data_3WYE
#
_model_server_result.job_id            2vY82G4lO9SQcgrULqAOtA 
_model_server_result.datetime_utc      '2025-03-25 16:17:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wye 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3WYE 
#
_exptl.entry_id    3WYE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WYE 
_cell.length_a            81.244 
_cell.length_b            134.617 
_cell.length_c            87.794 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WYE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     3WYE 
_atom_sites.fract_transf_matrix[1][1]    0.012309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 301 1 NAD NAD . 
D 2 NAD B 1 301 1 NAD NAD . 
E 3 HOH A 1 401 2 HOH HOH . 
E 3 HOH A 2 402 3 HOH HOH . 
E 3 HOH A 3 403 4 HOH HOH . 
E 3 HOH A 4 404 5 HOH HOH . 
E 3 HOH A 5 405 11 HOH HOH . 
E 3 HOH A 6 406 13 HOH HOH . 
E 3 HOH A 7 407 14 HOH HOH . 
E 3 HOH A 8 408 15 HOH HOH . 
E 3 HOH A 9 409 16 HOH HOH . 
E 3 HOH A 10 410 17 HOH HOH . 
E 3 HOH A 11 411 18 HOH HOH . 
E 3 HOH A 12 412 19 HOH HOH . 
E 3 HOH A 13 413 20 HOH HOH . 
E 3 HOH A 14 414 21 HOH HOH . 
E 3 HOH A 15 415 23 HOH HOH . 
E 3 HOH A 16 416 26 HOH HOH . 
E 3 HOH A 17 417 27 HOH HOH . 
E 3 HOH A 18 418 29 HOH HOH . 
E 3 HOH A 19 419 30 HOH HOH . 
E 3 HOH A 20 420 32 HOH HOH . 
E 3 HOH A 21 421 35 HOH HOH . 
E 3 HOH A 22 422 37 HOH HOH . 
E 3 HOH A 23 423 38 HOH HOH . 
E 3 HOH A 24 424 39 HOH HOH . 
E 3 HOH A 25 425 40 HOH HOH . 
E 3 HOH A 26 426 41 HOH HOH . 
E 3 HOH A 27 427 42 HOH HOH . 
E 3 HOH A 28 428 44 HOH HOH . 
E 3 HOH A 29 429 45 HOH HOH . 
E 3 HOH A 30 430 46 HOH HOH . 
E 3 HOH A 31 431 47 HOH HOH . 
E 3 HOH A 32 432 48 HOH HOH . 
E 3 HOH A 33 433 49 HOH HOH . 
E 3 HOH A 34 434 50 HOH HOH . 
E 3 HOH A 35 435 51 HOH HOH . 
E 3 HOH A 36 436 54 HOH HOH . 
E 3 HOH A 37 437 55 HOH HOH . 
E 3 HOH A 38 438 57 HOH HOH . 
E 3 HOH A 39 439 58 HOH HOH . 
E 3 HOH A 40 440 59 HOH HOH . 
E 3 HOH A 41 441 61 HOH HOH . 
E 3 HOH A 42 442 62 HOH HOH . 
E 3 HOH A 43 443 63 HOH HOH . 
E 3 HOH A 44 444 65 HOH HOH . 
E 3 HOH A 45 445 67 HOH HOH . 
E 3 HOH A 46 446 68 HOH HOH . 
E 3 HOH A 47 447 70 HOH HOH . 
E 3 HOH A 48 448 71 HOH HOH . 
E 3 HOH A 49 449 74 HOH HOH . 
E 3 HOH A 50 450 75 HOH HOH . 
E 3 HOH A 51 451 76 HOH HOH . 
E 3 HOH A 52 452 77 HOH HOH . 
E 3 HOH A 53 453 80 HOH HOH . 
E 3 HOH A 54 454 81 HOH HOH . 
E 3 HOH A 55 455 82 HOH HOH . 
E 3 HOH A 56 456 83 HOH HOH . 
E 3 HOH A 57 457 87 HOH HOH . 
E 3 HOH A 58 458 88 HOH HOH . 
E 3 HOH A 59 459 89 HOH HOH . 
E 3 HOH A 60 460 90 HOH HOH . 
E 3 HOH A 61 461 91 HOH HOH . 
E 3 HOH A 62 462 98 HOH HOH . 
E 3 HOH A 63 463 99 HOH HOH . 
E 3 HOH A 64 464 100 HOH HOH . 
E 3 HOH A 65 465 101 HOH HOH . 
E 3 HOH A 66 466 102 HOH HOH . 
E 3 HOH A 67 467 108 HOH HOH . 
E 3 HOH A 68 468 111 HOH HOH . 
E 3 HOH A 69 469 118 HOH HOH . 
E 3 HOH A 70 470 119 HOH HOH . 
E 3 HOH A 71 471 120 HOH HOH . 
E 3 HOH A 72 472 121 HOH HOH . 
E 3 HOH A 73 473 123 HOH HOH . 
E 3 HOH A 74 474 125 HOH HOH . 
E 3 HOH A 75 475 126 HOH HOH . 
E 3 HOH A 76 476 127 HOH HOH . 
E 3 HOH A 77 477 128 HOH HOH . 
E 3 HOH A 78 478 130 HOH HOH . 
E 3 HOH A 79 479 132 HOH HOH . 
E 3 HOH A 80 480 133 HOH HOH . 
E 3 HOH A 81 481 134 HOH HOH . 
E 3 HOH A 82 482 135 HOH HOH . 
E 3 HOH A 83 483 136 HOH HOH . 
E 3 HOH A 84 484 137 HOH HOH . 
F 3 HOH B 1 401 1 HOH HOH . 
F 3 HOH B 2 402 6 HOH HOH . 
F 3 HOH B 3 403 7 HOH HOH . 
F 3 HOH B 4 404 8 HOH HOH . 
F 3 HOH B 5 405 9 HOH HOH . 
F 3 HOH B 6 406 10 HOH HOH . 
F 3 HOH B 7 407 12 HOH HOH . 
F 3 HOH B 8 408 22 HOH HOH . 
F 3 HOH B 9 409 24 HOH HOH . 
F 3 HOH B 10 410 25 HOH HOH . 
F 3 HOH B 11 411 28 HOH HOH . 
F 3 HOH B 12 412 31 HOH HOH . 
F 3 HOH B 13 413 33 HOH HOH . 
F 3 HOH B 14 414 34 HOH HOH . 
F 3 HOH B 15 415 36 HOH HOH . 
F 3 HOH B 16 416 43 HOH HOH . 
F 3 HOH B 17 417 52 HOH HOH . 
F 3 HOH B 18 418 53 HOH HOH . 
F 3 HOH B 19 419 56 HOH HOH . 
F 3 HOH B 20 420 60 HOH HOH . 
F 3 HOH B 21 421 64 HOH HOH . 
F 3 HOH B 22 422 66 HOH HOH . 
F 3 HOH B 23 423 69 HOH HOH . 
F 3 HOH B 24 424 72 HOH HOH . 
F 3 HOH B 25 425 73 HOH HOH . 
F 3 HOH B 26 426 78 HOH HOH . 
F 3 HOH B 27 427 79 HOH HOH . 
F 3 HOH B 28 428 85 HOH HOH . 
F 3 HOH B 29 429 86 HOH HOH . 
F 3 HOH B 30 430 92 HOH HOH . 
F 3 HOH B 31 431 93 HOH HOH . 
F 3 HOH B 32 432 94 HOH HOH . 
F 3 HOH B 33 433 95 HOH HOH . 
F 3 HOH B 34 434 96 HOH HOH . 
F 3 HOH B 35 435 97 HOH HOH . 
F 3 HOH B 36 436 103 HOH HOH . 
F 3 HOH B 37 437 104 HOH HOH . 
F 3 HOH B 38 438 105 HOH HOH . 
F 3 HOH B 39 439 106 HOH HOH . 
F 3 HOH B 40 440 107 HOH HOH . 
F 3 HOH B 41 441 109 HOH HOH . 
F 3 HOH B 42 442 110 HOH HOH . 
F 3 HOH B 43 443 112 HOH HOH . 
F 3 HOH B 44 444 113 HOH HOH . 
F 3 HOH B 45 445 114 HOH HOH . 
F 3 HOH B 46 446 115 HOH HOH . 
F 3 HOH B 47 447 116 HOH HOH . 
F 3 HOH B 48 448 117 HOH HOH . 
F 3 HOH B 49 449 122 HOH HOH . 
F 3 HOH B 50 450 124 HOH HOH . 
F 3 HOH B 51 451 129 HOH HOH . 
F 3 HOH B 52 452 131 HOH HOH . 
F 3 HOH B 53 453 138 HOH HOH . 
F 3 HOH B 54 454 139 HOH HOH . 
F 3 HOH B 55 455 140 HOH HOH . 
F 3 HOH B 56 456 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 2 3.942 19.811 -10.988 1 24.5 ? PA NAD 301 B 1 
HETATM 2 O O1A NAD . . . D 2 2.996 19.268 -12.034 1 26.74 ? O1A NAD 301 B 1 
HETATM 3 O O2A NAD . . . D 2 4.992 20.829 -11.366 1 25.95 ? O2A NAD 301 B 1 
HETATM 4 O O5B NAD . . . D 2 3.054 20.428 -9.803 1 24.23 ? O5B NAD 301 B 1 
HETATM 5 C C5B NAD . . . D 2 3.684 21.148 -8.754 1 21.92 ? C5B NAD 301 B 1 
HETATM 6 C C4B NAD . . . D 2 2.614 21.858 -7.947 1 22.24 ? C4B NAD 301 B 1 
HETATM 7 O O4B NAD . . . D 2 3.223 22.378 -6.763 1 22.56 ? O4B NAD 301 B 1 
HETATM 8 C C3B NAD . . . D 2 2.049 23.03 -8.735 1 22.24 ? C3B NAD 301 B 1 
HETATM 9 O O3B NAD . . . D 2 0.63 23.108 -8.547 1 26.73 ? O3B NAD 301 B 1 
HETATM 10 C C2B NAD . . . D 2 2.735 24.231 -8.12 1 22.33 ? C2B NAD 301 B 1 
HETATM 11 O O2B NAD . . . D 2 1.932 25.414 -8.176 1 24.03 ? O2B NAD 301 B 1 
HETATM 12 C C1B NAD . . . D 2 2.972 23.778 -6.692 1 18.93 ? C1B NAD 301 B 1 
HETATM 13 N N9A NAD . . . D 2 4.133 24.47 -6.097 1 24.58 ? N9A NAD 301 B 1 
HETATM 14 C C8A NAD . . . D 2 5.365 24.608 -6.627 1 24.36 ? C8A NAD 301 B 1 
HETATM 15 N N7A NAD . . . D 2 6.169 25.314 -5.787 1 23.59 ? N7A NAD 301 B 1 
HETATM 16 C C5A NAD . . . D 2 5.431 25.635 -4.703 1 22.69 ? C5A NAD 301 B 1 
HETATM 17 C C6A NAD . . . D 2 5.647 26.37 -3.438 1 21.21 ? C6A NAD 301 B 1 
HETATM 18 N N6A NAD . . . D 2 6.853 26.917 -3.158 1 23.25 ? N6A NAD 301 B 1 
HETATM 19 N N1A NAD . . . D 2 4.607 26.465 -2.578 1 20.05 ? N1A NAD 301 B 1 
HETATM 20 C C2A NAD . . . D 2 3.405 25.922 -2.848 1 21.35 ? C2A NAD 301 B 1 
HETATM 21 N N3A NAD . . . D 2 3.132 25.248 -3.977 1 21.33 ? N3A NAD 301 B 1 
HETATM 22 C C4A NAD . . . D 2 4.092 25.078 -4.919 1 23.83 ? C4A NAD 301 B 1 
HETATM 23 O O3 NAD . . . D 2 4.699 18.643 -10.186 1 25.74 ? O3 NAD 301 B 1 
HETATM 24 P PN NAD . . . D 2 4.289 17.089 -10.137 1 24.76 ? PN NAD 301 B 1 
HETATM 25 O O1N NAD . . . D 2 4.919 16.412 -11.332 1 30.29 ? O1N NAD 301 B 1 
HETATM 26 O O2N NAD . . . D 2 2.803 16.95 -9.866 1 25.19 ? O2N NAD 301 B 1 
HETATM 27 O O5D NAD . . . D 2 5.151 16.666 -8.843 1 25.73 ? O5D NAD 301 B 1 
HETATM 28 C C5D NAD . . . D 2 4.597 16.521 -7.538 1 24.6 ? C5D NAD 301 B 1 
HETATM 29 C C4D NAD . . . D 2 5.684 15.976 -6.62 1 20.6 ? C4D NAD 301 B 1 
HETATM 30 O O4D NAD . . . D 2 6.096 14.687 -7.09 1 22.87 ? O4D NAD 301 B 1 
HETATM 31 C C3D NAD . . . D 2 6.922 16.863 -6.635 1 19.12 ? C3D NAD 301 B 1 
HETATM 32 O O3D NAD . . . D 2 7.489 16.923 -5.322 1 20.56 ? O3D NAD 301 B 1 
HETATM 33 C C2D NAD . . . D 2 7.897 16.114 -7.506 1 20.95 ? C2D NAD 301 B 1 
HETATM 34 O O2D NAD . . . D 2 9.24 16.405 -7.114 1 25.28 ? O2D NAD 301 B 1 
HETATM 35 C C1D NAD . . . D 2 7.517 14.666 -7.249 1 27.61 ? C1D NAD 301 B 1 
HETATM 36 N N1N NAD . . . D 2 7.925 13.802 -8.359 1 29.48 ? N1N NAD 301 B 1 
HETATM 37 C C2N NAD . . . D 2 7.449 14.012 -9.595 1 31.39 ? C2N NAD 301 B 1 
HETATM 38 C C3N NAD . . . D 2 7.844 13.189 -10.645 1 43.01 ? C3N NAD 301 B 1 
HETATM 39 C C7N NAD . . . D 2 7.324 13.404 -12.036 1 45.98 ? C7N NAD 301 B 1 
HETATM 40 O O7N NAD . . . D 2 7.652 12.619 -12.91 1 38.57 ? O7N NAD 301 B 1 
HETATM 41 N N7N NAD . . . D 2 6.518 14.437 -12.285 1 32.13 ? N7N NAD 301 B 1 
HETATM 42 C C4N NAD . . . D 2 8.734 12.15 -10.406 1 36.98 ? C4N NAD 301 B 1 
HETATM 43 C C5N NAD . . . D 2 9.212 11.953 -9.119 1 35.39 ? C5N NAD 301 B 1 
HETATM 44 C C6N NAD . . . D 2 8.783 12.803 -8.106 1 28.95 ? C6N NAD 301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#