data_3X0B
#
_model_server_result.job_id            R9eh402UI_0ob7kQY5yYkA 
_model_server_result.datetime_utc      '2025-06-30 05:06:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3x0b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    3X0B 
#
_exptl.entry_id    3X0B 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3X0B 
_cell.length_a            108.583 
_cell.length_b            182.143 
_cell.length_c            107.198 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3X0B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3X0B 
_atom_sites.fract_transf_matrix[1][1]    0.00921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 501 501 AMP AMP . 
D 2 AMP A 1 502 502 AMP AMP . 
E 2 AMP A 1 503 503 AMP AMP . 
F 2 AMP B 1 501 501 AMP AMP . 
G 3 HOH A 1 601 601 HOH HOH . 
G 3 HOH A 2 602 602 HOH HOH . 
G 3 HOH A 3 603 603 HOH HOH . 
G 3 HOH A 4 604 604 HOH HOH . 
G 3 HOH A 5 605 605 HOH HOH . 
G 3 HOH A 6 606 606 HOH HOH . 
G 3 HOH A 7 607 607 HOH HOH . 
G 3 HOH A 8 608 608 HOH HOH . 
G 3 HOH A 9 609 609 HOH HOH . 
G 3 HOH A 10 610 610 HOH HOH . 
G 3 HOH A 11 611 611 HOH HOH . 
G 3 HOH A 12 612 612 HOH HOH . 
G 3 HOH A 13 613 613 HOH HOH . 
G 3 HOH A 14 614 614 HOH HOH . 
G 3 HOH A 15 615 615 HOH HOH . 
G 3 HOH A 16 616 616 HOH HOH . 
G 3 HOH A 17 617 617 HOH HOH . 
G 3 HOH A 18 618 618 HOH HOH . 
G 3 HOH A 19 619 619 HOH HOH . 
G 3 HOH A 20 620 620 HOH HOH . 
G 3 HOH A 21 621 621 HOH HOH . 
H 3 HOH B 1 601 601 HOH HOH . 
H 3 HOH B 2 602 602 HOH HOH . 
H 3 HOH B 3 603 603 HOH HOH . 
H 3 HOH B 4 604 604 HOH HOH . 
H 3 HOH B 5 605 605 HOH HOH . 
H 3 HOH B 6 606 606 HOH HOH . 
H 3 HOH B 7 607 607 HOH HOH . 
H 3 HOH B 8 608 608 HOH HOH . 
H 3 HOH B 9 609 609 HOH HOH . 
H 3 HOH B 10 610 610 HOH HOH . 
H 3 HOH B 11 611 611 HOH HOH . 
H 3 HOH B 12 612 612 HOH HOH . 
H 3 HOH B 13 613 613 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . E 2 47.963 47.555 -23.386 1 65.27 ? P AMP 503 A 1 
HETATM 2 O O1P AMP . . . E 2 46.717 48.293 -23.422 1 56.01 ? O1P AMP 503 A 1 
HETATM 3 O O2P AMP . . . E 2 48.551 47.177 -24.628 1 75.04 ? O2P AMP 503 A 1 
HETATM 4 O O3P AMP . . . E 2 48.129 46.378 -22.562 1 90.93 ? O3P AMP 503 A 1 
HETATM 5 O O5' AMP . . . E 2 48.932 48.578 -22.783 1 58.57 ? O5' AMP 503 A 1 
HETATM 6 C C5' AMP . . . E 2 48.523 49.898 -22.578 1 66.87 ? C5' AMP 503 A 1 
HETATM 7 C C4' AMP . . . E 2 49.726 50.799 -22.362 1 62.97 ? C4' AMP 503 A 1 
HETATM 8 O O4' AMP . . . E 2 50.702 50.15 -21.582 1 69.37 ? O4' AMP 503 A 1 
HETATM 9 C C3' AMP . . . E 2 50.437 51.105 -23.627 1 66.09 ? C3' AMP 503 A 1 
HETATM 10 O O3' AMP . . . E 2 50.939 52.396 -23.509 1 71.76 ? O3' AMP 503 A 1 
HETATM 11 C C2' AMP . . . E 2 51.521 50.09 -23.653 1 66.28 ? C2' AMP 503 A 1 
HETATM 12 O O2' AMP . . . E 2 52.558 50.433 -24.545 1 68.25 ? O2' AMP 503 A 1 
HETATM 13 C C1' AMP . . . E 2 51.934 50.025 -22.229 1 68.63 ? C1' AMP 503 A 1 
HETATM 14 N N9 AMP . . . E 2 52.541 48.725 -22.019 1 58.77 ? N9 AMP 503 A 1 
HETATM 15 C C8 AMP . . . E 2 51.898 47.598 -22.021 1 54.38 ? C8 AMP 503 A 1 
HETATM 16 N N7 AMP . . . E 2 52.703 46.567 -21.835 1 55.54 ? N7 AMP 503 A 1 
HETATM 17 C C5 AMP . . . E 2 53.897 47.041 -21.726 1 43.35 ? C5 AMP 503 A 1 
HETATM 18 C C6 AMP . . . E 2 55.179 46.461 -21.504 1 58.17 ? C6 AMP 503 A 1 
HETATM 19 N N6 AMP . . . E 2 55.333 45.163 -21.369 1 66.65 ? N6 AMP 503 A 1 
HETATM 20 N N1 AMP . . . E 2 56.198 47.253 -21.426 1 71.48 ? N1 AMP 503 A 1 
HETATM 21 C C2 AMP . . . E 2 56.042 48.553 -21.556 1 75.12 ? C2 AMP 503 A 1 
HETATM 22 N N3 AMP . . . E 2 54.884 49.144 -21.757 1 64.86 ? N3 AMP 503 A 1 
HETATM 23 C C4 AMP . . . E 2 53.784 48.449 -21.842 1 45.55 ? C4 AMP 503 A 1 
HETATM 24 H "H5'1" AMP . . . E 2 47.888 49.938 -21.699 1 80.05 ? "H5'1" AMP 503 A 1 
HETATM 25 H "H5'2" AMP . . . E 2 47.929 50.244 -23.421 1 80.05 ? "H5'2" AMP 503 A 1 
HETATM 26 H H4' AMP . . . E 2 49.415 51.736 -21.892 1 75.37 ? H4' AMP 503 A 1 
HETATM 27 H H3' AMP . . . E 2 49.8 51.012 -24.509 1 79.11 ? H3' AMP 503 A 1 
HETATM 28 H HO3' AMP . . . E 2 51.649 52.509 -24.151 1 85.92 ? HO3' AMP 503 A 1 
HETATM 29 H H2' AMP . . . E 2 51.091 49.117 -23.909 1 79.34 ? H2' AMP 503 A 1 
HETATM 30 H HO2' AMP . . . E 2 52.257 50.351 -25.458 1 81.71 ? HO2' AMP 503 A 1 
HETATM 31 H H1' AMP . . . E 2 52.612 50.841 -21.976 1 82.17 ? H1' AMP 503 A 1 
HETATM 32 H H8 AMP . . . E 2 50.845 47.488 -22.151 1 65.07 ? H8 AMP 503 A 1 
HETATM 33 H HN61 AMP . . . E 2 56.253 44.786 -21.216 1 79.79 ? HN61 AMP 503 A 1 
HETATM 34 H HN62 AMP . . . E 2 54.535 44.554 -21.426 1 79.79 ? HN62 AMP 503 A 1 
HETATM 35 H H2 AMP . . . E 2 56.92 49.177 -21.491 1 89.95 ? H2 AMP 503 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#