 HOH B 98 498 213 HOH HOH . G 4 HOH B 99 499 215 HOH HOH . G 4 HOH B 100 500 221 HOH HOH . G 4 HOH B 101 501 222 HOH HOH . G 4 HOH B 102 502 223 HOH HOH . G 4 HOH B 103 503 224 HOH HOH . G 4 HOH B 104 504 225 HOH HOH . G 4 HOH B 105 505 226 HOH HOH . G 4 HOH B 106 506 227 HOH HOH . G 4 HOH B 107 507 228 HOH HOH . G 4 HOH B 108 508 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 53.411 -8.835 -10.978 1 42.05 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . D 3 53.213 -7.561 -10.29 1 48.77 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . D 3 53.981 -9.84 -9.968 1 32.56 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . D 3 53.012 -10.918 -10.1 1 27.99 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #