data_3WYL # _model_server_result.job_id 97kC98cnks-UKrAHwL3Zcg _model_server_result.datetime_utc '2025-03-04 08:13:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 3WYL # _exptl.entry_id 3WYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.365 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methoxy-3-(1-phenyl-1H-pyrazol-5-yl)-1-[3-(trifluoromethyl)phenyl]pyridazin-4(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WYL _cell.length_a 49.881 _cell.length_b 81.833 _cell.length_c 162.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 519 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A NE2 HIS 112 A HIS 553 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 A OD2 ASP 113 A ASP 554 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 A OD1 ASP 113 A ASP 554 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc5 A OD1 ASP 223 A ASP 664 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 B NE2 HIS 78 B HIS 519 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc14 B NE2 HIS 112 B HIS 553 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc15 B OD2 ASP 113 B ASP 554 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 B OD1 ASP 113 B ASP 554 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc17 B OD1 ASP 223 B ASP 664 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc18 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc19 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc21 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc22 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc23 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc24 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? # _chem_comp.formula 'C21 H15 F3 N4 O2' _chem_comp.formula_weight 412.365 _chem_comp.id 3KB _chem_comp.mon_nstd_flag . _chem_comp.name 5-methoxy-3-(1-phenyl-1H-pyrazol-5-yl)-1-[3-(trifluoromethyl)phenyl]pyridazin-4(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F10 C9 3KB sing 1 n n F12 C9 3KB sing 2 n n C9 F11 3KB sing 3 n n C9 C8 3KB sing 4 n n C13 C8 3KB doub 5 n y C13 C14 3KB sing 6 n y C8 C7 3KB sing 7 n y C14 C15 3KB doub 8 n y C7 C6 3KB doub 9 n y C15 C6 3KB sing 10 n y C6 N5 3KB sing 11 n n C1 O2 3KB sing 12 n n C4 N5 3KB sing 13 n n C4 C3 3KB doub 14 n n N5 N16 3KB sing 15 n n C26 C27 3KB doub 16 n y C26 C25 3KB sing 17 n y C3 O2 3KB sing 18 n n C3 C29 3KB sing 19 n n N16 C17 3KB doub 20 n n C27 C28 3KB sing 21 n y C25 C24 3KB doub 22 n y C28 C23 3KB doub 23 n y C17 C29 3KB sing 24 n n C17 C18 3KB sing 25 n n C29 O30 3KB doub 26 n n C24 C23 3KB sing 27 n y C23 N22 3KB sing 28 n n C18 N22 3KB sing 29 n y C18 C19 3KB doub 30 n y N22 N21 3KB sing 31 n y C19 C20 3KB sing 32 n y N21 C20 3KB doub 33 n y C26 H1 3KB sing 34 n n C25 H2 3KB sing 35 n n C27 H3 3KB sing 36 n n C14 H4 3KB sing 37 n n C13 H5 3KB sing 38 n n C24 H6 3KB sing 39 n n C28 H7 3KB sing 40 n n C15 H8 3KB sing 41 n n C19 H9 3KB sing 42 n n C7 H10 3KB sing 43 n n C20 H11 3KB sing 44 n n C4 H12 3KB sing 45 n n C1 H13 3KB sing 46 n n C1 H14 3KB sing 47 n n C1 H15 3KB sing 48 n n # _atom_sites.entry_id 3WYL _atom_sites.fract_transf_matrix[1][1] 0.020048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 3KB A 1 1003 1003 3KB UNL . F 2 ZN B 1 1001 1001 ZN ZN . G 3 MG B 1 1002 1002 MG MG . H 4 3KB B 1 1003 1003 3KB UNL . I 5 HOH A 1 1100 1100 HOH HOH . I 5 HOH A 2 1101 1101 HOH HOH . I 5 HOH A 3 1102 1102 HOH HOH . I 5 HOH A 4 1103 1103 HOH HOH . I 5 HOH A 5 1104 1104 HOH HOH . I 5 HOH A 6 1105 1105 HOH HOH . I 5 HOH A 7 1106 1106 HOH HOH . I 5 HOH A 8 1107 1107 HOH HOH . I 5 HOH A 9 1108 1108 HOH HOH . I 5 HOH A 10 1109 1109 HOH HOH . I 5 HOH A 11 1110 1110 HOH HOH . I 5 HOH A 12 1111 1111 HOH HOH . I 5 HOH A 13 1112 1112 HOH HOH . I 5 HOH A 14 1113 1113 HOH HOH . I 5 HOH A 15 1114 1114 HOH HOH . I 5 HOH A 16 1115 1115 HOH HOH . I 5 HOH A 17 1116 1116 HOH HOH . I 5 HOH A 18 1117 1117 HOH HOH . I 5 HOH A 19 1118 1118 HOH HOH . J 5 HOH B 1 1100 1100 HOH HOH . J 5 HOH B 2 1101 1101 HOH HOH . J 5 HOH B 3 1102 1102 HOH HOH . J 5 HOH B 4 1103 1103 HOH HOH . J 5 HOH B 5 1104 1104 HOH HOH . J 5 HOH B 6 1105 1105 HOH HOH . J 5 HOH B 7 1106 1106 HOH HOH . J 5 HOH B 8 1107 1107 HOH HOH . J 5 HOH B 9 1108 1108 HOH HOH . J 5 HOH B 10 1109 1109 HOH HOH . J 5 HOH B 11 1110 1110 HOH HOH . J 5 HOH B 12 1111 1111 HOH HOH . J 5 HOH B 13 1112 1112 HOH HOH . J 5 HOH B 14 1113 1113 HOH HOH . J 5 HOH B 15 1114 1114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 3KB . . . H 4 8.417 -30.63 -35.066 1 50.65 ? C26 3KB 1003 B 1 HETATM 2 C C25 3KB . . . H 4 8.63 -29.279 -34.901 1 50.81 ? C25 3KB 1003 B 1 HETATM 3 C C27 3KB . . . H 4 7.215 -31.192 -34.7 1 51.24 ? C27 3KB 1003 B 1 HETATM 4 C C14 3KB . . . H 4 4.274 -30.754 -40.165 1 67.84 ? C14 3KB 1003 B 1 HETATM 5 C C13 3KB . . . H 4 5.508 -31.355 -40.026 1 70 ? C13 3KB 1003 B 1 HETATM 6 C C24 3KB . . . H 4 7.65 -28.48 -34.353 1 50.44 ? C24 3KB 1003 B 1 HETATM 7 C C28 3KB . . . H 4 6.226 -30.396 -34.159 1 52.42 ? C28 3KB 1003 B 1 HETATM 8 C C15 3KB . . . H 4 3.92 -29.71 -39.338 1 65.61 ? C15 3KB 1003 B 1 HETATM 9 C C19 3KB . . . H 4 3.624 -27.168 -32.99 1 48.83 ? C19 3KB 1003 B 1 HETATM 10 C C7 3KB . . . H 4 6.027 -29.871 -38.235 1 65.97 ? C7 3KB 1003 B 1 HETATM 11 C C20 3KB . . . H 4 4.233 -27.63 -31.804 1 47.91 ? C20 3KB 1003 B 1 HETATM 12 C C8 3KB . . . H 4 6.394 -30.92 -39.058 1 72.85 ? C8 3KB 1003 B 1 HETATM 13 C C23 3KB . . . H 4 6.453 -29.049 -33.99 1 51.19 ? C23 3KB 1003 B 1 HETATM 14 C C6 3KB . . . H 4 4.798 -29.257 -38.37 1 62.25 ? C6 3KB 1003 B 1 HETATM 15 C C18 3KB . . . H 4 4.451 -27.597 -34.004 1 50.98 ? C18 3KB 1003 B 1 HETATM 16 C C4 3KB . . . H 4 3.969 -27.014 -38.034 1 54.93 ? C4 3KB 1003 B 1 HETATM 17 C C17 3KB . . . H 4 4.324 -27.427 -35.408 1 52 ? C17 3KB 1003 B 1 HETATM 18 C C3 3KB . . . H 4 3.606 -25.938 -37.337 1 53.35 ? C3 3KB 1003 B 1 HETATM 19 C C29 3KB . . . H 4 3.786 -26.113 -35.886 1 54 ? C29 3KB 1003 B 1 HETATM 20 C C1 3KB . . . H 4 3.176 -24.658 -39.234 1 50.86 ? C1 3KB 1003 B 1 HETATM 21 C C9 3KB . . . H 4 7.745 -31.578 -38.915 1 77.52 ? C9 3KB 1003 B 1 HETATM 22 N N21 3KB . . . H 4 5.357 -28.308 -32.045 1 49.1 ? N21 3KB 1003 B 1 HETATM 23 N N16 3KB . . . H 4 4.636 -28.394 -36.2 1 54.46 ? N16 3KB 1003 B 1 HETATM 24 N N22 3KB . . . H 4 5.464 -28.275 -33.388 1 51.21 ? N22 3KB 1003 B 1 HETATM 25 N N5 3KB . . . H 4 4.459 -28.178 -37.527 1 56.62 ? N5 3KB 1003 B 1 HETATM 26 O O30 3KB . . . H 4 3.517 -25.246 -35.062 1 53.77 ? O30 3KB 1003 B 1 HETATM 27 O O2 3KB . . . H 4 3.109 -24.731 -37.81 1 51.27 ? O2 3KB 1003 B 1 HETATM 28 F F10 3KB . . . H 4 8.537 -31.445 -40.035 1 79.42 ? F10 3KB 1003 B 1 HETATM 29 F F11 3KB . . . H 4 8.505 -31.078 -37.893 1 75.09 ? F11 3KB 1003 B 1 HETATM 30 F F12 3KB . . . H 4 7.628 -32.916 -38.649 1 80.2 ? F12 3KB 1003 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #