data_3WZK
#
_model_server_result.job_id            PcJ3_YwmAwo3wHkTweDLUQ 
_model_server_result.datetime_utc      '2025-01-11 19:04:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wzk 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    3WZK 
#
_exptl.entry_id    3WZK 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              389.473 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-cyclopropyl-4-{8-[(thiophen-2-ylmethyl)amino]imidazo[1,2-a]pyrazin-3-yl}benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WZK 
_cell.length_a            70.82 
_cell.length_b            109.35 
_cell.length_c            113.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3WZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -109.35 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H19 N5 O S' 
_chem_comp.formula_weight    389.473 
_chem_comp.id                O23 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-cyclopropyl-4-{8-[(thiophen-2-ylmethyl)amino]imidazo[1,2-a]pyrazin-3-yl}benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C1 O23 sing 237 n n 
C3 C2 O23 sing 238 n n 
C1 C2 O23 sing 239 n n 
C1 N O23 sing 240 n n 
N C O23 sing 241 n n 
O C O23 doub 242 n n 
C C4 O23 sing 243 n n 
C4 C9 O23 doub 244 n y 
C4 C5 O23 sing 245 n y 
C9 C8 O23 sing 246 n y 
C5 C6 O23 doub 247 n y 
C8 C7 O23 doub 248 n y 
C6 C7 O23 sing 249 n y 
C7 C10 O23 sing 250 n n 
C10 N2 O23 sing 251 n y 
C10 C11 O23 doub 252 n y 
C13 N2 O23 sing 253 n y 
C13 C14 O23 doub 254 n y 
N2 C12 O23 sing 255 n y 
C11 N1 O23 sing 256 n y 
C14 N3 O23 sing 257 n y 
C12 N1 O23 doub 258 n y 
C12 C15 O23 sing 259 n y 
N3 C15 O23 doub 260 n y 
C15 N4 O23 sing 261 n n 
N4 C16 O23 sing 262 n n 
C16 C17 O23 sing 263 n n 
C17 C18 O23 doub 264 n y 
C17 S O23 sing 265 n y 
C18 C19 O23 sing 266 n y 
S C20 O23 sing 267 n y 
C19 C20 O23 doub 268 n y 
N H1 O23 sing 269 n n 
C1 H2 O23 sing 270 n n 
C3 H3 O23 sing 271 n n 
C3 H4 O23 sing 272 n n 
C2 H5 O23 sing 273 n n 
C2 H6 O23 sing 274 n n 
C9 H7 O23 sing 275 n n 
C8 H8 O23 sing 276 n n 
C6 H9 O23 sing 277 n n 
C5 H10 O23 sing 278 n n 
C13 H11 O23 sing 279 n n 
C14 H12 O23 sing 280 n n 
C11 H13 O23 sing 281 n n 
N4 H14 O23 sing 282 n n 
C16 H15 O23 sing 283 n n 
C16 H16 O23 sing 284 n n 
C20 H17 O23 sing 285 n n 
C19 H18 O23 sing 286 n n 
C18 H19 O23 sing 287 n n 
#
_atom_sites.entry_id                     3WZK 
_atom_sites.fract_transf_matrix[1][1]    0.01412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 900 900 CL CL . 
C 3 O23 A 1 901 901 O23 O23 . 
D 4 HOH A 1 1001 1001 HOH HOH . 
D 4 HOH A 2 1002 1002 HOH HOH . 
D 4 HOH A 3 1003 1003 HOH HOH . 
D 4 HOH A 4 1004 1004 HOH HOH . 
D 4 HOH A 5 1005 1005 HOH HOH . 
D 4 HOH A 6 1006 1006 HOH HOH . 
D 4 HOH A 7 1007 1007 HOH HOH . 
D 4 HOH A 8 1008 1008 HOH HOH . 
D 4 HOH A 9 1009 1009 HOH HOH . 
D 4 HOH A 10 1010 1010 HOH HOH . 
D 4 HOH A 11 1011 1011 HOH HOH . 
D 4 HOH A 12 1012 1012 HOH HOH . 
D 4 HOH A 13 1013 1013 HOH HOH . 
D 4 HOH A 14 1014 1014 HOH HOH . 
D 4 HOH A 15 1015 1015 HOH HOH . 
D 4 HOH A 16 1016 1016 HOH HOH . 
D 4 HOH A 17 1017 1017 HOH HOH . 
D 4 HOH A 18 1018 1018 HOH HOH . 
D 4 HOH A 19 1019 1019 HOH HOH . 
D 4 HOH A 20 1020 1020 HOH HOH . 
D 4 HOH A 21 1021 1021 HOH HOH . 
D 4 HOH A 22 1022 1022 HOH HOH . 
D 4 HOH A 23 1023 1023 HOH HOH . 
D 4 HOH A 24 1024 1024 HOH HOH . 
D 4 HOH A 25 1025 1025 HOH HOH . 
D 4 HOH A 26 1026 1026 HOH HOH . 
D 4 HOH A 27 1027 1027 HOH HOH . 
D 4 HOH A 28 1028 1028 HOH HOH . 
D 4 HOH A 29 1029 1029 HOH HOH . 
D 4 HOH A 30 1030 1030 HOH HOH . 
D 4 HOH A 31 1031 1031 HOH HOH . 
D 4 HOH A 32 1032 1032 HOH HOH . 
D 4 HOH A 33 1033 1033 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O O23 . . . C 3 5.313 -34.404 -16.548 1 54.45 ? O O23 901 A 1 
HETATM 2 C C O23 . . . C 3 4.252 -33.788 -16.498 1 51.2 ? C O23 901 A 1 
HETATM 3 N N O23 . . . C 3 3.79 -33.134 -17.571 1 47.57 ? N O23 901 A 1 
HETATM 4 C C1 O23 . . . C 3 4.62 -33.047 -18.765 1 49.62 ? C1 O23 901 A 1 
HETATM 5 C C3 O23 . . . C 3 4.278 -31.832 -19.625 1 46.66 ? C3 O23 901 A 1 
HETATM 6 C C2 O23 . . . C 3 5.478 -31.793 -18.68 1 47.84 ? C2 O23 901 A 1 
HETATM 7 C C4 O23 . . . C 3 3.476 -33.777 -15.205 1 48.05 ? C4 O23 901 A 1 
HETATM 8 C C9 O23 . . . C 3 2.679 -32.68 -14.873 1 45.94 ? C9 O23 901 A 1 
HETATM 9 C C8 O23 . . . C 3 1.962 -32.674 -13.669 1 46.82 ? C8 O23 901 A 1 
HETATM 10 C C7 O23 . . . C 3 2.029 -33.758 -12.792 1 47.69 ? C7 O23 901 A 1 
HETATM 11 C C6 O23 . . . C 3 2.844 -34.843 -13.122 1 44.34 ? C6 O23 901 A 1 
HETATM 12 C C5 O23 . . . C 3 3.557 -34.861 -14.327 1 43.45 ? C5 O23 901 A 1 
HETATM 13 C C10 O23 . . . C 3 1.243 -33.692 -11.512 1 53.2 ? C10 O23 901 A 1 
HETATM 14 N N2 O23 . . . C 3 0.705 -34.813 -10.979 1 53.17 ? N2 O23 901 A 1 
HETATM 15 C C13 O23 . . . C 3 0.69 -36.128 -11.317 1 57.88 ? C13 O23 901 A 1 
HETATM 16 C C14 O23 . . . C 3 0.026 -37.087 -10.524 1 58.9 ? C14 O23 901 A 1 
HETATM 17 N N3 O23 . . . C 3 -0.626 -36.736 -9.388 1 56.57 ? N3 O23 901 A 1 
HETATM 18 C C15 O23 . . . C 3 -0.637 -35.436 -9.007 1 58.98 ? C15 O23 901 A 1 
HETATM 19 C C12 O23 . . . C 3 0.064 -34.421 -9.856 1 56.43 ? C12 O23 901 A 1 
HETATM 20 N N1 O23 . . . C 3 0.185 -33.079 -9.704 1 57.54 ? N1 O23 901 A 1 
HETATM 21 C C11 O23 . . . C 3 0.923 -32.593 -10.731 1 53.54 ? C11 O23 901 A 1 
HETATM 22 N N4 O23 . . . C 3 -1.274 -35.014 -7.894 1 65.33 ? N4 O23 901 A 1 
HETATM 23 C C16 O23 . . . C 3 -1.905 -35.934 -6.969 1 73.3 ? C16 O23 901 A 1 
HETATM 24 C C17 O23 . . . C 3 -0.914 -36.426 -5.937 1 74.18 ? C17 O23 901 A 1 
HETATM 25 S S O23 . . . C 3 -0.275 -35.242 -4.835 1 78.42 ? S O23 901 A 1 
HETATM 26 C C20 O23 . . . C 3 0.715 -36.382 -3.976 1 75.25 ? C20 O23 901 A 1 
HETATM 27 C C19 O23 . . . C 3 0.519 -37.631 -4.577 1 74.19 ? C19 O23 901 A 1 
HETATM 28 C C18 O23 . . . C 3 -0.372 -37.676 -5.657 1 68.4 ? C18 O23 901 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#