data_3WZE # _model_server_result.job_id JZx5y1XrunI8ZLF4ZfL0ww _model_server_result.datetime_utc '2024-10-10 11:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 3WZE # _exptl.entry_id 3WZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.825 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.17 _cell.angle_gamma 90 _cell.entry_id 3WZE _cell.length_a 135.921 _cell.length_b 57.357 _cell.length_c 52.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 49 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 862 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S1 _struct_conn.ptnr2_label_comp_id DTT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DTT _struct_conn.ptnr2_auth_seq_id 1203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.081 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H16 Cl F3 N4 O3' _chem_comp.formula_weight 464.825 _chem_comp.id BAX _chem_comp.mon_nstd_flag . _chem_comp.name 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Sorafenib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BAX doub 76 n y C1 C6 BAX sing 77 n y C1 H1 BAX sing 78 n n C2 C3 BAX sing 79 n y C2 N12 BAX sing 80 n n C3 C4 BAX doub 81 n y C3 H3 BAX sing 82 n n C4 C5 BAX sing 83 n y C4 H4 BAX sing 84 n n C13 N12 BAX sing 85 n n C13 N14 BAX sing 86 n n C13 O15 BAX doub 87 n n C16 C17 BAX doub 88 n y C16 C21 BAX sing 89 n y C16 N14 BAX sing 90 n n C17 C18 BAX sing 91 n y C17 H17 BAX sing 92 n n C18 C19 BAX doub 93 n y C18 H18 BAX sing 94 n n C19 C20 BAX sing 95 n y C19 O22 BAX sing 96 n n C20 C21 BAX doub 97 n y C20 H20 BAX sing 98 n n C21 H21 BAX sing 99 n n O22 C23 BAX sing 100 n n C24 C25 BAX doub 101 n y C24 C23 BAX sing 102 n y C24 H24 BAX sing 103 n n C25 N26 BAX sing 104 n y C25 H25 BAX sing 105 n n C27 C28 BAX sing 106 n y C27 N26 BAX doub 107 n y C27 C29 BAX sing 108 n n C28 C23 BAX doub 109 n y C28 H28 BAX sing 110 n n N30 C31 BAX sing 111 n n N30 C29 BAX sing 112 n n N30 H30 BAX sing 113 n n C31 H311 BAX sing 114 n n C31 H312 BAX sing 115 n n C31 H313 BAX sing 116 n n C5 C6 BAX doub 117 n y C5 CL11 BAX sing 118 n n C6 C7 BAX sing 119 n n C7 F8 BAX sing 120 n n C7 F9 BAX sing 121 n n C7 F10 BAX sing 122 n n N12 H12 BAX sing 123 n n N14 H14 BAX sing 124 n n C29 O32 BAX doub 125 n n # _atom_sites.entry_id 3WZE _atom_sites.fract_transf_matrix[1][1] 0.007357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000536 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BAX A 1 1201 1201 BAX BAX . C 3 ACT A 1 1202 1202 ACT ACT . D 4 DTT A 1 1203 1203 DTT DTT . E 5 HOH A 1 3001 3001 HOH HOH . E 5 HOH A 2 3002 3002 HOH HOH . E 5 HOH A 3 3003 3003 HOH HOH . E 5 HOH A 4 3004 3004 HOH HOH . E 5 HOH A 5 3005 3005 HOH HOH . E 5 HOH A 6 3006 3006 HOH HOH . E 5 HOH A 7 3007 3007 HOH HOH . E 5 HOH A 8 3008 3008 HOH HOH . E 5 HOH A 9 3009 3009 HOH HOH . E 5 HOH A 10 3010 3010 HOH HOH . E 5 HOH A 11 3011 3011 HOH HOH . E 5 HOH A 12 3012 3012 HOH HOH . E 5 HOH A 13 3013 3013 HOH HOH . E 5 HOH A 14 3014 3014 HOH HOH . E 5 HOH A 15 3015 3015 HOH HOH . E 5 HOH A 16 3016 3016 HOH HOH . E 5 HOH A 17 3017 3017 HOH HOH . E 5 HOH A 18 3018 3018 HOH HOH . E 5 HOH A 19 3019 3019 HOH HOH . E 5 HOH A 20 3020 3020 HOH HOH . E 5 HOH A 21 3021 3021 HOH HOH . E 5 HOH A 22 3022 3022 HOH HOH . E 5 HOH A 23 3023 3023 HOH HOH . E 5 HOH A 24 3024 3024 HOH HOH . E 5 HOH A 25 3025 3025 HOH HOH . E 5 HOH A 26 3026 3026 HOH HOH . E 5 HOH A 27 3027 3027 HOH HOH . E 5 HOH A 28 3028 3028 HOH HOH . E 5 HOH A 29 3029 3029 HOH HOH . E 5 HOH A 30 3030 3030 HOH HOH . E 5 HOH A 31 3031 3031 HOH HOH . E 5 HOH A 32 3032 3032 HOH HOH . E 5 HOH A 33 3033 3033 HOH HOH . E 5 HOH A 34 3034 3034 HOH HOH . E 5 HOH A 35 3035 3035 HOH HOH . E 5 HOH A 36 3036 3036 HOH HOH . E 5 HOH A 37 3037 3037 HOH HOH . E 5 HOH A 38 3038 3039 HOH HOH . E 5 HOH A 39 3039 3040 HOH HOH . E 5 HOH A 40 3040 3041 HOH HOH . E 5 HOH A 41 3041 3042 HOH HOH . E 5 HOH A 42 3042 3043 HOH HOH . E 5 HOH A 43 3043 3044 HOH HOH . E 5 HOH A 44 3044 3045 HOH HOH . E 5 HOH A 45 3045 3046 HOH HOH . E 5 HOH A 46 3046 3047 HOH HOH . E 5 HOH A 47 3047 3048 HOH HOH . E 5 HOH A 48 3048 3049 HOH HOH . E 5 HOH A 49 3049 3050 HOH HOH . E 5 HOH A 50 3050 3051 HOH HOH . E 5 HOH A 51 3051 3052 HOH HOH . E 5 HOH A 52 3052 3053 HOH HOH . E 5 HOH A 53 3053 3054 HOH HOH . E 5 HOH A 54 3054 3055 HOH HOH . E 5 HOH A 55 3055 3056 HOH HOH . E 5 HOH A 56 3056 3057 HOH HOH . E 5 HOH A 57 3057 3058 HOH HOH . E 5 HOH A 58 3058 3059 HOH HOH . E 5 HOH A 59 3059 3060 HOH HOH . E 5 HOH A 60 3060 3061 HOH HOH . E 5 HOH A 61 3061 3062 HOH HOH . E 5 HOH A 62 3062 3063 HOH HOH . E 5 HOH A 63 3063 3064 HOH HOH . E 5 HOH A 64 3064 3065 HOH HOH . E 5 HOH A 65 3065 3066 HOH HOH . E 5 HOH A 66 3066 3067 HOH HOH . E 5 HOH A 67 3067 3068 HOH HOH . E 5 HOH A 68 3068 3069 HOH HOH . E 5 HOH A 69 3069 3070 HOH HOH . E 5 HOH A 70 3070 3071 HOH HOH . E 5 HOH A 71 3071 3072 HOH HOH . E 5 HOH A 72 3072 3073 HOH HOH . E 5 HOH A 73 3073 3074 HOH HOH . E 5 HOH A 74 3074 3075 HOH HOH . E 5 HOH A 75 3075 3076 HOH HOH . E 5 HOH A 76 3076 3077 HOH HOH . E 5 HOH A 77 3077 3078 HOH HOH . E 5 HOH A 78 3078 3079 HOH HOH . E 5 HOH A 79 3079 3080 HOH HOH . E 5 HOH A 80 3080 3081 HOH HOH . E 5 HOH A 81 3081 3082 HOH HOH . E 5 HOH A 82 3082 3083 HOH HOH . E 5 HOH A 83 3083 3084 HOH HOH . E 5 HOH A 84 3084 3085 HOH HOH . E 5 HOH A 85 3085 3086 HOH HOH . E 5 HOH A 86 3086 3087 HOH HOH . E 5 HOH A 87 3087 3088 HOH HOH . E 5 HOH A 88 3088 3089 HOH HOH . E 5 HOH A 89 3089 3090 HOH HOH . E 5 HOH A 90 3090 3091 HOH HOH . E 5 HOH A 91 3091 3092 HOH HOH . E 5 HOH A 92 3092 3093 HOH HOH . E 5 HOH A 93 3093 3094 HOH HOH . E 5 HOH A 94 3094 3095 HOH HOH . E 5 HOH A 95 3095 3096 HOH HOH . E 5 HOH A 96 3096 3097 HOH HOH . E 5 HOH A 97 3097 3098 HOH HOH . E 5 HOH A 98 3098 3099 HOH HOH . E 5 HOH A 99 3099 3100 HOH HOH . E 5 HOH A 100 3100 3101 HOH HOH . E 5 HOH A 101 3101 3102 HOH HOH . E 5 HOH A 102 3102 3103 HOH HOH . E 5 HOH A 103 3103 3104 HOH HOH . E 5 HOH A 104 3104 3105 HOH HOH . E 5 HOH A 105 3105 3106 HOH HOH . E 5 HOH A 106 3106 3107 HOH HOH . E 5 HOH A 107 3107 3108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BAX . . . B 2 26.3 23.06 33.488 1 31.56 ? C1 BAX 1201 A 1 HETATM 2 C C2 BAX . . . B 2 26.527 22.059 34.422 1 31.5 ? C2 BAX 1201 A 1 HETATM 3 C C3 BAX . . . B 2 27.216 20.909 33.997 1 37.94 ? C3 BAX 1201 A 1 HETATM 4 C C4 BAX . . . B 2 27.657 20.72 32.683 1 35.5 ? C4 BAX 1201 A 1 HETATM 5 C C13 BAX . . . B 2 25.001 22.857 36.18 1 27.98 ? C13 BAX 1201 A 1 HETATM 6 C C16 BAX . . . B 2 23.644 23.158 38.146 1 26.24 ? C16 BAX 1201 A 1 HETATM 7 C C17 BAX . . . B 2 23.737 23.562 39.463 1 29 ? C17 BAX 1201 A 1 HETATM 8 C C18 BAX . . . B 2 22.62 24.106 40.091 1 29.57 ? C18 BAX 1201 A 1 HETATM 9 C C19 BAX . . . B 2 21.419 24.26 39.45 1 29.38 ? C19 BAX 1201 A 1 HETATM 10 C C20 BAX . . . B 2 21.31 23.874 38.147 1 31.31 ? C20 BAX 1201 A 1 HETATM 11 C C21 BAX . . . B 2 22.427 23.325 37.534 1 29.02 ? C21 BAX 1201 A 1 HETATM 12 O O22 BAX . . . B 2 20.298 24.684 40.144 1 34.12 ? O22 BAX 1201 A 1 HETATM 13 C C24 BAX . . . B 2 20.809 27.098 39.944 1 28.7 ? C24 BAX 1201 A 1 HETATM 14 C C25 BAX . . . B 2 20.247 28.376 40.043 1 29.56 ? C25 BAX 1201 A 1 HETATM 15 C C27 BAX . . . B 2 18.172 27.535 40.781 1 30.06 ? C27 BAX 1201 A 1 HETATM 16 C C28 BAX . . . B 2 18.648 26.212 40.667 1 28.65 ? C28 BAX 1201 A 1 HETATM 17 N N30 BAX . . . B 2 16.382 29.08 41.38 1 37.04 ? N30 BAX 1201 A 1 HETATM 18 C C31 BAX . . . B 2 15.047 29.402 41.852 1 38.9 ? C31 BAX 1201 A 1 HETATM 19 C C5 BAX . . . B 2 27.42 21.742 31.745 1 33.51 ? C5 BAX 1201 A 1 HETATM 20 C C6 BAX . . . B 2 26.72 22.952 32.185 1 27.5 ? C6 BAX 1201 A 1 HETATM 21 C C7 BAX . . . B 2 26.433 24.079 31.205 1 36.87 ? C7 BAX 1201 A 1 HETATM 22 F F8 BAX . . . B 2 25.643 23.689 30.251 1 39.65 ? F8 BAX 1201 A 1 HETATM 23 F F9 BAX . . . B 2 25.904 25.109 31.758 1 37.84 ? F9 BAX 1201 A 1 HETATM 24 F F10 BAX . . . B 2 27.559 24.5 30.723 1 36.35 ? F10 BAX 1201 A 1 HETATM 25 CL CL11 BAX . . . B 2 27.936 21.587 30.052 1 50.98 ? CL11 BAX 1201 A 1 HETATM 26 N N12 BAX . . . B 2 26.047 22.111 35.728 1 26.26 ? N12 BAX 1201 A 1 HETATM 27 N N14 BAX . . . B 2 24.768 22.731 37.5 1 25.84 ? N14 BAX 1201 A 1 HETATM 28 O O15 BAX . . . B 2 24.371 23.573 35.436 1 28.48 ? O15 BAX 1201 A 1 HETATM 29 C C23 BAX . . . B 2 19.957 26.02 40.219 1 33.06 ? C23 BAX 1201 A 1 HETATM 30 N N26 BAX . . . B 2 18.976 28.565 40.448 1 25.85 ? N26 BAX 1201 A 1 HETATM 31 C C29 BAX . . . B 2 16.785 27.804 41.237 1 29.38 ? C29 BAX 1201 A 1 HETATM 32 O O32 BAX . . . B 2 16.064 26.85 41.479 1 36.85 ? O32 BAX 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #