data_3WXK
#
_model_server_result.job_id            DmcXNglfi9pzcYIFm3lzEQ 
_model_server_result.datetime_utc      '2024-11-20 09:31:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wxk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    3WXK 
#
_exptl.entry_id    3WXK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.76 
_cell.angle_gamma         90 
_cell.entry_id            3WXK 
_cell.length_a            62.485 
_cell.length_b            122.139 
_cell.length_c            154.515 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WXK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,P,Q 1 1 
C,D,J,K,L,M,N,O,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3WXK 
_atom_sites.fract_transf_matrix[1][1]    0.016004 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000213 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008187 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006472 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 601 601 GOL GOL . 
F 2 GOL A 1 602 602 GOL GOL . 
G 2 GOL B 1 601 607 GOL GOL . 
H 3 HEZ B 1 602 903 HEZ HEZ . 
I 3 HEZ B 1 603 904 HEZ HEZ . 
J 2 GOL C 1 601 603 GOL GOL . 
K 2 GOL C 1 602 604 GOL GOL . 
L 3 HEZ C 1 603 901 HEZ HEZ . 
M 2 GOL D 1 601 605 GOL GOL . 
N 2 GOL D 1 602 606 GOL GOL . 
O 3 HEZ D 1 603 902 HEZ HEZ . 
P 4 HOH A 1 701 7 HOH HOH . 
P 4 HOH A 2 702 9 HOH HOH . 
P 4 HOH A 3 703 13 HOH HOH . 
P 4 HOH A 4 704 15 HOH HOH . 
P 4 HOH A 5 705 16 HOH HOH . 
P 4 HOH A 6 706 18 HOH HOH . 
P 4 HOH A 7 707 22 HOH HOH . 
P 4 HOH A 8 708 23 HOH HOH . 
P 4 HOH A 9 709 24 HOH HOH . 
P 4 HOH A 10 710 26 HOH HOH . 
P 4 HOH A 11 711 38 HOH HOH . 
P 4 HOH A 12 712 44 HOH HOH . 
P 4 HOH A 13 713 48 HOH HOH . 
P 4 HOH A 14 714 61 HOH HOH . 
P 4 HOH A 15 715 62 HOH HOH . 
P 4 HOH A 16 716 67 HOH HOH . 
P 4 HOH A 17 717 71 HOH HOH . 
P 4 HOH A 18 718 82 HOH HOH . 
P 4 HOH A 19 719 93 HOH HOH . 
P 4 HOH A 20 720 96 HOH HOH . 
P 4 HOH A 21 721 97 HOH HOH . 
P 4 HOH A 22 722 103 HOH HOH . 
P 4 HOH A 23 723 106 HOH HOH . 
P 4 HOH A 24 724 107 HOH HOH . 
P 4 HOH A 25 725 111 HOH HOH . 
P 4 HOH A 26 726 113 HOH HOH . 
P 4 HOH A 27 727 116 HOH HOH . 
P 4 HOH A 28 728 118 HOH HOH . 
P 4 HOH A 29 729 119 HOH HOH . 
P 4 HOH A 30 730 123 HOH HOH . 
P 4 HOH A 31 731 124 HOH HOH . 
P 4 HOH A 32 732 131 HOH HOH . 
P 4 HOH A 33 733 134 HOH HOH . 
P 4 HOH A 34 734 144 HOH HOH . 
P 4 HOH A 35 735 145 HOH HOH . 
P 4 HOH A 36 736 152 HOH HOH . 
P 4 HOH A 37 737 154 HOH HOH . 
P 4 HOH A 38 738 155 HOH HOH . 
P 4 HOH A 39 739 168 HOH HOH . 
P 4 HOH A 40 740 176 HOH HOH . 
P 4 HOH A 41 741 182 HOH HOH . 
P 4 HOH A 42 742 185 HOH HOH . 
P 4 HOH A 43 743 191 HOH HOH . 
P 4 HOH A 44 744 199 HOH HOH . 
P 4 HOH A 45 745 201 HOH HOH . 
P 4 HOH A 46 746 203 HOH HOH . 
P 4 HOH A 47 747 204 HOH HOH . 
P 4 HOH A 48 748 205 HOH HOH . 
P 4 HOH A 49 749 211 HOH HOH . 
P 4 HOH A 50 750 215 HOH HOH . 
P 4 HOH A 51 751 222 HOH HOH . 
P 4 HOH A 52 752 235 HOH HOH . 
Q 4 HOH B 1 701 10 HOH HOH . 
Q 4 HOH B 2 702 11 HOH HOH . 
Q 4 HOH B 3 703 14 HOH HOH . 
Q 4 HOH B 4 704 17 HOH HOH . 
Q 4 HOH B 5 705 31 HOH HOH . 
Q 4 HOH B 6 706 33 HOH HOH . 
Q 4 HOH B 7 707 34 HOH HOH . 
Q 4 HOH B 8 708 41 HOH HOH . 
Q 4 HOH B 9 709 43 HOH HOH . 
Q 4 HOH B 10 710 45 HOH HOH . 
Q 4 HOH B 11 711 46 HOH HOH . 
Q 4 HOH B 12 712 49 HOH HOH . 
Q 4 HOH B 13 713 56 HOH HOH . 
Q 4 HOH B 14 714 58 HOH HOH . 
Q 4 HOH B 15 715 69 HOH HOH . 
Q 4 HOH B 16 716 78 HOH HOH . 
Q 4 HOH B 17 717 84 HOH HOH . 
Q 4 HOH B 18 718 86 HOH HOH . 
Q 4 HOH B 19 719 88 HOH HOH . 
Q 4 HOH B 20 720 101 HOH HOH . 
Q 4 HOH B 21 721 114 HOH HOH . 
Q 4 HOH B 22 722 115 HOH HOH . 
Q 4 HOH B 23 723 125 HOH HOH . 
Q 4 HOH B 24 724 126 HOH HOH . 
Q 4 HOH B 25 725 127 HOH HOH . 
Q 4 HOH B 26 726 128 HOH HOH . 
Q 4 HOH B 27 727 133 HOH HOH . 
Q 4 HOH B 28 728 142 HOH HOH . 
Q 4 HOH B 29 729 143 HOH HOH . 
Q 4 HOH B 30 730 146 HOH HOH . 
Q 4 HOH B 31 731 149 HOH HOH . 
Q 4 HOH B 32 732 151 HOH HOH . 
Q 4 HOH B 33 733 158 HOH HOH . 
Q 4 HOH B 34 734 162 HOH HOH . 
Q 4 HOH B 35 735 165 HOH HOH . 
Q 4 HOH B 36 736 167 HOH HOH . 
Q 4 HOH B 37 737 178 HOH HOH . 
Q 4 HOH B 38 738 183 HOH HOH . 
Q 4 HOH B 39 739 189 HOH HOH . 
Q 4 HOH B 40 740 198 HOH HOH . 
Q 4 HOH B 41 741 202 HOH HOH . 
Q 4 HOH B 42 742 206 HOH HOH . 
Q 4 HOH B 43 743 212 HOH HOH . 
Q 4 HOH B 44 744 217 HOH HOH . 
Q 4 HOH B 45 745 224 HOH HOH . 
Q 4 HOH B 46 746 225 HOH HOH . 
Q 4 HOH B 47 747 226 HOH HOH . 
Q 4 HOH B 48 748 228 HOH HOH . 
Q 4 HOH B 49 749 229 HOH HOH . 
Q 4 HOH B 50 750 232 HOH HOH . 
Q 4 HOH B 51 751 233 HOH HOH . 
Q 4 HOH B 52 752 236 HOH HOH . 
R 4 HOH C 1 701 4 HOH HOH . 
R 4 HOH C 2 702 5 HOH HOH . 
R 4 HOH C 3 703 8 HOH HOH . 
R 4 HOH C 4 704 19 HOH HOH . 
R 4 HOH C 5 705 20 HOH HOH . 
R 4 HOH C 6 706 21 HOH HOH . 
R 4 HOH C 7 707 29 HOH HOH . 
R 4 HOH C 8 708 35 HOH HOH . 
R 4 HOH C 9 709 36 HOH HOH . 
R 4 HOH C 10 710 53 HOH HOH . 
R 4 HOH C 11 711 54 HOH HOH . 
R 4 HOH C 12 712 55 HOH HOH . 
R 4 HOH C 13 713 57 HOH HOH . 
R 4 HOH C 14 714 65 HOH HOH . 
R 4 HOH C 15 715 66 HOH HOH . 
R 4 HOH C 16 716 68 HOH HOH . 
R 4 HOH C 17 717 74 HOH HOH . 
R 4 HOH C 18 718 77 HOH HOH . 
R 4 HOH C 19 719 83 HOH HOH . 
R 4 HOH C 20 720 87 HOH HOH . 
R 4 HOH C 21 721 91 HOH HOH . 
R 4 HOH C 22 722 95 HOH HOH . 
R 4 HOH C 23 723 99 HOH HOH . 
R 4 HOH C 24 724 100 HOH HOH . 
R 4 HOH C 25 725 104 HOH HOH . 
R 4 HOH C 26 726 121 HOH HOH . 
R 4 HOH C 27 727 129 HOH HOH . 
R 4 HOH C 28 728 132 HOH HOH . 
R 4 HOH C 29 729 136 HOH HOH . 
R 4 HOH C 30 730 137 HOH HOH . 
R 4 HOH C 31 731 141 HOH HOH . 
R 4 HOH C 32 732 150 HOH HOH . 
R 4 HOH C 33 733 159 HOH HOH . 
R 4 HOH C 34 734 160 HOH HOH . 
R 4 HOH C 35 735 170 HOH HOH . 
R 4 HOH C 36 736 171 HOH HOH . 
R 4 HOH C 37 737 173 HOH HOH . 
R 4 HOH C 38 738 174 HOH HOH . 
R 4 HOH C 39 739 175 HOH HOH . 
R 4 HOH C 40 740 186 HOH HOH . 
R 4 HOH C 41 741 190 HOH HOH . 
R 4 HOH C 42 742 192 HOH HOH . 
R 4 HOH C 43 743 193 HOH HOH . 
R 4 HOH C 44 744 194 HOH HOH . 
R 4 HOH C 45 745 196 HOH HOH . 
R 4 HOH C 46 746 197 HOH HOH . 
R 4 HOH C 47 747 200 HOH HOH . 
R 4 HOH C 48 748 207 HOH HOH . 
R 4 HOH C 49 749 210 HOH HOH . 
R 4 HOH C 50 750 230 HOH HOH . 
S 4 HOH D 1 701 1 HOH HOH . 
S 4 HOH D 2 702 6 HOH HOH . 
S 4 HOH D 3 703 27 HOH HOH . 
S 4 HOH D 4 704 28 HOH HOH . 
S 4 HOH D 5 705 30 HOH HOH . 
S 4 HOH D 6 706 32 HOH HOH . 
S 4 HOH D 7 707 39 HOH HOH . 
S 4 HOH D 8 708 40 HOH HOH . 
S 4 HOH D 9 709 50 HOH HOH . 
S 4 HOH D 10 710 60 HOH HOH . 
S 4 HOH D 11 711 64 HOH HOH . 
S 4 HOH D 12 712 70 HOH HOH . 
S 4 HOH D 13 713 75 HOH HOH . 
S 4 HOH D 14 714 79 HOH HOH . 
S 4 HOH D 15 715 80 HOH HOH . 
S 4 HOH D 16 716 81 HOH HOH . 
S 4 HOH D 17 717 89 HOH HOH . 
S 4 HOH D 18 718 90 HOH HOH . 
S 4 HOH D 19 719 92 HOH HOH . 
S 4 HOH D 20 720 94 HOH HOH . 
S 4 HOH D 21 721 98 HOH HOH . 
S 4 HOH D 22 722 102 HOH HOH . 
S 4 HOH D 23 723 108 HOH HOH . 
S 4 HOH D 24 724 109 HOH HOH . 
S 4 HOH D 25 725 110 HOH HOH . 
S 4 HOH D 26 726 112 HOH HOH . 
S 4 HOH D 27 727 117 HOH HOH . 
S 4 HOH D 28 728 130 HOH HOH . 
S 4 HOH D 29 729 135 HOH HOH . 
S 4 HOH D 30 730 138 HOH HOH . 
S 4 HOH D 31 731 139 HOH HOH . 
S 4 HOH D 32 732 140 HOH HOH . 
S 4 HOH D 33 733 147 HOH HOH . 
S 4 HOH D 34 734 148 HOH HOH . 
S 4 HOH D 35 735 153 HOH HOH . 
S 4 HOH D 36 736 163 HOH HOH . 
S 4 HOH D 37 737 166 HOH HOH . 
S 4 HOH D 38 738 169 HOH HOH . 
S 4 HOH D 39 739 177 HOH HOH . 
S 4 HOH D 40 740 184 HOH HOH . 
S 4 HOH D 41 741 195 HOH HOH . 
S 4 HOH D 42 742 208 HOH HOH . 
S 4 HOH D 43 743 213 HOH HOH . 
S 4 HOH D 44 744 214 HOH HOH . 
S 4 HOH D 45 745 216 HOH HOH . 
S 4 HOH D 46 746 220 HOH HOH . 
S 4 HOH D 47 747 223 HOH HOH . 
S 4 HOH D 48 748 231 HOH HOH . 
S 4 HOH D 49 749 234 HOH HOH . 
S 4 HOH D 50 750 237 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 2 60.497 -51.521 16.136 1 40.64 ? C1 GOL 601 D 1 
HETATM 2 O O1 GOL . . . M 2 61.636 -51.25 15.32 1 38.26 ? O1 GOL 601 D 1 
HETATM 3 C C2 GOL . . . M 2 60.942 -52.038 17.502 1 40.07 ? C2 GOL 601 D 1 
HETATM 4 O O2 GOL . . . M 2 61.594 -53.286 17.358 1 41.1 ? O2 GOL 601 D 1 
HETATM 5 C C3 GOL . . . M 2 59.715 -52.355 18.36 1 43.37 ? C3 GOL 601 D 1 
HETATM 6 O O3 GOL . . . M 2 60.151 -52.766 19.653 1 45.08 ? O3 GOL 601 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           447 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#