data_3WYY # _model_server_result.job_id dqD3AmoCpvBZC_lpwwYL_g _model_server_result.datetime_utc '2024-11-29 04:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 3WYY # _exptl.entry_id 3WYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.644 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-[4-({4-amino-5-cyano-6-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylamino]pyridin-2-yl}amino)-2-(cyanomethoxy)phenyl]-N-(2-methoxyethyl)prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WYY _cell.length_a 70.587 _cell.length_b 106.403 _cell.length_c 114.318 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 A,B 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -70.587 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H35 N7 O3' _chem_comp.formula_weight 541.644 _chem_comp.id O17 _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-[4-({4-amino-5-cyano-6-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylamino]pyridin-2-yl}amino)-2-(cyanomethoxy)phenyl]-N-(2-methoxyethyl)prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C14 O17 trip 235 n n C25 C20 O17 sing 236 n n C25 C16 O17 sing 237 n n C20 C19 O17 sing 238 n n C20 C21 O17 sing 239 n n C14 C13 O17 sing 240 n n C19 C18 O17 sing 241 n n N4 C16 O17 sing 242 n n N4 C15 O17 sing 243 n n C16 C17 O17 sing 244 n n C16 C24 O17 sing 245 n n C13 C15 O17 doub 246 n y C13 C12 O17 sing 247 n y C21 C22 O17 sing 248 n n C17 C18 O17 sing 249 n n C15 N5 O17 sing 250 n y N2 C12 O17 sing 251 n n C18 C23 O17 sing 252 n n C12 C11 O17 doub 253 n y C24 C22 O17 sing 254 n n C22 C23 O17 sing 255 n n N5 C10 O17 doub 256 n y C11 C10 O17 sing 257 n y C10 N1 O17 sing 258 n n N1 C9 O17 sing 259 n n C8 C9 O17 doub 260 n y C8 C7 O17 sing 261 n y C9 C26 O17 sing 262 n y C7 C6 O17 doub 263 n y C26 C27 O17 doub 264 n y C6 C27 O17 sing 265 n y C6 C5 O17 sing 266 n n C27 O2 O17 sing 267 n n C5 C4 O17 doub 268 e n C4 C3 O17 sing 269 n n O2 C28 O17 sing 270 n n C2 C1 O17 sing 271 n n C2 N O17 sing 272 n n C1 O O17 sing 273 n n C O O17 sing 274 n n N C3 O17 sing 275 n n C3 O1 O17 doub 276 n n C28 C29 O17 sing 277 n n C29 N6 O17 trip 278 n n C28 H1 O17 sing 279 n n C28 H2 O17 sing 280 n n C5 H3 O17 sing 281 n n C4 H5 O17 sing 282 n n N H7 O17 sing 283 n n C2 H8 O17 sing 284 n n C2 H9 O17 sing 285 n n C1 H10 O17 sing 286 n n C1 H11 O17 sing 287 n n C H12 O17 sing 288 n n C H13 O17 sing 289 n n C H14 O17 sing 290 n n C26 H15 O17 sing 291 n n C8 H16 O17 sing 292 n n C7 H17 O17 sing 293 n n N1 H18 O17 sing 294 n n N2 H19 O17 sing 295 n n N2 H20 O17 sing 296 n n C11 H21 O17 sing 297 n n N4 H22 O17 sing 298 n n C25 H23 O17 sing 299 n n C25 H24 O17 sing 300 n n C20 H25 O17 sing 301 n n C19 H26 O17 sing 302 n n C19 H27 O17 sing 303 n n C21 H28 O17 sing 304 n n C21 H29 O17 sing 305 n n C22 H30 O17 sing 306 n n C24 H31 O17 sing 307 n n C24 H32 O17 sing 308 n n C23 H33 O17 sing 309 n n C23 H34 O17 sing 310 n n C18 H35 O17 sing 311 n n C17 H36 O17 sing 312 n n C17 H37 O17 sing 313 n n # _atom_sites.entry_id 3WYY _atom_sites.fract_transf_matrix[1][1] 0.014167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id O17 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id O17 _pdbx_nonpoly_scheme.auth_mon_id O17 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N6 O17 . . . B 2 -32.962 -17.413 -2.269 1 66.72 ? N6 O17 901 A 1 HETATM 2 C C29 O17 . . . B 2 -33.447 -17.664 -3.299 1 67.88 ? C29 O17 901 A 1 HETATM 3 C C28 O17 . . . B 2 -34.067 -17.982 -4.601 1 67.19 ? C28 O17 901 A 1 HETATM 4 O O2 O17 . . . B 2 -33.12 -17.875 -5.678 1 63.46 ? O2 O17 901 A 1 HETATM 5 C C27 O17 . . . B 2 -33.525 -17.662 -6.984 1 60.3 ? C27 O17 901 A 1 HETATM 6 C C6 O17 . . . B 2 -33.59 -16.277 -7.534 1 60.47 ? C6 O17 901 A 1 HETATM 7 C C5 O17 . . . B 2 -33.297 -15.149 -6.623 1 62.81 ? C5 O17 901 A 1 HETATM 8 C C4 O17 . . . B 2 -34.37 -15.051 -5.828 1 68.16 ? C4 O17 901 A 1 HETATM 9 C C3 O17 . . . B 2 -34.664 -14.129 -4.718 1 72.82 ? C3 O17 901 A 1 HETATM 10 O O1 O17 . . . B 2 -33.95 -14.155 -3.727 1 73.88 ? O1 O17 901 A 1 HETATM 11 N N O17 . . . B 2 -35.738 -13.337 -4.818 1 74.03 ? N O17 901 A 1 HETATM 12 C C2 O17 . . . B 2 -35.762 -12.146 -5.656 1 73.91 ? C2 O17 901 A 1 HETATM 13 C C1 O17 . . . B 2 -36.979 -11.266 -5.368 1 76.11 ? C1 O17 901 A 1 HETATM 14 O O O17 . . . B 2 -36.576 -10.11 -4.622 1 78.16 ? O O17 901 A 1 HETATM 15 C C O17 . . . B 2 -37.357 -8.947 -4.928 1 75.27 ? C O17 901 A 1 HETATM 16 C C26 O17 . . . B 2 -33.856 -18.727 -7.823 1 56.56 ? C26 O17 901 A 1 HETATM 17 C C9 O17 . . . B 2 -34.271 -18.498 -9.139 1 53.51 ? C9 O17 901 A 1 HETATM 18 C C8 O17 . . . B 2 -34.338 -17.189 -9.643 1 54.38 ? C8 O17 901 A 1 HETATM 19 C C7 O17 . . . B 2 -34.016 -16.081 -8.852 1 57.47 ? C7 O17 901 A 1 HETATM 20 N N1 O17 . . . B 2 -34.564 -19.594 -9.892 1 50.3 ? N1 O17 901 A 1 HETATM 21 C C10 O17 . . . B 2 -35.437 -19.72 -10.941 1 46.99 ? C10 O17 901 A 1 HETATM 22 N N5 O17 . . . B 2 -35.904 -18.652 -11.654 1 43.72 ? N5 O17 901 A 1 HETATM 23 C C15 O17 . . . B 2 -36.757 -18.779 -12.706 1 42.04 ? C15 O17 901 A 1 HETATM 24 C C13 O17 . . . B 2 -37.206 -20.137 -13.103 1 42.74 ? C13 O17 901 A 1 HETATM 25 C C14 O17 . . . B 2 -38.016 -20.312 -14.089 1 43.47 ? C14 O17 901 A 1 HETATM 26 N N3 O17 . . . B 2 -38.757 -20.486 -14.964 1 43.12 ? N3 O17 901 A 1 HETATM 27 C C12 O17 . . . B 2 -36.69 -21.281 -12.329 1 42.97 ? C12 O17 901 A 1 HETATM 28 N N2 O17 . . . B 2 -37.06 -22.545 -12.642 1 43.26 ? N2 O17 901 A 1 HETATM 29 C C11 O17 . . . B 2 -35.822 -21.023 -11.277 1 44.96 ? C11 O17 901 A 1 HETATM 30 N N4 O17 . . . B 2 -37.218 -17.718 -13.422 1 39.04 ? N4 O17 901 A 1 HETATM 31 C C16 O17 . . . B 2 -36.923 -16.323 -13.147 1 37.6 ? C16 O17 901 A 1 HETATM 32 C C25 O17 . . . B 2 -37.317 -15.501 -14.387 1 37.24 ? C25 O17 901 A 1 HETATM 33 C C20 O17 . . . B 2 -37.074 -13.999 -14.148 1 36.26 ? C20 O17 901 A 1 HETATM 34 C C19 O17 . . . B 2 -35.593 -13.75 -13.84 1 35.66 ? C19 O17 901 A 1 HETATM 35 C C21 O17 . . . B 2 -37.917 -13.573 -12.939 1 36.27 ? C21 O17 901 A 1 HETATM 36 C C22 O17 . . . B 2 -37.528 -14.373 -11.686 1 36.65 ? C22 O17 901 A 1 HETATM 37 C C24 O17 . . . B 2 -37.745 -15.869 -11.931 1 36.67 ? C24 O17 901 A 1 HETATM 38 C C23 O17 . . . B 2 -36.038 -14.149 -11.402 1 36.96 ? C23 O17 901 A 1 HETATM 39 C C18 O17 . . . B 2 -35.187 -14.574 -12.612 1 37.1 ? C18 O17 901 A 1 HETATM 40 C C17 O17 . . . B 2 -35.427 -16.068 -12.893 1 37.38 ? C17 O17 901 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #