data_3WYH # _model_server_result.job_id I7MOnEDiBPavNRaLVKHrow _model_server_result.datetime_utc '2025-02-20 08:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 3WYH # _exptl.entry_id 3WYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS(HYDROXYETHYL)AMINOMETHANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WYH _cell.length_a 38.188 _cell.length_b 64.934 _cell.length_c 131.118 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C7 H17 N O3' _chem_comp.formula_weight 163.215 _chem_comp.id TAM _chem_comp.mon_nstd_flag . _chem_comp.name TRIS(HYDROXYETHYL)AMINOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TAM sing 334 n n C C2 TAM sing 335 n n C C3 TAM sing 336 n n C N TAM sing 337 n n C1 C4 TAM sing 338 n n C1 H11 TAM sing 339 n n C1 H12 TAM sing 340 n n C2 C5 TAM sing 341 n n C2 H21 TAM sing 342 n n C2 H22 TAM sing 343 n n C3 C6 TAM sing 344 n n C3 H31 TAM sing 345 n n C3 H32 TAM sing 346 n n C4 O4 TAM sing 347 n n C4 H41 TAM sing 348 n n C4 H42 TAM sing 349 n n C5 O5 TAM sing 350 n n C5 H51 TAM sing 351 n n C5 H52 TAM sing 352 n n C6 O6 TAM sing 353 n n C6 H61 TAM sing 354 n n C6 H62 TAM sing 355 n n N HN1 TAM sing 356 n n N HN2 TAM sing 357 n n O4 HO4 TAM sing 358 n n O5 HO5 TAM sing 359 n n O6 HO6 TAM sing 360 n n # _atom_sites.entry_id 3WYH _atom_sites.fract_transf_matrix[1][1] 0.026186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TAM A 1 201 1 TAM TAM . D 3 P6G A 1 202 1 P6G P6G . E 2 TAM B 1 201 1 TAM TAM . F 4 HOH A 1 301 1 HOH H2O . F 4 HOH A 2 302 2 HOH H2O . F 4 HOH A 3 303 3 HOH H2O . F 4 HOH A 4 304 5 HOH H2O . F 4 HOH A 5 305 9 HOH H2O . F 4 HOH A 6 306 11 HOH H2O . F 4 HOH A 7 307 13 HOH H2O . F 4 HOH A 8 308 14 HOH H2O . F 4 HOH A 9 309 15 HOH H2O . F 4 HOH A 10 310 17 HOH H2O . F 4 HOH A 11 311 21 HOH H2O . F 4 HOH A 12 312 24 HOH H2O . F 4 HOH A 13 313 25 HOH H2O . F 4 HOH A 14 314 28 HOH H2O . F 4 HOH A 15 315 29 HOH H2O . F 4 HOH A 16 316 31 HOH H2O . F 4 HOH A 17 317 32 HOH H2O . F 4 HOH A 18 318 34 HOH H2O . F 4 HOH A 19 319 38 HOH H2O . F 4 HOH A 20 320 41 HOH H2O . F 4 HOH A 21 321 46 HOH H2O . F 4 HOH A 22 322 47 HOH H2O . F 4 HOH A 23 323 49 HOH H2O . F 4 HOH A 24 324 51 HOH H2O . F 4 HOH A 25 325 53 HOH H2O . F 4 HOH A 26 326 55 HOH H2O . F 4 HOH A 27 327 57 HOH H2O . F 4 HOH A 28 328 58 HOH H2O . F 4 HOH A 29 329 59 HOH H2O . F 4 HOH A 30 330 60 HOH H2O . F 4 HOH A 31 331 61 HOH H2O . F 4 HOH A 32 332 63 HOH H2O . F 4 HOH A 33 333 64 HOH H2O . F 4 HOH A 34 334 65 HOH H2O . F 4 HOH A 35 335 69 HOH H2O . F 4 HOH A 36 336 70 HOH H2O . F 4 HOH A 37 337 71 HOH H2O . F 4 HOH A 38 338 72 HOH H2O . F 4 HOH A 39 339 75 HOH H2O . F 4 HOH A 40 340 76 HOH H2O . F 4 HOH A 41 341 77 HOH H2O . F 4 HOH A 42 342 78 HOH H2O . F 4 HOH A 43 343 83 HOH H2O . F 4 HOH A 44 344 86 HOH H2O . F 4 HOH A 45 345 87 HOH H2O . F 4 HOH A 46 346 88 HOH H2O . F 4 HOH A 47 347 90 HOH H2O . F 4 HOH A 48 348 91 HOH H2O . F 4 HOH A 49 349 92 HOH H2O . F 4 HOH A 50 350 93 HOH H2O . F 4 HOH A 51 351 97 HOH H2O . F 4 HOH A 52 352 98 HOH H2O . F 4 HOH A 53 353 100 HOH H2O . F 4 HOH A 54 354 101 HOH H2O . F 4 HOH A 55 355 102 HOH H2O . F 4 HOH A 56 356 104 HOH H2O . F 4 HOH A 57 357 106 HOH H2O . F 4 HOH A 58 358 107 HOH H2O . F 4 HOH A 59 359 108 HOH H2O . F 4 HOH A 60 360 109 HOH H2O . F 4 HOH A 61 361 112 HOH H2O . F 4 HOH A 62 362 113 HOH H2O . F 4 HOH A 63 363 115 HOH H2O . F 4 HOH A 64 364 117 HOH H2O . F 4 HOH A 65 365 119 HOH H2O . F 4 HOH A 66 366 127 HOH H2O . F 4 HOH A 67 367 128 HOH H2O . F 4 HOH A 68 368 129 HOH H2O . F 4 HOH A 69 369 130 HOH H2O . F 4 HOH A 70 370 132 HOH H2O . F 4 HOH A 71 371 133 HOH H2O . F 4 HOH A 72 372 136 HOH H2O . F 4 HOH A 73 373 137 HOH H2O . F 4 HOH A 74 374 138 HOH H2O . F 4 HOH A 75 375 139 HOH H2O . F 4 HOH A 76 376 141 HOH H2O . F 4 HOH A 77 377 142 HOH H2O . F 4 HOH A 78 378 143 HOH H2O . F 4 HOH A 79 379 144 HOH H2O . F 4 HOH A 80 380 145 HOH H2O . F 4 HOH A 81 381 148 HOH H2O . F 4 HOH A 82 382 151 HOH H2O . F 4 HOH A 83 383 155 HOH H2O . F 4 HOH A 84 384 156 HOH H2O . F 4 HOH A 85 385 160 HOH H2O . F 4 HOH A 86 386 161 HOH H2O . F 4 HOH A 87 387 162 HOH H2O . F 4 HOH A 88 388 163 HOH H2O . F 4 HOH A 89 389 164 HOH H2O . F 4 HOH A 90 390 165 HOH H2O . F 4 HOH A 91 391 168 HOH H2O . F 4 HOH A 92 392 170 HOH H2O . F 4 HOH A 93 393 171 HOH H2O . F 4 HOH A 94 394 172 HOH H2O . F 4 HOH A 95 395 173 HOH H2O . F 4 HOH A 96 396 175 HOH H2O . F 4 HOH A 97 397 176 HOH H2O . F 4 HOH A 98 398 177 HOH H2O . F 4 HOH A 99 399 182 HOH H2O . F 4 HOH A 100 400 184 HOH H2O . F 4 HOH A 101 401 185 HOH H2O . F 4 HOH A 102 402 186 HOH H2O . F 4 HOH A 103 403 191 HOH H2O . F 4 HOH A 104 404 193 HOH H2O . F 4 HOH A 105 405 196 HOH H2O . F 4 HOH A 106 406 199 HOH H2O . F 4 HOH A 107 407 203 HOH H2O . F 4 HOH A 108 408 205 HOH H2O . F 4 HOH A 109 409 206 HOH H2O . F 4 HOH A 110 410 207 HOH H2O . F 4 HOH A 111 411 209 HOH H2O . F 4 HOH A 112 412 210 HOH H2O . F 4 HOH A 113 413 211 HOH H2O . F 4 HOH A 114 414 212 HOH H2O . F 4 HOH A 115 415 213 HOH H2O . F 4 HOH A 116 416 214 HOH H2O . F 4 HOH A 117 417 215 HOH H2O . F 4 HOH A 118 418 216 HOH H2O . F 4 HOH A 119 419 317 HOH H2O . F 4 HOH A 120 420 318 HOH H2O . F 4 HOH A 121 421 319 HOH H2O . F 4 HOH A 122 422 320 HOH H2O . F 4 HOH A 123 423 321 HOH H2O . F 4 HOH A 124 424 322 HOH H2O . F 4 HOH A 125 425 333 HOH H2O . F 4 HOH A 126 426 334 HOH H2O . F 4 HOH A 127 427 336 HOH H2O . F 4 HOH A 128 428 342 HOH H2O . F 4 HOH A 129 429 343 HOH H2O . F 4 HOH A 130 430 344 HOH H2O . F 4 HOH A 131 431 346 HOH H2O . F 4 HOH A 132 432 347 HOH H2O . F 4 HOH A 133 433 348 HOH H2O . F 4 HOH A 134 434 350 HOH H2O . F 4 HOH A 135 435 354 HOH H2O . F 4 HOH A 136 436 355 HOH H2O . F 4 HOH A 137 437 358 HOH H2O . F 4 HOH A 138 438 359 HOH H2O . F 4 HOH A 139 439 360 HOH H2O . F 4 HOH A 140 440 361 HOH H2O . F 4 HOH A 141 441 362 HOH H2O . F 4 HOH A 142 442 367 HOH H2O . F 4 HOH A 143 443 368 HOH H2O . F 4 HOH A 144 444 369 HOH H2O . F 4 HOH A 145 445 370 HOH H2O . F 4 HOH A 146 446 371 HOH H2O . F 4 HOH A 147 447 372 HOH H2O . F 4 HOH A 148 448 373 HOH H2O . F 4 HOH A 149 449 159 HOH H2O . F 4 HOH A 150 450 325 HOH H2O . G 4 HOH B 1 301 335 HOH H2O . G 4 HOH B 2 302 363 HOH H2O . G 4 HOH B 3 303 4 HOH H2O . G 4 HOH B 4 304 6 HOH H2O . G 4 HOH B 5 305 7 HOH H2O . G 4 HOH B 6 306 8 HOH H2O . G 4 HOH B 7 307 10 HOH H2O . G 4 HOH B 8 308 12 HOH H2O . G 4 HOH B 9 309 16 HOH H2O . G 4 HOH B 10 310 18 HOH H2O . G 4 HOH B 11 311 19 HOH H2O . G 4 HOH B 12 312 20 HOH H2O . G 4 HOH B 13 313 22 HOH H2O . G 4 HOH B 14 314 23 HOH H2O . G 4 HOH B 15 315 26 HOH H2O . G 4 HOH B 16 316 27 HOH H2O . G 4 HOH B 17 317 30 HOH H2O . G 4 HOH B 18 318 33 HOH H2O . G 4 HOH B 19 319 35 HOH H2O . G 4 HOH B 20 320 36 HOH H2O . G 4 HOH B 21 321 37 HOH H2O . G 4 HOH B 22 322 39 HOH H2O . G 4 HOH B 23 323 40 HOH H2O . G 4 HOH B 24 324 42 HOH H2O . G 4 HOH B 25 325 43 HOH H2O . G 4 HOH B 26 326 44 HOH H2O . G 4 HOH B 27 327 45 HOH H2O . G 4 HOH B 28 328 48 HOH H2O . G 4 HOH B 29 329 50 HOH H2O . G 4 HOH B 30 330 52 HOH H2O . G 4 HOH B 31 331 54 HOH H2O . G 4 HOH B 32 332 56 HOH H2O . G 4 HOH B 33 333 62 HOH H2O . G 4 HOH B 34 334 66 HOH H2O . G 4 HOH B 35 335 67 HOH H2O . G 4 HOH B 36 336 68 HOH H2O . G 4 HOH B 37 337 73 HOH H2O . G 4 HOH B 38 338 74 HOH H2O . G 4 HOH B 39 339 79 HOH H2O . G 4 HOH B 40 340 80 HOH H2O . G 4 HOH B 41 341 81 HOH H2O . G 4 HOH B 42 342 82 HOH H2O . G 4 HOH B 43 343 84 HOH H2O . G 4 HOH B 44 344 85 HOH H2O . G 4 HOH B 45 345 89 HOH H2O . G 4 HOH B 46 346 94 HOH H2O . G 4 HOH B 47 347 95 HOH H2O . G 4 HOH B 48 348 96 HOH H2O . G 4 HOH B 49 349 99 HOH H2O . G 4 HOH B 50 350 103 HOH H2O . G 4 HOH B 51 351 105 HOH H2O . G 4 HOH B 52 352 110 HOH H2O . G 4 HOH B 53 353 111 HOH H2O . G 4 HOH B 54 354 114 HOH H2O . G 4 HOH B 55 355 116 HOH H2O . G 4 HOH B 56 356 118 HOH H2O . G 4 HOH B 57 357 120 HOH H2O . G 4 HOH B 58 358 121 HOH H2O . G 4 HOH B 59 359 122 HOH H2O . G 4 HOH B 60 360 123 HOH H2O . G 4 HOH B 61 361 124 HOH H2O . G 4 HOH B 62 362 125 HOH H2O . G 4 HOH B 63 363 126 HOH H2O . G 4 HOH B 64 364 131 HOH H2O . G 4 HOH B 65 365 134 HOH H2O . G 4 HOH B 66 366 135 HOH H2O . G 4 HOH B 67 367 140 HOH H2O . G 4 HOH B 68 368 146 HOH H2O . G 4 HOH B 69 369 147 HOH H2O . G 4 HOH B 70 370 149 HOH H2O . G 4 HOH B 71 371 150 HOH H2O . G 4 HOH B 72 372 152 HOH H2O . G 4 HOH B 73 373 153 HOH H2O . G 4 HOH B 74 374 154 HOH H2O . G 4 HOH B 75 375 157 HOH H2O . G 4 HOH B 76 376 158 HOH H2O . G 4 HOH B 77 377 166 HOH H2O . G 4 HOH B 78 378 167 HOH H2O . G 4 HOH B 79 379 169 HOH H2O . G 4 HOH B 80 380 174 HOH H2O . G 4 HOH B 81 381 178 HOH H2O . G 4 HOH B 82 382 179 HOH H2O . G 4 HOH B 83 383 180 HOH H2O . G 4 HOH B 84 384 181 HOH H2O . G 4 HOH B 85 385 183 HOH H2O . G 4 HOH B 86 386 187 HOH H2O . G 4 HOH B 87 387 188 HOH H2O . G 4 HOH B 88 388 189 HOH H2O . G 4 HOH B 89 389 190 HOH H2O . G 4 HOH B 90 390 192 HOH H2O . G 4 HOH B 91 391 194 HOH H2O . G 4 HOH B 92 392 195 HOH H2O . G 4 HOH B 93 393 197 HOH H2O . G 4 HOH B 94 394 198 HOH H2O . G 4 HOH B 95 395 200 HOH H2O . G 4 HOH B 96 396 201 HOH H2O . G 4 HOH B 97 397 202 HOH H2O . G 4 HOH B 98 398 204 HOH H2O . G 4 HOH B 99 399 208 HOH H2O . G 4 HOH B 100 400 323 HOH H2O . G 4 HOH B 101 401 324 HOH H2O . G 4 HOH B 102 402 326 HOH H2O . G 4 HOH B 103 403 327 HOH H2O . G 4 HOH B 104 404 328 HOH H2O . G 4 HOH B 105 405 329 HOH H2O . G 4 HOH B 106 406 330 HOH H2O . G 4 HOH B 107 407 331 HOH H2O . G 4 HOH B 108 408 332 HOH H2O . G 4 HOH B 109 409 337 HOH H2O . G 4 HOH B 110 410 338 HOH H2O . G 4 HOH B 111 411 339 HOH H2O . G 4 HOH B 112 412 340 HOH H2O . G 4 HOH B 113 413 341 HOH H2O . G 4 HOH B 114 414 345 HOH H2O . G 4 HOH B 115 415 349 HOH H2O . G 4 HOH B 116 416 351 HOH H2O . G 4 HOH B 117 417 352 HOH H2O . G 4 HOH B 118 418 353 HOH H2O . G 4 HOH B 119 419 356 HOH H2O . G 4 HOH B 120 420 357 HOH H2O . G 4 HOH B 121 421 364 HOH H2O . G 4 HOH B 122 422 365 HOH H2O . G 4 HOH B 123 423 366 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TAM . . . E 2 20.16 -3.894 -17.815 1 33.29 ? C TAM 201 B 1 HETATM 2 C C1 TAM . . . E 2 19.95 -5.244 -18.457 1 33.75 ? C1 TAM 201 B 1 HETATM 3 C C2 TAM . . . E 2 19.176 -3.733 -16.616 1 29.59 ? C2 TAM 201 B 1 HETATM 4 C C3 TAM . . . E 2 20.101 -2.824 -18.903 1 33.86 ? C3 TAM 201 B 1 HETATM 5 C C4 TAM . . . E 2 20.799 -6.329 -17.794 1 34.76 ? C4 TAM 201 B 1 HETATM 6 C C5 TAM . . . E 2 17.681 -3.345 -16.813 1 29.82 ? C5 TAM 201 B 1 HETATM 7 C C6 TAM . . . E 2 20.236 -1.444 -18.277 1 34.47 ? C6 TAM 201 B 1 HETATM 8 N N TAM . . . E 2 21.565 -3.925 -17.369 1 33.12 ? N TAM 201 B 1 HETATM 9 O O4 TAM . . . E 2 20.18 -7.6 -18.025 1 35.73 ? O4 TAM 201 B 1 HETATM 10 O O5 TAM . . . E 2 17.053 -3.739 -18.067 1 20.59 ? O5 TAM 201 B 1 HETATM 11 O O6 TAM . . . E 2 20.048 -0.443 -19.263 1 38.47 ? O6 TAM 201 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #