data_3X03 # _model_server_result.job_id V04EhjUhTBthIB_eWqaH4A _model_server_result.datetime_utc '2024-11-14 07:11:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3X03 # _exptl.entry_id 3X03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X03 _cell.length_a 108.637 _cell.length_b 182.98 _cell.length_c 105.999 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3X03 _atom_sites.fract_transf_matrix[1][1] 0.009205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 501 501 ANP ANP . D 2 ANP A 1 502 502 ANP ANP . E 2 ANP B 1 501 501 ANP ANP . F 3 HOH A 1 601 601 HOH HOH . F 3 HOH A 2 602 602 HOH HOH . F 3 HOH A 3 603 603 HOH HOH . F 3 HOH A 4 604 604 HOH HOH . F 3 HOH A 5 605 605 HOH HOH . F 3 HOH A 6 606 606 HOH HOH . F 3 HOH A 7 607 607 HOH HOH . F 3 HOH A 8 608 608 HOH HOH . F 3 HOH A 9 609 609 HOH HOH . F 3 HOH A 10 610 610 HOH HOH . F 3 HOH A 11 611 611 HOH HOH . G 3 HOH B 1 601 601 HOH HOH . G 3 HOH B 2 602 602 HOH HOH . G 3 HOH B 3 603 603 HOH HOH . G 3 HOH B 4 604 604 HOH HOH . G 3 HOH B 5 605 605 HOH HOH . G 3 HOH B 6 606 606 HOH HOH . G 3 HOH B 7 607 607 HOH HOH . G 3 HOH B 8 608 608 HOH HOH . G 3 HOH B 9 609 609 HOH HOH . G 3 HOH B 10 610 610 HOH HOH . G 3 HOH B 11 611 611 HOH HOH . G 3 HOH B 12 612 612 HOH HOH . G 3 HOH B 13 613 613 HOH HOH . G 3 HOH B 14 614 614 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 43.432 65.563 -8.876 1 221.79 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . C 2 42.215 64.719 -8.849 1 168.11 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . C 2 43.137 66.91 -9.563 1 125.4 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . C 2 43.821 65.915 -7.43 1 117.59 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . C 2 44.449 63.247 -9.987 1 250.93 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . C 2 42.937 63.006 -10.196 1 158.09 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . C 2 45.158 62.84 -11.303 1 93.1 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . C 2 44.721 64.843 -9.614 1 94.07 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . C 2 44.726 62.336 -7.269 1 271.07 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . C 2 44.06 63.652 -7.763 1 164.09 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . C 2 43.132 62.044 -6.943 1 153.55 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . C 2 45.091 62.348 -8.894 1 167.48 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . C 2 45.404 63.54 -6.369 1 182.95 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . C 2 44.74 64.016 -5.246 1 182.47 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . C 2 44.19 62.776 -4.35 1 127.83 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . C 2 44.584 61.403 -4.634 1 120.73 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . C 2 43.703 62.863 -2.881 1 121.53 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . C 2 42.6 63.617 -2.722 1 124.56 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . C 2 43.404 61.462 -2.585 1 116.37 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . C 2 42.045 61.395 -2.464 1 125.01 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . C 2 43.9 60.645 -3.729 1 102.51 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . C 2 44.754 59.59 -3.37 1 80.53 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . C 2 45.713 59.163 -4.145 1 72.71 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . C 2 46.297 58.153 -3.571 1 83.18 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . C 2 45.725 57.912 -2.414 1 87.53 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . C 2 45.918 57.006 -1.435 1 69.58 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . C 2 46.941 56.066 -1.593 1 80.2 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . C 2 45.172 56.984 -0.372 1 71.75 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . C 2 44.196 57.852 -0.211 1 85.83 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . C 2 43.972 58.765 -1.153 1 89.66 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . C 2 44.712 58.817 -2.256 1 89.04 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #