data_3WZE
#
_model_server_result.job_id            zLMKqfsKOF9RAEObuR6h7A 
_model_server_result.datetime_utc      '2024-10-10 11:24:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wze 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1203}' 
#
_entry.id    3WZE 
#
_exptl.entry_id    3WZE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.17 
_cell.angle_gamma         90 
_cell.entry_id            3WZE 
_cell.length_a            135.921 
_cell.length_b            57.357 
_cell.length_c            52.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WZE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             49 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              862 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            S1 
_struct_conn.ptnr2_label_comp_id            DTT 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             DTT 
_struct_conn.ptnr2_auth_seq_id              1203 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.081 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 139 n n 
S1 HS1 DTT sing 140 n n 
C1 C2 DTT sing 141 n n 
C1 H11 DTT sing 142 n n 
C1 H12 DTT sing 143 n n 
C2 O2 DTT sing 144 n n 
C2 C3 DTT sing 145 n n 
C2 H2 DTT sing 146 n n 
O2 HO2 DTT sing 147 n n 
C3 O3 DTT sing 148 n n 
C3 C4 DTT sing 149 n n 
C3 H3 DTT sing 150 n n 
O3 HO3 DTT sing 151 n n 
C4 S4 DTT sing 152 n n 
C4 H41 DTT sing 153 n n 
C4 H42 DTT sing 154 n n 
S4 HS2 DTT sing 155 n n 
#
_atom_sites.entry_id                     3WZE 
_atom_sites.fract_transf_matrix[1][1]    0.007357 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000536 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017435 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BAX A 1 1201 1201 BAX BAX . 
C 3 ACT A 1 1202 1202 ACT ACT . 
D 4 DTT A 1 1203 1203 DTT DTT . 
E 5 HOH A 1 3001 3001 HOH HOH . 
E 5 HOH A 2 3002 3002 HOH HOH . 
E 5 HOH A 3 3003 3003 HOH HOH . 
E 5 HOH A 4 3004 3004 HOH HOH . 
E 5 HOH A 5 3005 3005 HOH HOH . 
E 5 HOH A 6 3006 3006 HOH HOH . 
E 5 HOH A 7 3007 3007 HOH HOH . 
E 5 HOH A 8 3008 3008 HOH HOH . 
E 5 HOH A 9 3009 3009 HOH HOH . 
E 5 HOH A 10 3010 3010 HOH HOH . 
E 5 HOH A 11 3011 3011 HOH HOH . 
E 5 HOH A 12 3012 3012 HOH HOH . 
E 5 HOH A 13 3013 3013 HOH HOH . 
E 5 HOH A 14 3014 3014 HOH HOH . 
E 5 HOH A 15 3015 3015 HOH HOH . 
E 5 HOH A 16 3016 3016 HOH HOH . 
E 5 HOH A 17 3017 3017 HOH HOH . 
E 5 HOH A 18 3018 3018 HOH HOH . 
E 5 HOH A 19 3019 3019 HOH HOH . 
E 5 HOH A 20 3020 3020 HOH HOH . 
E 5 HOH A 21 3021 3021 HOH HOH . 
E 5 HOH A 22 3022 3022 HOH HOH . 
E 5 HOH A 23 3023 3023 HOH HOH . 
E 5 HOH A 24 3024 3024 HOH HOH . 
E 5 HOH A 25 3025 3025 HOH HOH . 
E 5 HOH A 26 3026 3026 HOH HOH . 
E 5 HOH A 27 3027 3027 HOH HOH . 
E 5 HOH A 28 3028 3028 HOH HOH . 
E 5 HOH A 29 3029 3029 HOH HOH . 
E 5 HOH A 30 3030 3030 HOH HOH . 
E 5 HOH A 31 3031 3031 HOH HOH . 
E 5 HOH A 32 3032 3032 HOH HOH . 
E 5 HOH A 33 3033 3033 HOH HOH . 
E 5 HOH A 34 3034 3034 HOH HOH . 
E 5 HOH A 35 3035 3035 HOH HOH . 
E 5 HOH A 36 3036 3036 HOH HOH . 
E 5 HOH A 37 3037 3037 HOH HOH . 
E 5 HOH A 38 3038 3039 HOH HOH . 
E 5 HOH A 39 3039 3040 HOH HOH . 
E 5 HOH A 40 3040 3041 HOH HOH . 
E 5 HOH A 41 3041 3042 HOH HOH . 
E 5 HOH A 42 3042 3043 HOH HOH . 
E 5 HOH A 43 3043 3044 HOH HOH . 
E 5 HOH A 44 3044 3045 HOH HOH . 
E 5 HOH A 45 3045 3046 HOH HOH . 
E 5 HOH A 46 3046 3047 HOH HOH . 
E 5 HOH A 47 3047 3048 HOH HOH . 
E 5 HOH A 48 3048 3049 HOH HOH . 
E 5 HOH A 49 3049 3050 HOH HOH . 
E 5 HOH A 50 3050 3051 HOH HOH . 
E 5 HOH A 51 3051 3052 HOH HOH . 
E 5 HOH A 52 3052 3053 HOH HOH . 
E 5 HOH A 53 3053 3054 HOH HOH . 
E 5 HOH A 54 3054 3055 HOH HOH . 
E 5 HOH A 55 3055 3056 HOH HOH . 
E 5 HOH A 56 3056 3057 HOH HOH . 
E 5 HOH A 57 3057 3058 HOH HOH . 
E 5 HOH A 58 3058 3059 HOH HOH . 
E 5 HOH A 59 3059 3060 HOH HOH . 
E 5 HOH A 60 3060 3061 HOH HOH . 
E 5 HOH A 61 3061 3062 HOH HOH . 
E 5 HOH A 62 3062 3063 HOH HOH . 
E 5 HOH A 63 3063 3064 HOH HOH . 
E 5 HOH A 64 3064 3065 HOH HOH . 
E 5 HOH A 65 3065 3066 HOH HOH . 
E 5 HOH A 66 3066 3067 HOH HOH . 
E 5 HOH A 67 3067 3068 HOH HOH . 
E 5 HOH A 68 3068 3069 HOH HOH . 
E 5 HOH A 69 3069 3070 HOH HOH . 
E 5 HOH A 70 3070 3071 HOH HOH . 
E 5 HOH A 71 3071 3072 HOH HOH . 
E 5 HOH A 72 3072 3073 HOH HOH . 
E 5 HOH A 73 3073 3074 HOH HOH . 
E 5 HOH A 74 3074 3075 HOH HOH . 
E 5 HOH A 75 3075 3076 HOH HOH . 
E 5 HOH A 76 3076 3077 HOH HOH . 
E 5 HOH A 77 3077 3078 HOH HOH . 
E 5 HOH A 78 3078 3079 HOH HOH . 
E 5 HOH A 79 3079 3080 HOH HOH . 
E 5 HOH A 80 3080 3081 HOH HOH . 
E 5 HOH A 81 3081 3082 HOH HOH . 
E 5 HOH A 82 3082 3083 HOH HOH . 
E 5 HOH A 83 3083 3084 HOH HOH . 
E 5 HOH A 84 3084 3085 HOH HOH . 
E 5 HOH A 85 3085 3086 HOH HOH . 
E 5 HOH A 86 3086 3087 HOH HOH . 
E 5 HOH A 87 3087 3088 HOH HOH . 
E 5 HOH A 88 3088 3089 HOH HOH . 
E 5 HOH A 89 3089 3090 HOH HOH . 
E 5 HOH A 90 3090 3091 HOH HOH . 
E 5 HOH A 91 3091 3092 HOH HOH . 
E 5 HOH A 92 3092 3093 HOH HOH . 
E 5 HOH A 93 3093 3094 HOH HOH . 
E 5 HOH A 94 3094 3095 HOH HOH . 
E 5 HOH A 95 3095 3096 HOH HOH . 
E 5 HOH A 96 3096 3097 HOH HOH . 
E 5 HOH A 97 3097 3098 HOH HOH . 
E 5 HOH A 98 3098 3099 HOH HOH . 
E 5 HOH A 99 3099 3100 HOH HOH . 
E 5 HOH A 100 3100 3101 HOH HOH . 
E 5 HOH A 101 3101 3102 HOH HOH . 
E 5 HOH A 102 3102 3103 HOH HOH . 
E 5 HOH A 103 3103 3104 HOH HOH . 
E 5 HOH A 104 3104 3105 HOH HOH . 
E 5 HOH A 105 3105 3106 HOH HOH . 
E 5 HOH A 106 3106 3107 HOH HOH . 
E 5 HOH A 107 3107 3108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . D 4 25.635 34.335 54.483 1 58.84 ? S1 DTT 1203 A 1 
HETATM 2 C C1 DTT . . . D 4 25.762 33.784 56.181 1 62.83 ? C1 DTT 1203 A 1 
HETATM 3 C C2 DTT . . . D 4 24.38 33.464 56.706 1 60.98 ? C2 DTT 1203 A 1 
HETATM 4 O O2 DTT . . . D 4 23.871 34.672 57.259 1 84.34 ? O2 DTT 1203 A 1 
HETATM 5 C C3 DTT . . . D 4 24.445 32.395 57.781 1 81.75 ? C3 DTT 1203 A 1 
HETATM 6 O O3 DTT . . . D 4 25.324 32.657 58.775 0 82.44 ? O3 DTT 1203 A 1 
HETATM 7 C C4 DTT . . . D 4 23.063 32.213 58.404 0 81.57 ? C4 DTT 1203 A 1 
HETATM 8 S S4 DTT . . . D 4 22.714 33.443 59.686 0 84.62 ? S4 DTT 1203 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           8 
#