data_3X0D
#
_model_server_result.job_id            JLnsUHiOafPg3l9IBKsgGg 
_model_server_result.datetime_utc      '2024-12-21 16:59:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3x0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    3X0D 
#
_exptl.entry_id    3X0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3X0D 
_cell.length_a            114.179 
_cell.length_b            114.179 
_cell.length_c            184.012 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3X0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 215 A CYS 207 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A SG CYS 353 A CYS 345 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc3 A SG CYS 355 A CYS 347 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc4 A ND1 HIS 358 A HIS 350 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     3X0D 
_atom_sites.fract_transf_matrix[1][1]    0.008758 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008758 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 701 700 SAH SAH . 
C 3 ZN A 1 702 1 ZN ZN . 
D 4 HOH A 1 801 1 HOH HOH . 
D 4 HOH A 2 802 2 HOH HOH . 
D 4 HOH A 3 803 3 HOH HOH . 
D 4 HOH A 4 804 4 HOH HOH . 
D 4 HOH A 5 805 5 HOH HOH . 
D 4 HOH A 6 806 6 HOH HOH . 
D 4 HOH A 7 807 7 HOH HOH . 
D 4 HOH A 8 808 8 HOH HOH . 
D 4 HOH A 9 809 9 HOH HOH . 
D 4 HOH A 10 810 12 HOH HOH . 
D 4 HOH A 11 811 13 HOH HOH . 
D 4 HOH A 12 812 14 HOH HOH . 
D 4 HOH A 13 813 15 HOH HOH . 
D 4 HOH A 14 814 16 HOH HOH . 
D 4 HOH A 15 815 17 HOH HOH . 
D 4 HOH A 16 816 18 HOH HOH . 
D 4 HOH A 17 817 19 HOH HOH . 
D 4 HOH A 18 818 20 HOH HOH . 
D 4 HOH A 19 819 21 HOH HOH . 
D 4 HOH A 20 820 23 HOH HOH . 
D 4 HOH A 21 821 24 HOH HOH . 
D 4 HOH A 22 822 27 HOH HOH . 
D 4 HOH A 23 823 28 HOH HOH . 
D 4 HOH A 24 824 29 HOH HOH . 
D 4 HOH A 25 825 31 HOH HOH . 
D 4 HOH A 26 826 32 HOH HOH . 
D 4 HOH A 27 827 33 HOH HOH . 
D 4 HOH A 28 828 34 HOH HOH . 
D 4 HOH A 29 829 35 HOH HOH . 
D 4 HOH A 30 830 36 HOH HOH . 
D 4 HOH A 31 831 37 HOH HOH . 
D 4 HOH A 32 832 38 HOH HOH . 
D 4 HOH A 33 833 39 HOH HOH . 
D 4 HOH A 34 834 41 HOH HOH . 
D 4 HOH A 35 835 43 HOH HOH . 
D 4 HOH A 36 836 44 HOH HOH . 
D 4 HOH A 37 837 45 HOH HOH . 
D 4 HOH A 38 838 48 HOH HOH . 
D 4 HOH A 39 839 49 HOH HOH . 
D 4 HOH A 40 840 50 HOH HOH . 
D 4 HOH A 41 841 52 HOH HOH . 
D 4 HOH A 42 842 56 HOH HOH . 
D 4 HOH A 43 843 57 HOH HOH . 
D 4 HOH A 44 844 59 HOH HOH . 
D 4 HOH A 45 845 60 HOH HOH . 
D 4 HOH A 46 846 61 HOH HOH . 
D 4 HOH A 47 847 62 HOH HOH . 
D 4 HOH A 48 848 65 HOH HOH . 
D 4 HOH A 49 849 66 HOH HOH . 
D 4 HOH A 50 850 67 HOH HOH . 
D 4 HOH A 51 851 68 HOH HOH . 
D 4 HOH A 52 852 69 HOH HOH . 
D 4 HOH A 53 853 75 HOH HOH . 
D 4 HOH A 54 854 76 HOH HOH . 
D 4 HOH A 55 855 77 HOH HOH . 
D 4 HOH A 56 856 79 HOH HOH . 
D 4 HOH A 57 857 84 HOH HOH . 
D 4 HOH A 58 858 86 HOH HOH . 
D 4 HOH A 59 859 87 HOH HOH . 
D 4 HOH A 60 860 92 HOH HOH . 
D 4 HOH A 61 861 93 HOH HOH . 
D 4 HOH A 62 862 94 HOH HOH . 
D 4 HOH A 63 863 97 HOH HOH . 
D 4 HOH A 64 864 99 HOH HOH . 
D 4 HOH A 65 865 102 HOH HOH . 
D 4 HOH A 66 866 104 HOH HOH . 
D 4 HOH A 67 867 105 HOH HOH . 
D 4 HOH A 68 868 106 HOH HOH . 
D 4 HOH A 69 869 107 HOH HOH . 
D 4 HOH A 70 870 111 HOH HOH . 
D 4 HOH A 71 871 112 HOH HOH . 
D 4 HOH A 72 872 117 HOH HOH . 
D 4 HOH A 73 873 119 HOH HOH . 
D 4 HOH A 74 874 120 HOH HOH . 
D 4 HOH A 75 875 123 HOH HOH . 
D 4 HOH A 76 876 125 HOH HOH . 
D 4 HOH A 77 877 126 HOH HOH . 
D 4 HOH A 78 878 129 HOH HOH . 
D 4 HOH A 79 879 132 HOH HOH . 
D 4 HOH A 80 880 133 HOH HOH . 
D 4 HOH A 81 881 134 HOH HOH . 
D 4 HOH A 82 882 135 HOH HOH . 
D 4 HOH A 83 883 137 HOH HOH . 
D 4 HOH A 84 884 140 HOH HOH . 
D 4 HOH A 85 885 148 HOH HOH . 
D 4 HOH A 86 886 150 HOH HOH . 
D 4 HOH A 87 887 153 HOH HOH . 
D 4 HOH A 88 888 163 HOH HOH . 
D 4 HOH A 89 889 180 HOH HOH . 
D 4 HOH A 90 890 204 HOH HOH . 
D 4 HOH A 91 891 207 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 4.909 17.892 16.428 1 48.88 ? N SAH 701 A 1 
HETATM 2 C CA SAH . . . B 2 6.055 18.567 17.088 1 60.61 ? CA SAH 701 A 1 
HETATM 3 C CB SAH . . . B 2 7.113 19.204 16.162 1 55.05 ? CB SAH 701 A 1 
HETATM 4 C CG SAH . . . B 2 6.728 20.202 15.021 1 61.51 ? CG SAH 701 A 1 
HETATM 5 S SD SAH . . . B 2 8.183 20.774 14.044 1 54.35 ? SD SAH 701 A 1 
HETATM 6 C C SAH . . . B 2 5.533 19.715 17.945 1 65.05 ? C SAH 701 A 1 
HETATM 7 O O SAH . . . B 2 4.477 20.217 17.571 1 56.4 ? O SAH 701 A 1 
HETATM 8 O OXT SAH . . . B 2 6.091 20.212 18.952 1 54.8 ? OXT SAH 701 A 1 
HETATM 9 C C5' SAH . . . B 2 8.011 19.79 12.541 1 50.72 ? C5' SAH 701 A 1 
HETATM 10 C C4' SAH . . . B 2 8.969 18.571 12.675 1 53.67 ? C4' SAH 701 A 1 
HETATM 11 O O4' SAH . . . B 2 8.761 17.403 11.888 1 56.8 ? O4' SAH 701 A 1 
HETATM 12 C C3' SAH . . . B 2 10.439 18.876 12.465 1 53.29 ? C3' SAH 701 A 1 
HETATM 13 O O3' SAH . . . B 2 11.04 18.142 13.56 1 59.91 ? O3' SAH 701 A 1 
HETATM 14 C C2' SAH . . . B 2 10.848 18.208 11.142 1 52.72 ? C2' SAH 701 A 1 
HETATM 15 O O2' SAH . . . B 2 12.089 17.487 11.319 1 48.76 ? O2' SAH 701 A 1 
HETATM 16 C C1' SAH . . . B 2 9.916 17.05 11.048 1 52.77 ? C1' SAH 701 A 1 
HETATM 17 N N9 SAH . . . B 2 9.227 16.752 9.802 1 47.92 ? N9 SAH 701 A 1 
HETATM 18 C C8 SAH . . . B 2 8.695 17.569 8.86 1 44.19 ? C8 SAH 701 A 1 
HETATM 19 N N7 SAH . . . B 2 7.995 16.803 7.916 1 43.55 ? N7 SAH 701 A 1 
HETATM 20 C C5 SAH . . . B 2 8.11 15.523 8.291 1 42.15 ? C5 SAH 701 A 1 
HETATM 21 C C6 SAH . . . B 2 7.626 14.285 7.793 1 40.23 ? C6 SAH 701 A 1 
HETATM 22 N N6 SAH . . . B 2 6.848 14.273 6.682 1 43.49 ? N6 SAH 701 A 1 
HETATM 23 N N1 SAH . . . B 2 7.914 13.183 8.506 1 40.71 ? N1 SAH 701 A 1 
HETATM 24 C C2 SAH . . . B 2 8.637 13.171 9.624 1 40.04 ? C2 SAH 701 A 1 
HETATM 25 N N3 SAH . . . B 2 9.129 14.32 10.151 1 45.65 ? N3 SAH 701 A 1 
HETATM 26 C C4 SAH . . . B 2 8.865 15.489 9.547 1 40.91 ? C4 SAH 701 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#