data_3X0C # _model_server_result.job_id 66g65SZhiKq5oHZev2vUGA _model_server_result.datetime_utc '2024-11-13 11:45:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 3X0C # _exptl.entry_id 3X0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X0C _cell.length_a 109.102 _cell.length_b 183.392 _cell.length_c 106.536 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 3X0C _atom_sites.fract_transf_matrix[1][1] 0.009166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 501 501 5GP 5GP . D 2 5GP A 1 502 502 5GP 5GP . E 2 5GP A 1 503 503 5GP 5GP . F 2 5GP B 1 501 501 5GP 5GP . G 3 HOH A 1 601 601 HOH HOH . G 3 HOH A 2 602 602 HOH HOH . G 3 HOH A 3 603 603 HOH HOH . G 3 HOH A 4 604 604 HOH HOH . G 3 HOH A 5 605 605 HOH HOH . G 3 HOH A 6 606 606 HOH HOH . G 3 HOH A 7 607 607 HOH HOH . G 3 HOH A 8 608 608 HOH HOH . G 3 HOH A 9 609 609 HOH HOH . G 3 HOH A 10 610 610 HOH HOH . G 3 HOH A 11 611 611 HOH HOH . G 3 HOH A 12 612 612 HOH HOH . G 3 HOH A 13 613 613 HOH HOH . G 3 HOH A 14 614 614 HOH HOH . G 3 HOH A 15 615 615 HOH HOH . G 3 HOH A 16 616 616 HOH HOH . G 3 HOH A 17 617 617 HOH HOH . G 3 HOH A 18 618 618 HOH HOH . G 3 HOH A 19 619 619 HOH HOH . G 3 HOH A 20 620 620 HOH HOH . G 3 HOH A 21 621 621 HOH HOH . G 3 HOH A 22 622 622 HOH HOH . H 3 HOH B 1 601 601 HOH HOH . H 3 HOH B 2 602 602 HOH HOH . H 3 HOH B 3 603 603 HOH HOH . H 3 HOH B 4 604 604 HOH HOH . H 3 HOH B 5 605 605 HOH HOH . H 3 HOH B 6 606 606 HOH HOH . H 3 HOH B 7 607 607 HOH HOH . H 3 HOH B 8 608 608 HOH HOH . H 3 HOH B 9 609 609 HOH HOH . H 3 HOH B 10 610 610 HOH HOH . H 3 HOH B 11 611 611 HOH HOH . H 3 HOH B 12 612 612 HOH HOH . H 3 HOH B 13 613 613 HOH HOH . H 3 HOH B 14 614 614 HOH HOH . H 3 HOH B 15 615 615 HOH HOH . H 3 HOH B 16 616 616 HOH HOH . H 3 HOH B 17 617 617 HOH HOH . H 3 HOH B 18 618 618 HOH HOH . H 3 HOH B 19 619 619 HOH HOH . H 3 HOH B 20 620 620 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . E 2 59.93 55.157 -27.249 1 207.64 ? P 5GP 503 A 1 HETATM 2 O O1P 5GP . . . E 2 59.432 56.427 -26.611 1 203.27 ? O1P 5GP 503 A 1 HETATM 3 O O2P 5GP . . . E 2 61.156 54.574 -26.592 1 204.2 ? O2P 5GP 503 A 1 HETATM 4 O O3P 5GP . . . E 2 59.966 55.21 -28.753 1 210.05 ? O3P 5GP 503 A 1 HETATM 5 O O5' 5GP . . . E 2 58.756 54.087 -26.953 1 174.45 ? O5' 5GP 503 A 1 HETATM 6 C C5' 5GP . . . E 2 58.439 53.572 -25.66 1 166.49 ? C5' 5GP 503 A 1 HETATM 7 C C4' 5GP . . . E 2 56.932 53.396 -25.589 1 155.4 ? C4' 5GP 503 A 1 HETATM 8 O O4' 5GP . . . E 2 56.642 52.039 -25.858 1 148.83 ? O4' 5GP 503 A 1 HETATM 9 C C3' 5GP . . . E 2 56.3 53.664 -24.231 1 154.14 ? C3' 5GP 503 A 1 HETATM 10 O O3' 5GP . . . E 2 55.558 54.885 -24.19 1 153.06 ? O3' 5GP 503 A 1 HETATM 11 C C2' 5GP . . . E 2 55.297 52.57 -24.028 1 144.37 ? C2' 5GP 503 A 1 HETATM 12 O O2' 5GP . . . E 2 54.051 53.229 -24.246 1 136.44 ? O2' 5GP 503 A 1 HETATM 13 C C1' 5GP . . . E 2 55.516 51.563 -25.123 1 135.09 ? C1' 5GP 503 A 1 HETATM 14 N N9 5GP . . . E 2 55.835 50.133 -24.903 1 109.47 ? N9 5GP 503 A 1 HETATM 15 C C8 5GP . . . E 2 57.04 49.615 -24.719 1 95.03 ? C8 5GP 503 A 1 HETATM 16 N N7 5GP . . . E 2 56.981 48.275 -24.637 1 86.16 ? N7 5GP 503 A 1 HETATM 17 C C5 5GP . . . E 2 55.724 47.926 -24.824 1 85.49 ? C5 5GP 503 A 1 HETATM 18 C C6 5GP . . . E 2 54.996 46.68 -24.872 1 88.65 ? C6 5GP 503 A 1 HETATM 19 O O6 5GP . . . E 2 55.548 45.599 -24.732 1 94.14 ? O6 5GP 503 A 1 HETATM 20 N N1 5GP . . . E 2 53.719 46.733 -25.056 1 73.74 ? N1 5GP 503 A 1 HETATM 21 C C2 5GP . . . E 2 53.1 47.875 -25.216 1 73.49 ? C2 5GP 503 A 1 HETATM 22 N N2 5GP . . . E 2 51.795 47.811 -25.422 1 71.54 ? N2 5GP 503 A 1 HETATM 23 N N3 5GP . . . E 2 53.672 49.07 -25.187 1 68.66 ? N3 5GP 503 A 1 HETATM 24 C C4 5GP . . . E 2 54.977 49.145 -25.004 1 88.77 ? C4 5GP 503 A 1 HETATM 25 H "H5'1" 5GP . . . E 2 58.93 52.609 -25.509 1 199.62 ? "H5'1" 5GP 503 A 1 HETATM 26 H "H5'2" 5GP . . . E 2 58.781 54.259 -24.885 1 199.62 ? "H5'2" 5GP 503 A 1 HETATM 27 H H4' 5GP . . . E 2 56.462 54.036 -26.347 1 186.32 ? H4' 5GP 503 A 1 HETATM 28 H H3' 5GP . . . E 2 57.062 53.634 -23.441 1 184.81 ? H3' 5GP 503 A 1 HETATM 29 H HO3' 5GP . . . E 2 55.567 55.237 -23.289 1 183.51 ? HO3' 5GP 503 A 1 HETATM 30 H H2' 5GP . . . E 2 55.383 52.118 -23.033 1 173.08 ? H2' 5GP 503 A 1 HETATM 31 H HO2' 5GP . . . E 2 53.767 53.681 -23.442 1 163.57 ? HO2' 5GP 503 A 1 HETATM 32 H H1' 5GP . . . E 2 54.635 51.617 -25.774 1 161.94 ? H1' 5GP 503 A 1 HETATM 33 H H8 5GP . . . E 2 57.943 50.198 -24.619 1 113.87 ? H8 5GP 503 A 1 HETATM 34 H HN1 5GP . . . E 2 53.178 45.851 -25.09 1 88.32 ? HN1 5GP 503 A 1 HETATM 35 H HN22 5GP . . . E 2 51.335 46.914 -25.438 1 85.68 ? HN22 5GP 503 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #