data_3WYK # _model_server_result.job_id 9bKJuX59jn9jLiIq_Wkx8w _model_server_result.datetime_utc '2025-03-04 08:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3WYK # _exptl.entry_id 3WYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WYK _cell.length_a 49.696 _cell.length_b 81.696 _cell.length_c 161.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 519 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc2 A NE2 HIS 112 A HIS 553 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc3 A OD1 ASP 113 A ASP 554 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A OD2 ASP 113 A ASP 554 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A OD1 ASP 223 A ASP 664 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 C MG MG . A MG 1001 1_555 I O HOH . A HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc7 C MG MG . A MG 1001 1_555 I O HOH . A HOH 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc8 C MG MG . A MG 1001 1_555 I O HOH . A HOH 1169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc9 C MG MG . A MG 1001 1_555 I O HOH . A HOH 1170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc10 C MG MG . A MG 1001 1_555 I O HOH . A HOH 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc11 D ZN ZN . A ZN 1002 1_555 I O HOH . A HOH 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc12 D ZN ZN . A ZN 1002 1_555 I O HOH . A HOH 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc13 B NE2 HIS 78 B HIS 519 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc14 B NE2 HIS 112 B HIS 553 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc15 B OD1 ASP 113 B ASP 554 1_555 F MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc16 B OD2 ASP 113 B ASP 554 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc17 B OD1 ASP 223 B ASP 664 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc18 F MG MG . B MG 1001 1_555 J O HOH . B HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc19 F MG MG . B MG 1001 1_555 J O HOH . B HOH 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc20 F MG MG . B MG 1001 1_555 J O HOH . B HOH 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc21 F MG MG . B MG 1001 1_555 J O HOH . B HOH 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc22 F MG MG . B MG 1001 1_555 J O HOH . B HOH 1166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc23 G ZN ZN . B ZN 1002 1_555 J O HOH . B HOH 1162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc24 G ZN ZN . B ZN 1002 1_555 J O HOH . B HOH 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WYK _atom_sites.fract_transf_matrix[1][1] 0.020122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1001 MG MG . D 3 ZN A 1 1002 1002 ZN ZN . E 4 3KG A 1 1003 1003 3KG UNL . F 2 MG B 1 1001 1001 MG MG . G 3 ZN B 1 1002 1002 ZN ZN . H 4 3KG B 1 1003 1003 3KG UNL . I 5 HOH A 1 1101 1100 HOH HOH . I 5 HOH A 2 1102 1101 HOH HOH . I 5 HOH A 3 1103 1102 HOH HOH . I 5 HOH A 4 1104 1103 HOH HOH . I 5 HOH A 5 1105 1104 HOH HOH . I 5 HOH A 6 1106 1105 HOH HOH . I 5 HOH A 7 1107 1106 HOH HOH . I 5 HOH A 8 1108 1107 HOH HOH . I 5 HOH A 9 1109 1108 HOH HOH . I 5 HOH A 10 1110 1109 HOH HOH . I 5 HOH A 11 1111 1110 HOH HOH . I 5 HOH A 12 1112 1111 HOH HOH . I 5 HOH A 13 1113 1112 HOH HOH . I 5 HOH A 14 1114 1113 HOH HOH . I 5 HOH A 15 1115 1114 HOH HOH . I 5 HOH A 16 1116 1115 HOH HOH . I 5 HOH A 17 1117 1116 HOH HOH . I 5 HOH A 18 1118 1117 HOH HOH . I 5 HOH A 19 1119 1118 HOH HOH . I 5 HOH A 20 1120 1119 HOH HOH . I 5 HOH A 21 1121 1120 HOH HOH . I 5 HOH A 22 1122 1121 HOH HOH . I 5 HOH A 23 1123 1122 HOH HOH . I 5 HOH A 24 1124 1123 HOH HOH . I 5 HOH A 25 1125 1124 HOH HOH . I 5 HOH A 26 1126 1125 HOH HOH . I 5 HOH A 27 1127 1126 HOH HOH . I 5 HOH A 28 1128 1127 HOH HOH . I 5 HOH A 29 1129 1128 HOH HOH . I 5 HOH A 30 1130 1129 HOH HOH . I 5 HOH A 31 1131 1130 HOH HOH . I 5 HOH A 32 1132 1131 HOH HOH . I 5 HOH A 33 1133 1132 HOH HOH . I 5 HOH A 34 1134 1133 HOH HOH . I 5 HOH A 35 1135 1134 HOH HOH . I 5 HOH A 36 1136 1135 HOH HOH . I 5 HOH A 37 1137 1136 HOH HOH . I 5 HOH A 38 1138 1137 HOH HOH . I 5 HOH A 39 1139 1138 HOH HOH . I 5 HOH A 40 1140 1139 HOH HOH . I 5 HOH A 41 1141 1140 HOH HOH . I 5 HOH A 42 1142 1141 HOH HOH . I 5 HOH A 43 1143 1142 HOH HOH . I 5 HOH A 44 1144 1143 HOH HOH . I 5 HOH A 45 1145 1144 HOH HOH . I 5 HOH A 46 1146 1145 HOH HOH . I 5 HOH A 47 1147 1146 HOH HOH . I 5 HOH A 48 1148 1147 HOH HOH . I 5 HOH A 49 1149 1148 HOH HOH . I 5 HOH A 50 1150 1149 HOH HOH . I 5 HOH A 51 1151 1150 HOH HOH . I 5 HOH A 52 1152 1151 HOH HOH . I 5 HOH A 53 1153 1152 HOH HOH . I 5 HOH A 54 1154 1153 HOH HOH . I 5 HOH A 55 1155 1154 HOH HOH . I 5 HOH A 56 1156 1155 HOH HOH . I 5 HOH A 57 1157 1156 HOH HOH . I 5 HOH A 58 1158 1157 HOH HOH . I 5 HOH A 59 1159 1158 HOH HOH . I 5 HOH A 60 1160 1159 HOH HOH . I 5 HOH A 61 1161 1160 HOH HOH . I 5 HOH A 62 1162 1161 HOH HOH . I 5 HOH A 63 1163 1162 HOH HOH . I 5 HOH A 64 1164 1163 HOH HOH . I 5 HOH A 65 1165 1164 HOH HOH . I 5 HOH A 66 1166 1165 HOH HOH . I 5 HOH A 67 1167 1166 HOH HOH . I 5 HOH A 68 1168 1167 HOH HOH . I 5 HOH A 69 1169 1168 HOH HOH . I 5 HOH A 70 1170 1169 HOH HOH . I 5 HOH A 71 1171 1170 HOH HOH . I 5 HOH A 72 1172 1171 HOH HOH . I 5 HOH A 73 1173 1172 HOH HOH . I 5 HOH A 74 1174 1173 HOH HOH . I 5 HOH A 75 1175 1174 HOH HOH . I 5 HOH A 76 1176 1175 HOH HOH . I 5 HOH A 77 1177 1176 HOH HOH . I 5 HOH A 78 1178 1177 HOH HOH . I 5 HOH A 79 1179 1167 HOH HOH . J 5 HOH B 1 1101 1100 HOH HOH . J 5 HOH B 2 1102 1101 HOH HOH . J 5 HOH B 3 1103 1102 HOH HOH . J 5 HOH B 4 1104 1103 HOH HOH . J 5 HOH B 5 1105 1104 HOH HOH . J 5 HOH B 6 1106 1105 HOH HOH . J 5 HOH B 7 1107 1106 HOH HOH . J 5 HOH B 8 1108 1107 HOH HOH . J 5 HOH B 9 1109 1108 HOH HOH . J 5 HOH B 10 1110 1109 HOH HOH . J 5 HOH B 11 1111 1110 HOH HOH . J 5 HOH B 12 1112 1111 HOH HOH . J 5 HOH B 13 1113 1112 HOH HOH . J 5 HOH B 14 1114 1113 HOH HOH . J 5 HOH B 15 1115 1114 HOH HOH . J 5 HOH B 16 1116 1115 HOH HOH . J 5 HOH B 17 1117 1116 HOH HOH . J 5 HOH B 18 1118 1117 HOH HOH . J 5 HOH B 19 1119 1118 HOH HOH . J 5 HOH B 20 1120 1119 HOH HOH . J 5 HOH B 21 1121 1120 HOH HOH . J 5 HOH B 22 1122 1121 HOH HOH . J 5 HOH B 23 1123 1122 HOH HOH . J 5 HOH B 24 1124 1123 HOH HOH . J 5 HOH B 25 1125 1124 HOH HOH . J 5 HOH B 26 1126 1125 HOH HOH . J 5 HOH B 27 1127 1126 HOH HOH . J 5 HOH B 28 1128 1127 HOH HOH . J 5 HOH B 29 1129 1128 HOH HOH . J 5 HOH B 30 1130 1129 HOH HOH . J 5 HOH B 31 1131 1130 HOH HOH . J 5 HOH B 32 1132 1131 HOH HOH . J 5 HOH B 33 1133 1132 HOH HOH . J 5 HOH B 34 1134 1133 HOH HOH . J 5 HOH B 35 1135 1134 HOH HOH . J 5 HOH B 36 1136 1135 HOH HOH . J 5 HOH B 37 1137 1136 HOH HOH . J 5 HOH B 38 1138 1137 HOH HOH . J 5 HOH B 39 1139 1138 HOH HOH . J 5 HOH B 40 1140 1139 HOH HOH . J 5 HOH B 41 1141 1140 HOH HOH . J 5 HOH B 42 1142 1141 HOH HOH . J 5 HOH B 43 1143 1142 HOH HOH . J 5 HOH B 44 1144 1143 HOH HOH . J 5 HOH B 45 1145 1144 HOH HOH . J 5 HOH B 46 1146 1145 HOH HOH . J 5 HOH B 47 1147 1146 HOH HOH . J 5 HOH B 48 1148 1147 HOH HOH . J 5 HOH B 49 1149 1148 HOH HOH . J 5 HOH B 50 1150 1149 HOH HOH . J 5 HOH B 51 1151 1150 HOH HOH . J 5 HOH B 52 1152 1151 HOH HOH . J 5 HOH B 53 1153 1152 HOH HOH . J 5 HOH B 54 1154 1153 HOH HOH . J 5 HOH B 55 1155 1154 HOH HOH . J 5 HOH B 56 1156 1155 HOH HOH . J 5 HOH B 57 1157 1156 HOH HOH . J 5 HOH B 58 1158 1157 HOH HOH . J 5 HOH B 59 1159 1158 HOH HOH . J 5 HOH B 60 1160 1159 HOH HOH . J 5 HOH B 61 1161 1160 HOH HOH . J 5 HOH B 62 1162 1161 HOH HOH . J 5 HOH B 63 1163 1162 HOH HOH . J 5 HOH B 64 1164 1163 HOH HOH . J 5 HOH B 65 1165 1164 HOH HOH . J 5 HOH B 66 1166 1165 HOH HOH . J 5 HOH B 67 1167 1166 HOH HOH . J 5 HOH B 68 1168 1168 HOH HOH . J 5 HOH B 69 1169 1169 HOH HOH . J 5 HOH B 70 1170 1170 HOH HOH . J 5 HOH B 71 1171 1171 HOH HOH . J 5 HOH B 72 1172 1172 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.885 _atom_site.Cartn_y 5.112 _atom_site.Cartn_z -19.642 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #