data_3WYQ # _model_server_result.job_id 9T72bjlBtRbdIXsuFOo7uA _model_server_result.datetime_utc '2024-11-16 19:42:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3WYQ # _exptl.entry_id 3WYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.68 _cell.angle_gamma 90 _cell.entry_id 3WYQ _cell.length_a 63.223 _cell.length_b 67.066 _cell.length_c 56.363 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 37.915611 0 50.361929 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 3WYQ _atom_sites.fract_transf_matrix[1][1] 0.015817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTN A 1 1001 1001 BTN BTN . D 3 GOL A 1 1002 5600 GOL GOL . E 3 GOL A 1 1003 5601 GOL GOL . F 3 GOL A 1 1004 5603 GOL GOL . G 3 GOL A 1 1005 5605 GOL GOL . H 3 GOL A 1 1006 5606 GOL GOL . I 3 GOL A 1 1007 5607 GOL GOL . J 4 SO4 A 1 1008 1 SO4 SO4 . K 2 BTN B 1 1001 1001 BTN BTN . L 3 GOL B 1 1002 5602 GOL GOL . M 3 GOL B 1 1003 5604 GOL GOL . N 3 GOL B 1 1004 5608 GOL GOL . O 3 GOL B 1 1005 5609 GOL GOL . P 5 HOH A 1 1101 1 HOH HOH . P 5 HOH A 2 1102 2 HOH HOH . P 5 HOH A 3 1103 3 HOH HOH . P 5 HOH A 4 1104 4 HOH HOH . P 5 HOH A 5 1105 5 HOH HOH . P 5 HOH A 6 1106 6 HOH HOH . P 5 HOH A 7 1107 7 HOH HOH . P 5 HOH A 8 1108 8 HOH HOH . P 5 HOH A 9 1109 9 HOH HOH . P 5 HOH A 10 1110 10 HOH HOH . P 5 HOH A 11 1111 11 HOH HOH . P 5 HOH A 12 1112 12 HOH HOH . P 5 HOH A 13 1113 13 HOH HOH . P 5 HOH A 14 1114 14 HOH HOH . P 5 HOH A 15 1115 15 HOH HOH . P 5 HOH A 16 1116 16 HOH HOH . P 5 HOH A 17 1117 20 HOH HOH . P 5 HOH A 18 1118 21 HOH HOH . P 5 HOH A 19 1119 22 HOH HOH . P 5 HOH A 20 1120 23 HOH HOH . P 5 HOH A 21 1121 24 HOH HOH . P 5 HOH A 22 1122 25 HOH HOH . P 5 HOH A 23 1123 26 HOH HOH . P 5 HOH A 24 1124 27 HOH HOH . P 5 HOH A 25 1125 28 HOH HOH . P 5 HOH A 26 1126 29 HOH HOH . P 5 HOH A 27 1127 30 HOH HOH . P 5 HOH A 28 1128 31 HOH HOH . P 5 HOH A 29 1129 32 HOH HOH . P 5 HOH A 30 1130 33 HOH HOH . P 5 HOH A 31 1131 34 HOH HOH . P 5 HOH A 32 1132 36 HOH HOH . P 5 HOH A 33 1133 38 HOH HOH . P 5 HOH A 34 1134 39 HOH HOH . P 5 HOH A 35 1135 40 HOH HOH . P 5 HOH A 36 1136 41 HOH HOH . P 5 HOH A 37 1137 42 HOH HOH . P 5 HOH A 38 1138 43 HOH HOH . P 5 HOH A 39 1139 44 HOH HOH . P 5 HOH A 40 1140 48 HOH HOH . P 5 HOH A 41 1141 49 HOH HOH . P 5 HOH A 42 1142 50 HOH HOH . P 5 HOH A 43 1143 51 HOH HOH . P 5 HOH A 44 1144 52 HOH HOH . P 5 HOH A 45 1145 54 HOH HOH . P 5 HOH A 46 1146 55 HOH HOH . P 5 HOH A 47 1147 60 HOH HOH . P 5 HOH A 48 1148 61 HOH HOH . P 5 HOH A 49 1149 62 HOH HOH . P 5 HOH A 50 1150 63 HOH HOH . P 5 HOH A 51 1151 64 HOH HOH . P 5 HOH A 52 1152 66 HOH HOH . P 5 HOH A 53 1153 67 HOH HOH . P 5 HOH A 54 1154 68 HOH HOH . P 5 HOH A 55 1155 72 HOH HOH . P 5 HOH A 56 1156 73 HOH HOH . P 5 HOH A 57 1157 74 HOH HOH . P 5 HOH A 58 1158 75 HOH HOH . P 5 HOH A 59 1159 77 HOH HOH . P 5 HOH A 60 1160 79 HOH HOH . P 5 HOH A 61 1161 80 HOH HOH . P 5 HOH A 62 1162 81 HOH HOH . P 5 HOH A 63 1163 82 HOH HOH . P 5 HOH A 64 1164 84 HOH HOH . P 5 HOH A 65 1165 85 HOH HOH . P 5 HOH A 66 1166 86 HOH HOH . P 5 HOH A 67 1167 87 HOH HOH . P 5 HOH A 68 1168 88 HOH HOH . P 5 HOH A 69 1169 89 HOH HOH . P 5 HOH A 70 1170 90 HOH HOH . P 5 HOH A 71 1171 91 HOH HOH . P 5 HOH A 72 1172 92 HOH HOH . P 5 HOH A 73 1173 93 HOH HOH . P 5 HOH A 74 1174 94 HOH HOH . P 5 HOH A 75 1175 139 HOH HOH . P 5 HOH A 76 1176 140 HOH HOH . P 5 HOH A 77 1177 141 HOH HOH . P 5 HOH A 78 1178 142 HOH HOH . P 5 HOH A 79 1179 143 HOH HOH . P 5 HOH A 80 1180 144 HOH HOH . P 5 HOH A 81 1181 145 HOH HOH . P 5 HOH A 82 1182 149 HOH HOH . P 5 HOH A 83 1183 150 HOH HOH . P 5 HOH A 84 1184 151 HOH HOH . P 5 HOH A 85 1185 153 HOH HOH . P 5 HOH A 86 1186 154 HOH HOH . P 5 HOH A 87 1187 157 HOH HOH . P 5 HOH A 88 1188 160 HOH HOH . P 5 HOH A 89 1189 162 HOH HOH . P 5 HOH A 90 1190 165 HOH HOH . P 5 HOH A 91 1191 166 HOH HOH . P 5 HOH A 92 1192 169 HOH HOH . P 5 HOH A 93 1193 172 HOH HOH . P 5 HOH A 94 1194 174 HOH HOH . P 5 HOH A 95 1195 175 HOH HOH . P 5 HOH A 96 1196 176 HOH HOH . P 5 HOH A 97 1197 177 HOH HOH . P 5 HOH A 98 1198 178 HOH HOH . P 5 HOH A 99 1199 179 HOH HOH . P 5 HOH A 100 1200 180 HOH HOH . P 5 HOH A 101 1201 181 HOH HOH . P 5 HOH A 102 1202 182 HOH HOH . P 5 HOH A 103 1203 183 HOH HOH . P 5 HOH A 104 1204 184 HOH HOH . P 5 HOH A 105 1205 193 HOH HOH . P 5 HOH A 106 1206 197 HOH HOH . P 5 HOH A 107 1207 198 HOH HOH . P 5 HOH A 108 1208 199 HOH HOH . P 5 HOH A 109 1209 203 HOH HOH . P 5 HOH A 110 1210 206 HOH HOH . P 5 HOH A 111 1211 207 HOH HOH . P 5 HOH A 112 1212 208 HOH HOH . P 5 HOH A 113 1213 210 HOH HOH . P 5 HOH A 114 1214 211 HOH HOH . P 5 HOH A 115 1215 212 HOH HOH . P 5 HOH A 116 1216 213 HOH HOH . P 5 HOH A 117 1217 214 HOH HOH . P 5 HOH A 118 1218 216 HOH HOH . P 5 HOH A 119 1219 223 HOH HOH . P 5 HOH A 120 1220 226 HOH HOH . P 5 HOH A 121 1221 227 HOH HOH . P 5 HOH A 122 1222 228 HOH HOH . P 5 HOH A 123 1223 229 HOH HOH . P 5 HOH A 124 1224 230 HOH HOH . P 5 HOH A 125 1225 231 HOH HOH . P 5 HOH A 126 1226 232 HOH HOH . P 5 HOH A 127 1227 233 HOH HOH . P 5 HOH A 128 1228 234 HOH HOH . P 5 HOH A 129 1229 237 HOH HOH . P 5 HOH A 130 1230 241 HOH HOH . P 5 HOH A 131 1231 243 HOH HOH . P 5 HOH A 132 1232 247 HOH HOH . P 5 HOH A 133 1233 248 HOH HOH . Q 5 HOH B 1 1101 17 HOH HOH . Q 5 HOH B 2 1102 18 HOH HOH . Q 5 HOH B 3 1103 19 HOH HOH . Q 5 HOH B 4 1104 35 HOH HOH . Q 5 HOH B 5 1105 37 HOH HOH . Q 5 HOH B 6 1106 45 HOH HOH . Q 5 HOH B 7 1107 46 HOH HOH . Q 5 HOH B 8 1108 47 HOH HOH . Q 5 HOH B 9 1109 53 HOH HOH . Q 5 HOH B 10 1110 56 HOH HOH . Q 5 HOH B 11 1111 57 HOH HOH . Q 5 HOH B 12 1112 58 HOH HOH . Q 5 HOH B 13 1113 59 HOH HOH . Q 5 HOH B 14 1114 65 HOH HOH . Q 5 HOH B 15 1115 69 HOH HOH . Q 5 HOH B 16 1116 70 HOH HOH . Q 5 HOH B 17 1117 71 HOH HOH . Q 5 HOH B 18 1118 76 HOH HOH . Q 5 HOH B 19 1119 78 HOH HOH . Q 5 HOH B 20 1120 83 HOH HOH . Q 5 HOH B 21 1121 95 HOH HOH . Q 5 HOH B 22 1122 96 HOH HOH . Q 5 HOH B 23 1123 97 HOH HOH . Q 5 HOH B 24 1124 98 HOH HOH . Q 5 HOH B 25 1125 99 HOH HOH . Q 5 HOH B 26 1126 100 HOH HOH . Q 5 HOH B 27 1127 101 HOH HOH . Q 5 HOH B 28 1128 102 HOH HOH . Q 5 HOH B 29 1129 103 HOH HOH . Q 5 HOH B 30 1130 104 HOH HOH . Q 5 HOH B 31 1131 105 HOH HOH . Q 5 HOH B 32 1132 106 HOH HOH . Q 5 HOH B 33 1133 107 HOH HOH . Q 5 HOH B 34 1134 108 HOH HOH . Q 5 HOH B 35 1135 109 HOH HOH . Q 5 HOH B 36 1136 110 HOH HOH . Q 5 HOH B 37 1137 111 HOH HOH . Q 5 HOH B 38 1138 112 HOH HOH . Q 5 HOH B 39 1139 113 HOH HOH . Q 5 HOH B 40 1140 114 HOH HOH . Q 5 HOH B 41 1141 115 HOH HOH . Q 5 HOH B 42 1142 116 HOH HOH . Q 5 HOH B 43 1143 117 HOH HOH . Q 5 HOH B 44 1144 118 HOH HOH . Q 5 HOH B 45 1145 119 HOH HOH . Q 5 HOH B 46 1146 120 HOH HOH . Q 5 HOH B 47 1147 121 HOH HOH . Q 5 HOH B 48 1148 122 HOH HOH . Q 5 HOH B 49 1149 123 HOH HOH . Q 5 HOH B 50 1150 124 HOH HOH . Q 5 HOH B 51 1151 125 HOH HOH . Q 5 HOH B 52 1152 126 HOH HOH . Q 5 HOH B 53 1153 127 HOH HOH . Q 5 HOH B 54 1154 128 HOH HOH . Q 5 HOH B 55 1155 129 HOH HOH . Q 5 HOH B 56 1156 130 HOH HOH . Q 5 HOH B 57 1157 131 HOH HOH . Q 5 HOH B 58 1158 132 HOH HOH . Q 5 HOH B 59 1159 133 HOH HOH . Q 5 HOH B 60 1160 134 HOH HOH . Q 5 HOH B 61 1161 135 HOH HOH . Q 5 HOH B 62 1162 136 HOH HOH . Q 5 HOH B 63 1163 137 HOH HOH . Q 5 HOH B 64 1164 138 HOH HOH . Q 5 HOH B 65 1165 146 HOH HOH . Q 5 HOH B 66 1166 147 HOH HOH . Q 5 HOH B 67 1167 148 HOH HOH . Q 5 HOH B 68 1168 152 HOH HOH . Q 5 HOH B 69 1169 155 HOH HOH . Q 5 HOH B 70 1170 156 HOH HOH . Q 5 HOH B 71 1171 158 HOH HOH . Q 5 HOH B 72 1172 159 HOH HOH . Q 5 HOH B 73 1173 161 HOH HOH . Q 5 HOH B 74 1174 163 HOH HOH . Q 5 HOH B 75 1175 164 HOH HOH . Q 5 HOH B 76 1176 167 HOH HOH . Q 5 HOH B 77 1177 168 HOH HOH . Q 5 HOH B 78 1178 170 HOH HOH . Q 5 HOH B 79 1179 171 HOH HOH . Q 5 HOH B 80 1180 173 HOH HOH . Q 5 HOH B 81 1181 185 HOH HOH . Q 5 HOH B 82 1182 186 HOH HOH . Q 5 HOH B 83 1183 187 HOH HOH . Q 5 HOH B 84 1184 188 HOH HOH . Q 5 HOH B 85 1185 189 HOH HOH . Q 5 HOH B 86 1186 190 HOH HOH . Q 5 HOH B 87 1187 191 HOH HOH . Q 5 HOH B 88 1188 192 HOH HOH . Q 5 HOH B 89 1189 194 HOH HOH . Q 5 HOH B 90 1190 195 HOH HOH . Q 5 HOH B 91 1191 196 HOH HOH . Q 5 HOH B 92 1192 200 HOH HOH . Q 5 HOH B 93 1193 201 HOH HOH . Q 5 HOH B 94 1194 202 HOH HOH . Q 5 HOH B 95 1195 204 HOH HOH . Q 5 HOH B 96 1196 205 HOH HOH . Q 5 HOH B 97 1197 209 HOH HOH . Q 5 HOH B 98 1198 215 HOH HOH . Q 5 HOH B 99 1199 217 HOH HOH . Q 5 HOH B 100 1200 218 HOH HOH . Q 5 HOH B 101 1201 219 HOH HOH . Q 5 HOH B 102 1202 220 HOH HOH . Q 5 HOH B 103 1203 221 HOH HOH . Q 5 HOH B 104 1204 222 HOH HOH . Q 5 HOH B 105 1205 224 HOH HOH . Q 5 HOH B 106 1206 225 HOH HOH . Q 5 HOH B 107 1207 235 HOH HOH . Q 5 HOH B 108 1208 236 HOH HOH . Q 5 HOH B 109 1209 238 HOH HOH . Q 5 HOH B 110 1210 239 HOH HOH . Q 5 HOH B 111 1211 240 HOH HOH . Q 5 HOH B 112 1212 242 HOH HOH . Q 5 HOH B 113 1213 244 HOH HOH . Q 5 HOH B 114 1214 245 HOH HOH . Q 5 HOH B 115 1215 246 HOH HOH . Q 5 HOH B 116 1216 249 HOH HOH . Q 5 HOH B 117 1217 250 HOH HOH . Q 5 HOH B 118 1218 251 HOH HOH . Q 5 HOH B 119 1219 252 HOH HOH . Q 5 HOH B 120 1220 253 HOH HOH . Q 5 HOH B 121 1221 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . C 2 35.486 2.923 20.965 1 6.78 ? C11 BTN 1001 A 1 HETATM 2 O O11 BTN . . . C 2 35.822 3.618 21.963 1 7.23 ? O11 BTN 1001 A 1 HETATM 3 O O12 BTN . . . C 2 35.231 1.69 21.08 1 8.84 ? O12 BTN 1001 A 1 HETATM 4 C C10 BTN . . . C 2 35.347 3.56 19.622 1 7.44 ? C10 BTN 1001 A 1 HETATM 5 C C9 BTN . . . C 2 34.796 4.989 19.606 1 6.24 ? C9 BTN 1001 A 1 HETATM 6 C C8 BTN . . . C 2 33.341 5.018 20.119 1 6.1 ? C8 BTN 1001 A 1 HETATM 7 C C7 BTN . . . C 2 32.749 6.418 20.154 1 6.34 ? C7 BTN 1001 A 1 HETATM 8 C C2 BTN . . . C 2 31.287 6.472 20.608 1 5.42 ? C2 BTN 1001 A 1 HETATM 9 S S1 BTN . . . C 2 30.124 5.873 19.308 1 5.89 ? S1 BTN 1001 A 1 HETATM 10 C C6 BTN . . . C 2 28.792 6.473 20.303 1 5.62 ? C6 BTN 1001 A 1 HETATM 11 C C5 BTN . . . C 2 29.216 7.859 20.835 1 5.82 ? C5 BTN 1001 A 1 HETATM 12 N N1 BTN . . . C 2 28.93 8.917 19.852 1 5.81 ? N1 BTN 1001 A 1 HETATM 13 C C3 BTN . . . C 2 30.053 9.433 19.375 1 5.2 ? C3 BTN 1001 A 1 HETATM 14 O O3 BTN . . . C 2 30.087 10.409 18.514 1 6.33 ? O3 BTN 1001 A 1 HETATM 15 N N2 BTN . . . C 2 31.138 8.91 19.937 1 5.99 ? N2 BTN 1001 A 1 HETATM 16 C C4 BTN . . . C 2 30.74 7.903 20.912 1 5.85 ? C4 BTN 1001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #