data_3WY6 # _model_server_result.job_id eRSHw17o01O0OlVLf7m7oA _model_server_result.datetime_utc '2024-12-11 00:47:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3WY6 # _exptl.entry_id 3WY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WY6 _cell.length_a 58.03 _cell.length_b 118.865 _cell.length_c 46.873 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC D 3 BGC 2 n B BGC 2 B 2 BGC D 2 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A OD1 ASP 68 A ASP 68 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A OD1 ASP 70 A ASP 70 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A OD1 ASP 72 A ASP 72 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 A O ASN 74 A ASN 74 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A OE2 GLU 76 A GLU 76 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 A OD1 ASN 132 A ASN 132 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 A O LYS 133 A LYS 133 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc8 A O ASN 136 A ASN 136 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc9 A O ASN 138 A ASN 138 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 A OD2 ASP 142 A ASP 142 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc11 D CA CA . A CA 402 1_555 R O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WY6 _atom_sites.fract_transf_matrix[1][1] 0.017232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 401 1 CA CA . D 3 CA A 1 402 2 CA CA . E 4 NHE A 1 403 1 NHE NHE . F 4 NHE A 1 404 2 NHE NHE . G 4 NHE A 1 405 3 NHE NHE . H 4 NHE A 1 406 4 NHE NHE . I 5 BGC A 1 407 1 BGC BGC . J 6 GOL A 1 410 2 GOL GOL . K 6 GOL A 1 411 6 GOL GOL . L 6 GOL A 1 412 7 GOL GOL . M 6 GOL A 1 413 9 GOL GOL . N 6 GOL A 1 414 10 GOL GOL . O 6 GOL A 1 415 11 GOL GOL . P 6 GOL A 1 416 12 GOL GOL . Q 6 GOL A 1 417 13 GOL GOL . R 7 HOH A 1 501 1 HOH HOH . R 7 HOH A 2 502 2 HOH HOH . R 7 HOH A 3 503 3 HOH HOH . R 7 HOH A 4 504 4 HOH HOH . R 7 HOH A 5 505 5 HOH HOH . R 7 HOH A 6 506 6 HOH HOH . R 7 HOH A 7 507 7 HOH HOH . R 7 HOH A 8 508 8 HOH HOH . R 7 HOH A 9 509 9 HOH HOH . R 7 HOH A 10 510 10 HOH HOH . R 7 HOH A 11 511 11 HOH HOH . R 7 HOH A 12 512 12 HOH HOH . R 7 HOH A 13 513 13 HOH HOH . R 7 HOH A 14 514 14 HOH HOH . R 7 HOH A 15 515 15 HOH HOH . R 7 HOH A 16 516 16 HOH HOH . R 7 HOH A 17 517 17 HOH HOH . R 7 HOH A 18 518 18 HOH HOH . R 7 HOH A 19 519 19 HOH HOH . R 7 HOH A 20 520 20 HOH HOH . R 7 HOH A 21 521 21 HOH HOH . R 7 HOH A 22 522 22 HOH HOH . R 7 HOH A 23 523 23 HOH HOH . R 7 HOH A 24 524 24 HOH HOH . R 7 HOH A 25 525 25 HOH HOH . R 7 HOH A 26 526 26 HOH HOH . R 7 HOH A 27 527 27 HOH HOH . R 7 HOH A 28 528 28 HOH HOH . R 7 HOH A 29 529 29 HOH HOH . R 7 HOH A 30 530 30 HOH HOH . R 7 HOH A 31 531 31 HOH HOH . R 7 HOH A 32 532 32 HOH HOH . R 7 HOH A 33 533 33 HOH HOH . R 7 HOH A 34 534 34 HOH HOH . R 7 HOH A 35 535 35 HOH HOH . R 7 HOH A 36 536 36 HOH HOH . R 7 HOH A 37 537 37 HOH HOH . R 7 HOH A 38 538 38 HOH HOH . R 7 HOH A 39 539 39 HOH HOH . R 7 HOH A 40 540 40 HOH HOH . R 7 HOH A 41 541 41 HOH HOH . R 7 HOH A 42 542 42 HOH HOH . R 7 HOH A 43 543 43 HOH HOH . R 7 HOH A 44 544 44 HOH HOH . R 7 HOH A 45 545 45 HOH HOH . R 7 HOH A 46 546 46 HOH HOH . R 7 HOH A 47 547 47 HOH HOH . R 7 HOH A 48 548 48 HOH HOH . R 7 HOH A 49 549 49 HOH HOH . R 7 HOH A 50 550 50 HOH HOH . R 7 HOH A 51 551 51 HOH HOH . R 7 HOH A 52 552 52 HOH HOH . R 7 HOH A 53 553 53 HOH HOH . R 7 HOH A 54 554 54 HOH HOH . R 7 HOH A 55 555 55 HOH HOH . R 7 HOH A 56 556 56 HOH HOH . R 7 HOH A 57 557 57 HOH HOH . R 7 HOH A 58 558 58 HOH HOH . R 7 HOH A 59 559 59 HOH HOH . R 7 HOH A 60 560 60 HOH HOH . R 7 HOH A 61 561 61 HOH HOH . R 7 HOH A 62 562 62 HOH HOH . R 7 HOH A 63 563 63 HOH HOH . R 7 HOH A 64 564 64 HOH HOH . R 7 HOH A 65 565 65 HOH HOH . R 7 HOH A 66 566 66 HOH HOH . R 7 HOH A 67 567 67 HOH HOH . R 7 HOH A 68 568 68 HOH HOH . R 7 HOH A 69 569 69 HOH HOH . R 7 HOH A 70 570 70 HOH HOH . R 7 HOH A 71 571 71 HOH HOH . R 7 HOH A 72 572 72 HOH HOH . R 7 HOH A 73 573 73 HOH HOH . R 7 HOH A 74 574 74 HOH HOH . R 7 HOH A 75 575 75 HOH HOH . R 7 HOH A 76 576 76 HOH HOH . R 7 HOH A 77 577 77 HOH HOH . R 7 HOH A 78 578 78 HOH HOH . R 7 HOH A 79 579 79 HOH HOH . R 7 HOH A 80 580 80 HOH HOH . R 7 HOH A 81 581 81 HOH HOH . R 7 HOH A 82 582 82 HOH HOH . R 7 HOH A 83 583 83 HOH HOH . R 7 HOH A 84 584 84 HOH HOH . R 7 HOH A 85 585 85 HOH HOH . R 7 HOH A 86 586 86 HOH HOH . R 7 HOH A 87 587 87 HOH HOH . R 7 HOH A 88 588 88 HOH HOH . R 7 HOH A 89 589 89 HOH HOH . R 7 HOH A 90 590 90 HOH HOH . R 7 HOH A 91 591 91 HOH HOH . R 7 HOH A 92 592 92 HOH HOH . R 7 HOH A 93 593 93 HOH HOH . R 7 HOH A 94 594 94 HOH HOH . R 7 HOH A 95 595 95 HOH HOH . R 7 HOH A 96 596 96 HOH HOH . R 7 HOH A 97 597 97 HOH HOH . R 7 HOH A 98 598 98 HOH HOH . R 7 HOH A 99 599 99 HOH HOH . R 7 HOH A 100 600 100 HOH HOH . R 7 HOH A 101 601 101 HOH HOH . R 7 HOH A 102 602 102 HOH HOH . R 7 HOH A 103 603 103 HOH HOH . R 7 HOH A 104 604 104 HOH HOH . R 7 HOH A 105 605 105 HOH HOH . R 7 HOH A 106 606 106 HOH HOH . R 7 HOH A 107 607 107 HOH HOH . R 7 HOH A 108 608 108 HOH HOH . R 7 HOH A 109 609 109 HOH HOH . R 7 HOH A 110 610 110 HOH HOH . R 7 HOH A 111 611 111 HOH HOH . R 7 HOH A 112 612 112 HOH HOH . R 7 HOH A 113 613 113 HOH HOH . R 7 HOH A 114 614 114 HOH HOH . R 7 HOH A 115 615 115 HOH HOH . R 7 HOH A 116 616 116 HOH HOH . R 7 HOH A 117 617 117 HOH HOH . R 7 HOH A 118 618 118 HOH HOH . R 7 HOH A 119 619 119 HOH HOH . R 7 HOH A 120 620 120 HOH HOH . R 7 HOH A 121 621 121 HOH HOH . R 7 HOH A 122 622 122 HOH HOH . R 7 HOH A 123 623 123 HOH HOH . R 7 HOH A 124 624 124 HOH HOH . R 7 HOH A 125 625 125 HOH HOH . R 7 HOH A 126 626 126 HOH HOH . R 7 HOH A 127 627 127 HOH HOH . R 7 HOH A 128 628 128 HOH HOH . R 7 HOH A 129 629 129 HOH HOH . R 7 HOH A 130 630 130 HOH HOH . R 7 HOH A 131 631 131 HOH HOH . R 7 HOH A 132 632 132 HOH HOH . R 7 HOH A 133 633 133 HOH HOH . R 7 HOH A 134 634 134 HOH HOH . R 7 HOH A 135 635 135 HOH HOH . R 7 HOH A 136 636 136 HOH HOH . R 7 HOH A 137 637 137 HOH HOH . R 7 HOH A 138 638 138 HOH HOH . R 7 HOH A 139 639 139 HOH HOH . R 7 HOH A 140 640 140 HOH HOH . R 7 HOH A 141 641 141 HOH HOH . R 7 HOH A 142 642 142 HOH HOH . R 7 HOH A 143 643 143 HOH HOH . R 7 HOH A 144 644 144 HOH HOH . R 7 HOH A 145 645 145 HOH HOH . R 7 HOH A 146 646 146 HOH HOH . R 7 HOH A 147 647 147 HOH HOH . R 7 HOH A 148 648 148 HOH HOH . R 7 HOH A 149 649 149 HOH HOH . R 7 HOH A 150 650 150 HOH HOH . R 7 HOH A 151 651 151 HOH HOH . R 7 HOH A 152 652 152 HOH HOH . R 7 HOH A 153 653 153 HOH HOH . R 7 HOH A 154 654 154 HOH HOH . R 7 HOH A 155 655 155 HOH HOH . R 7 HOH A 156 656 156 HOH HOH . R 7 HOH A 157 657 157 HOH HOH . R 7 HOH A 158 658 158 HOH HOH . R 7 HOH A 159 659 159 HOH HOH . R 7 HOH A 160 660 160 HOH HOH . R 7 HOH A 161 661 161 HOH HOH . R 7 HOH A 162 662 162 HOH HOH . R 7 HOH A 163 663 163 HOH HOH . R 7 HOH A 164 664 164 HOH HOH . R 7 HOH A 165 665 165 HOH HOH . R 7 HOH A 166 666 166 HOH HOH . R 7 HOH A 167 667 167 HOH HOH . R 7 HOH A 168 668 168 HOH HOH . R 7 HOH A 169 669 169 HOH HOH . R 7 HOH A 170 670 170 HOH HOH . R 7 HOH A 171 671 171 HOH HOH . R 7 HOH A 172 672 172 HOH HOH . R 7 HOH A 173 673 173 HOH HOH . R 7 HOH A 174 674 174 HOH HOH . R 7 HOH A 175 675 175 HOH HOH . R 7 HOH A 176 676 176 HOH HOH . R 7 HOH A 177 677 177 HOH HOH . R 7 HOH A 178 678 178 HOH HOH . R 7 HOH A 179 679 179 HOH HOH . R 7 HOH A 180 680 180 HOH HOH . R 7 HOH A 181 681 181 HOH HOH . R 7 HOH A 182 682 182 HOH HOH . R 7 HOH A 183 683 183 HOH HOH . R 7 HOH A 184 684 184 HOH HOH . R 7 HOH A 185 685 185 HOH HOH . R 7 HOH A 186 686 186 HOH HOH . R 7 HOH A 187 687 187 HOH HOH . R 7 HOH A 188 688 188 HOH HOH . R 7 HOH A 189 689 189 HOH HOH . R 7 HOH A 190 690 190 HOH HOH . R 7 HOH A 191 691 191 HOH HOH . R 7 HOH A 192 692 192 HOH HOH . R 7 HOH A 193 693 193 HOH HOH . R 7 HOH A 194 694 194 HOH HOH . R 7 HOH A 195 695 195 HOH HOH . R 7 HOH A 196 696 196 HOH HOH . R 7 HOH A 197 697 197 HOH HOH . R 7 HOH A 198 698 198 HOH HOH . R 7 HOH A 199 699 199 HOH HOH . R 7 HOH A 200 700 200 HOH HOH . R 7 HOH A 201 701 201 HOH HOH . R 7 HOH A 202 702 202 HOH HOH . R 7 HOH A 203 703 203 HOH HOH . R 7 HOH A 204 704 204 HOH HOH . R 7 HOH A 205 705 205 HOH HOH . R 7 HOH A 206 706 206 HOH HOH . R 7 HOH A 207 707 207 HOH HOH . R 7 HOH A 208 708 208 HOH HOH . R 7 HOH A 209 709 209 HOH HOH . R 7 HOH A 210 710 210 HOH HOH . R 7 HOH A 211 711 211 HOH HOH . R 7 HOH A 212 712 212 HOH HOH . R 7 HOH A 213 713 213 HOH HOH . R 7 HOH A 214 714 214 HOH HOH . R 7 HOH A 215 715 215 HOH HOH . R 7 HOH A 216 716 216 HOH HOH . R 7 HOH A 217 717 217 HOH HOH . R 7 HOH A 218 718 218 HOH HOH . R 7 HOH A 219 719 219 HOH HOH . R 7 HOH A 220 720 220 HOH HOH . R 7 HOH A 221 721 221 HOH HOH . R 7 HOH A 222 722 222 HOH HOH . R 7 HOH A 223 723 223 HOH HOH . R 7 HOH A 224 724 224 HOH HOH . R 7 HOH A 225 725 225 HOH HOH . R 7 HOH A 226 726 226 HOH HOH . R 7 HOH A 227 727 227 HOH HOH . R 7 HOH A 228 728 228 HOH HOH . R 7 HOH A 229 729 229 HOH HOH . R 7 HOH A 230 730 230 HOH HOH . R 7 HOH A 231 731 231 HOH HOH . R 7 HOH A 232 732 232 HOH HOH . R 7 HOH A 233 733 233 HOH HOH . R 7 HOH A 234 734 234 HOH HOH . R 7 HOH A 235 735 235 HOH HOH . R 7 HOH A 236 736 236 HOH HOH . R 7 HOH A 237 737 237 HOH HOH . R 7 HOH A 238 738 238 HOH HOH . R 7 HOH A 239 739 239 HOH HOH . R 7 HOH A 240 740 240 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 41.181 _atom_site.Cartn_y 6.512 _atom_site.Cartn_z 20.934 _atom_site.occupancy 0.87 _atom_site.B_iso_or_equiv 14.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #