data_3WYL # _model_server_result.job_id gzAiNYxaNJ2vp09Y2EIEwQ _model_server_result.datetime_utc '2025-03-04 08:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3WYL # _exptl.entry_id 3WYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WYL _cell.length_a 49.881 _cell.length_b 81.833 _cell.length_c 162.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 519 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A NE2 HIS 112 A HIS 553 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 A OD2 ASP 113 A ASP 554 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 A OD1 ASP 113 A ASP 554 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc5 A OD1 ASP 223 A ASP 664 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 B NE2 HIS 78 B HIS 519 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc14 B NE2 HIS 112 B HIS 553 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc15 B OD2 ASP 113 B ASP 554 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 B OD1 ASP 113 B ASP 554 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc17 B OD1 ASP 223 B ASP 664 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc18 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc19 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc21 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc22 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc23 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc24 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WYL _atom_sites.fract_transf_matrix[1][1] 0.020048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 3KB A 1 1003 1003 3KB UNL . F 2 ZN B 1 1001 1001 ZN ZN . G 3 MG B 1 1002 1002 MG MG . H 4 3KB B 1 1003 1003 3KB UNL . I 5 HOH A 1 1100 1100 HOH HOH . I 5 HOH A 2 1101 1101 HOH HOH . I 5 HOH A 3 1102 1102 HOH HOH . I 5 HOH A 4 1103 1103 HOH HOH . I 5 HOH A 5 1104 1104 HOH HOH . I 5 HOH A 6 1105 1105 HOH HOH . I 5 HOH A 7 1106 1106 HOH HOH . I 5 HOH A 8 1107 1107 HOH HOH . I 5 HOH A 9 1108 1108 HOH HOH . I 5 HOH A 10 1109 1109 HOH HOH . I 5 HOH A 11 1110 1110 HOH HOH . I 5 HOH A 12 1111 1111 HOH HOH . I 5 HOH A 13 1112 1112 HOH HOH . I 5 HOH A 14 1113 1113 HOH HOH . I 5 HOH A 15 1114 1114 HOH HOH . I 5 HOH A 16 1115 1115 HOH HOH . I 5 HOH A 17 1116 1116 HOH HOH . I 5 HOH A 18 1117 1117 HOH HOH . I 5 HOH A 19 1118 1118 HOH HOH . J 5 HOH B 1 1100 1100 HOH HOH . J 5 HOH B 2 1101 1101 HOH HOH . J 5 HOH B 3 1102 1102 HOH HOH . J 5 HOH B 4 1103 1103 HOH HOH . J 5 HOH B 5 1104 1104 HOH HOH . J 5 HOH B 6 1105 1105 HOH HOH . J 5 HOH B 7 1106 1106 HOH HOH . J 5 HOH B 8 1107 1107 HOH HOH . J 5 HOH B 9 1108 1108 HOH HOH . J 5 HOH B 10 1109 1109 HOH HOH . J 5 HOH B 11 1110 1110 HOH HOH . J 5 HOH B 12 1111 1111 HOH HOH . J 5 HOH B 13 1112 1112 HOH HOH . J 5 HOH B 14 1113 1113 HOH HOH . J 5 HOH B 15 1114 1114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.93 _atom_site.Cartn_y 4.04 _atom_site.Cartn_z -16.054 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #