data_3WXJ
#
_model_server_result.job_id            5_PmIeOETvRQCaqcuaXVGQ 
_model_server_result.datetime_utc      '2024-12-23 01:54:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wxj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":701}' 
#
_entry.id    3WXJ 
#
_exptl.entry_id    3WXJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.074 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SN-GLYCEROL-3-PHOSPHATE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.02 
_cell.angle_gamma         90 
_cell.entry_id            3WXJ 
_cell.length_a            64.165 
_cell.length_b            120.89 
_cell.length_c            153.553 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WXJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C3 H9 O6 P' 
_chem_comp.formula_weight    172.074 
_chem_comp.id                G3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SN-GLYCEROL-3-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 G3P sing 83 n n 
C1 C2 G3P sing 84 n n 
C2 O2 G3P sing 85 n n 
C2 C3 G3P sing 86 n n 
C3 O1P G3P sing 87 n n 
O1P P G3P sing 88 n n 
O4P P G3P sing 89 n n 
O2P P G3P doub 90 n n 
O3P P G3P sing 91 n n 
O1 HO1 G3P sing 92 n n 
C1 H11 G3P sing 93 n n 
C1 H12 G3P sing 94 n n 
C2 H2 G3P sing 95 n n 
O2 HO2 G3P sing 96 n n 
C3 H31 G3P sing 97 n n 
C3 H32 G3P sing 98 n n 
O3P HOP3 G3P sing 99 n n 
O4P HOP4 G3P sing 100 n n 
#
_atom_sites.entry_id                     3WXJ 
_atom_sites.fract_transf_matrix[1][1]    0.015585 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000005 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 601 601 GOL GOL . 
F 3 G3P B 1 601 703 G3P G3P . 
G 3 G3P C 1 701 701 G3P G3P . 
H 3 G3P D 1 601 601 G3P G3P . 
I 4 HOH A 1 701 1 HOH HOH . 
I 4 HOH A 2 702 3 HOH HOH . 
I 4 HOH A 3 703 11 HOH HOH . 
I 4 HOH A 4 704 12 HOH HOH . 
I 4 HOH A 5 705 14 HOH HOH . 
I 4 HOH A 6 706 17 HOH HOH . 
I 4 HOH A 7 707 27 HOH HOH . 
I 4 HOH A 8 708 28 HOH HOH . 
I 4 HOH A 9 709 31 HOH HOH . 
I 4 HOH A 10 710 32 HOH HOH . 
I 4 HOH A 11 711 34 HOH HOH . 
I 4 HOH A 12 712 35 HOH HOH . 
I 4 HOH A 13 713 38 HOH HOH . 
I 4 HOH A 14 714 40 HOH HOH . 
I 4 HOH A 15 715 44 HOH HOH . 
I 4 HOH A 16 716 45 HOH HOH . 
I 4 HOH A 17 717 48 HOH HOH . 
I 4 HOH A 18 718 49 HOH HOH . 
I 4 HOH A 19 719 50 HOH HOH . 
I 4 HOH A 20 720 51 HOH HOH . 
I 4 HOH A 21 721 54 HOH HOH . 
I 4 HOH A 22 722 56 HOH HOH . 
I 4 HOH A 23 723 68 HOH HOH . 
I 4 HOH A 24 724 70 HOH HOH . 
I 4 HOH A 25 725 75 HOH HOH . 
I 4 HOH A 26 726 89 HOH HOH . 
I 4 HOH A 27 727 97 HOH HOH . 
I 4 HOH A 28 728 107 HOH HOH . 
I 4 HOH A 29 729 109 HOH HOH . 
I 4 HOH A 30 730 110 HOH HOH . 
I 4 HOH A 31 731 111 HOH HOH . 
I 4 HOH A 32 732 115 HOH HOH . 
I 4 HOH A 33 733 116 HOH HOH . 
I 4 HOH A 34 734 131 HOH HOH . 
I 4 HOH A 35 735 135 HOH HOH . 
I 4 HOH A 36 736 141 HOH HOH . 
I 4 HOH A 37 737 147 HOH HOH . 
I 4 HOH A 38 738 148 HOH HOH . 
I 4 HOH A 39 739 149 HOH HOH . 
I 4 HOH A 40 740 150 HOH HOH . 
I 4 HOH A 41 741 153 HOH HOH . 
I 4 HOH A 42 742 154 HOH HOH . 
J 4 HOH B 1 701 5 HOH HOH . 
J 4 HOH B 2 702 7 HOH HOH . 
J 4 HOH B 3 703 8 HOH HOH . 
J 4 HOH B 4 704 10 HOH HOH . 
J 4 HOH B 5 705 19 HOH HOH . 
J 4 HOH B 6 706 20 HOH HOH . 
J 4 HOH B 7 707 22 HOH HOH . 
J 4 HOH B 8 708 26 HOH HOH . 
J 4 HOH B 9 709 33 HOH HOH . 
J 4 HOH B 10 710 36 HOH HOH . 
J 4 HOH B 11 711 42 HOH HOH . 
J 4 HOH B 12 712 43 HOH HOH . 
J 4 HOH B 13 713 58 HOH HOH . 
J 4 HOH B 14 714 73 HOH HOH . 
J 4 HOH B 15 715 78 HOH HOH . 
J 4 HOH B 16 716 88 HOH HOH . 
J 4 HOH B 17 717 101 HOH HOH . 
J 4 HOH B 18 718 104 HOH HOH . 
J 4 HOH B 19 719 114 HOH HOH . 
J 4 HOH B 20 720 120 HOH HOH . 
J 4 HOH B 21 721 125 HOH HOH . 
J 4 HOH B 22 722 126 HOH HOH . 
J 4 HOH B 23 723 127 HOH HOH . 
J 4 HOH B 24 724 134 HOH HOH . 
J 4 HOH B 25 725 137 HOH HOH . 
J 4 HOH B 26 726 138 HOH HOH . 
J 4 HOH B 27 727 143 HOH HOH . 
J 4 HOH B 28 728 144 HOH HOH . 
J 4 HOH B 29 729 145 HOH HOH . 
J 4 HOH B 30 730 151 HOH HOH . 
K 4 HOH C 1 801 2 HOH HOH . 
K 4 HOH C 2 802 4 HOH HOH . 
K 4 HOH C 3 803 13 HOH HOH . 
K 4 HOH C 4 804 16 HOH HOH . 
K 4 HOH C 5 805 18 HOH HOH . 
K 4 HOH C 6 806 21 HOH HOH . 
K 4 HOH C 7 807 46 HOH HOH . 
K 4 HOH C 8 808 47 HOH HOH . 
K 4 HOH C 9 809 53 HOH HOH . 
K 4 HOH C 10 810 59 HOH HOH . 
K 4 HOH C 11 811 60 HOH HOH . 
K 4 HOH C 12 812 61 HOH HOH . 
K 4 HOH C 13 813 67 HOH HOH . 
K 4 HOH C 14 814 69 HOH HOH . 
K 4 HOH C 15 815 71 HOH HOH . 
K 4 HOH C 16 816 74 HOH HOH . 
K 4 HOH C 17 817 80 HOH HOH . 
K 4 HOH C 18 818 84 HOH HOH . 
K 4 HOH C 19 819 85 HOH HOH . 
K 4 HOH C 20 820 86 HOH HOH . 
K 4 HOH C 21 821 92 HOH HOH . 
K 4 HOH C 22 822 94 HOH HOH . 
K 4 HOH C 23 823 95 HOH HOH . 
K 4 HOH C 24 824 96 HOH HOH . 
K 4 HOH C 25 825 102 HOH HOH . 
K 4 HOH C 26 826 108 HOH HOH . 
K 4 HOH C 27 827 113 HOH HOH . 
K 4 HOH C 28 828 117 HOH HOH . 
K 4 HOH C 29 829 118 HOH HOH . 
K 4 HOH C 30 830 119 HOH HOH . 
K 4 HOH C 31 831 121 HOH HOH . 
K 4 HOH C 32 832 124 HOH HOH . 
K 4 HOH C 33 833 129 HOH HOH . 
K 4 HOH C 34 834 130 HOH HOH . 
K 4 HOH C 35 835 132 HOH HOH . 
K 4 HOH C 36 836 136 HOH HOH . 
K 4 HOH C 37 837 140 HOH HOH . 
K 4 HOH C 38 838 142 HOH HOH . 
L 4 HOH D 1 701 6 HOH HOH . 
L 4 HOH D 2 702 9 HOH HOH . 
L 4 HOH D 3 703 15 HOH HOH . 
L 4 HOH D 4 704 23 HOH HOH . 
L 4 HOH D 5 705 24 HOH HOH . 
L 4 HOH D 6 706 25 HOH HOH . 
L 4 HOH D 7 707 29 HOH HOH . 
L 4 HOH D 8 708 30 HOH HOH . 
L 4 HOH D 9 709 37 HOH HOH . 
L 4 HOH D 10 710 39 HOH HOH . 
L 4 HOH D 11 711 41 HOH HOH . 
L 4 HOH D 12 712 52 HOH HOH . 
L 4 HOH D 13 713 55 HOH HOH . 
L 4 HOH D 14 714 57 HOH HOH . 
L 4 HOH D 15 715 62 HOH HOH . 
L 4 HOH D 16 716 63 HOH HOH . 
L 4 HOH D 17 717 64 HOH HOH . 
L 4 HOH D 18 718 65 HOH HOH . 
L 4 HOH D 19 719 66 HOH HOH . 
L 4 HOH D 20 720 72 HOH HOH . 
L 4 HOH D 21 721 76 HOH HOH . 
L 4 HOH D 22 722 77 HOH HOH . 
L 4 HOH D 23 723 79 HOH HOH . 
L 4 HOH D 24 724 82 HOH HOH . 
L 4 HOH D 25 725 83 HOH HOH . 
L 4 HOH D 26 726 87 HOH HOH . 
L 4 HOH D 27 727 90 HOH HOH . 
L 4 HOH D 28 728 91 HOH HOH . 
L 4 HOH D 29 729 93 HOH HOH . 
L 4 HOH D 30 730 98 HOH HOH . 
L 4 HOH D 31 731 99 HOH HOH . 
L 4 HOH D 32 732 100 HOH HOH . 
L 4 HOH D 33 733 103 HOH HOH . 
L 4 HOH D 34 734 105 HOH HOH . 
L 4 HOH D 35 735 106 HOH HOH . 
L 4 HOH D 36 736 112 HOH HOH . 
L 4 HOH D 37 737 123 HOH HOH . 
L 4 HOH D 38 738 128 HOH HOH . 
L 4 HOH D 39 739 133 HOH HOH . 
L 4 HOH D 40 740 146 HOH HOH . 
L 4 HOH D 41 741 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 G3P . . . G 3 -1.566 -0.737 25.096 1 47.59 ? O1 G3P 701 C 1 
HETATM 2 C C1 G3P . . . G 3 -2.239 -0.788 23.866 1 48.65 ? C1 G3P 701 C 1 
HETATM 3 C C2 G3P . . . G 3 -1.291 -0.307 22.84 1 49.83 ? C2 G3P 701 C 1 
HETATM 4 O O2 G3P . . . G 3 -0.165 -0.971 23.299 1 48.63 ? O2 G3P 701 C 1 
HETATM 5 C C3 G3P . . . G 3 -1.665 -0.749 21.446 1 52.54 ? C3 G3P 701 C 1 
HETATM 6 O O1P G3P . . . G 3 -1.647 0.352 20.557 1 56.72 ? O1P G3P 701 C 1 
HETATM 7 O O4P G3P . . . G 3 -1.657 -1.012 18.506 1 58.33 ? O4P G3P 701 C 1 
HETATM 8 O O2P G3P . . . G 3 -0.818 1.256 18.495 1 59.91 ? O2P G3P 701 C 1 
HETATM 9 O O3P G3P . . . G 3 -3.191 0.908 18.804 1 60.23 ? O3P G3P 701 C 1 
HETATM 10 P P G3P . . . G 3 -1.841 0.341 18.986 1 60.44 ? P G3P 701 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           10 
#