data_3X16 # _model_server_result.job_id vmp6KUwg_NKLAL8Bv1CYtQ _model_server_result.datetime_utc '2024-10-24 13:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 3X16 # _exptl.entry_id 3X16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X16 _cell.length_a 108.254 _cell.length_b 108.254 _cell.length_c 203.225 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -203.225 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 105 A GLY 105 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A O GLY 107 A GLY 107 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A NE2 HIS 263 A HIS 263 1_555 B FE HEB . A HEB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc4 A O THR 264 A THR 264 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc5 A OG1 THR 315 A THR 315 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 A O HIS 317 A HIS 317 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc7 A O GLN 320 A GLN 320 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 A OD2 ASP 322 A ASP 322 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc9 A OD1 ASP 322 A ASP 322 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 A O GLU 354 A GLU 354 1_555 E NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc11 A O SER 476 A SER 476 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc12 C NA NA . A NA 802 1_555 F O HOH . A HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc13 C NA NA . A NA 802 1_555 F O HOH . A HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc14 E NA NA . A NA 804 1_555 F O HOH . A HOH 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc15 E NA NA . A NA 804 1_555 F O HOH . A HOH 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3X16 _atom_sites.fract_transf_matrix[1][1] 0.009238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEB A 1 801 801 HEB HEB . C 3 NA A 1 802 802 NA NA . D 3 NA A 1 803 803 NA NA . E 3 NA A 1 804 804 NA NA . F 4 HOH A 1 901 1 HOH HOH . F 4 HOH A 2 902 2 HOH HOH . F 4 HOH A 3 903 3 HOH HOH . F 4 HOH A 4 904 4 HOH HOH . F 4 HOH A 5 905 5 HOH HOH . F 4 HOH A 6 906 6 HOH HOH . F 4 HOH A 7 907 7 HOH HOH . F 4 HOH A 8 908 8 HOH HOH . F 4 HOH A 9 909 9 HOH HOH . F 4 HOH A 10 910 10 HOH HOH . F 4 HOH A 11 911 11 HOH HOH . F 4 HOH A 12 912 12 HOH HOH . F 4 HOH A 13 913 13 HOH HOH . F 4 HOH A 14 914 14 HOH HOH . F 4 HOH A 15 915 15 HOH HOH . F 4 HOH A 16 916 16 HOH HOH . F 4 HOH A 17 917 17 HOH HOH . F 4 HOH A 18 918 18 HOH HOH . F 4 HOH A 19 919 19 HOH HOH . F 4 HOH A 20 920 20 HOH HOH . F 4 HOH A 21 921 21 HOH HOH . F 4 HOH A 22 922 22 HOH HOH . F 4 HOH A 23 923 23 HOH HOH . F 4 HOH A 24 924 24 HOH HOH . F 4 HOH A 25 925 25 HOH HOH . F 4 HOH A 26 926 26 HOH HOH . F 4 HOH A 27 927 27 HOH HOH . F 4 HOH A 28 928 28 HOH HOH . F 4 HOH A 29 929 29 HOH HOH . F 4 HOH A 30 930 30 HOH HOH . F 4 HOH A 31 931 31 HOH HOH . F 4 HOH A 32 932 32 HOH HOH . F 4 HOH A 33 933 33 HOH HOH . F 4 HOH A 34 934 34 HOH HOH . F 4 HOH A 35 935 35 HOH HOH . F 4 HOH A 36 936 36 HOH HOH . F 4 HOH A 37 937 37 HOH HOH . F 4 HOH A 38 938 38 HOH HOH . F 4 HOH A 39 939 39 HOH HOH . F 4 HOH A 40 940 40 HOH HOH . F 4 HOH A 41 941 41 HOH HOH . F 4 HOH A 42 942 42 HOH HOH . F 4 HOH A 43 943 43 HOH HOH . F 4 HOH A 44 944 44 HOH HOH . F 4 HOH A 45 945 45 HOH HOH . F 4 HOH A 46 946 46 HOH HOH . F 4 HOH A 47 947 47 HOH HOH . F 4 HOH A 48 948 48 HOH HOH . F 4 HOH A 49 949 49 HOH HOH . F 4 HOH A 50 950 50 HOH HOH . F 4 HOH A 51 951 51 HOH HOH . F 4 HOH A 52 952 52 HOH HOH . F 4 HOH A 53 953 53 HOH HOH . F 4 HOH A 54 954 54 HOH HOH . F 4 HOH A 55 955 55 HOH HOH . F 4 HOH A 56 956 56 HOH HOH . F 4 HOH A 57 957 57 HOH HOH . F 4 HOH A 58 958 58 HOH HOH . F 4 HOH A 59 959 59 HOH HOH . F 4 HOH A 60 960 60 HOH HOH . F 4 HOH A 61 961 61 HOH HOH . F 4 HOH A 62 962 62 HOH HOH . F 4 HOH A 63 963 63 HOH HOH . F 4 HOH A 64 964 64 HOH HOH . F 4 HOH A 65 965 65 HOH HOH . F 4 HOH A 66 966 66 HOH HOH . F 4 HOH A 67 967 67 HOH HOH . F 4 HOH A 68 968 68 HOH HOH . F 4 HOH A 69 969 69 HOH HOH . F 4 HOH A 70 970 70 HOH HOH . F 4 HOH A 71 971 71 HOH HOH . F 4 HOH A 72 972 72 HOH HOH . F 4 HOH A 73 973 73 HOH HOH . F 4 HOH A 74 974 74 HOH HOH . F 4 HOH A 75 975 75 HOH HOH . F 4 HOH A 76 976 76 HOH HOH . F 4 HOH A 77 977 77 HOH HOH . F 4 HOH A 78 978 78 HOH HOH . F 4 HOH A 79 979 79 HOH HOH . F 4 HOH A 80 980 80 HOH HOH . F 4 HOH A 81 981 81 HOH HOH . F 4 HOH A 82 982 82 HOH HOH . F 4 HOH A 83 983 83 HOH HOH . F 4 HOH A 84 984 84 HOH HOH . F 4 HOH A 85 985 85 HOH HOH . F 4 HOH A 86 986 86 HOH HOH . F 4 HOH A 87 987 87 HOH HOH . F 4 HOH A 88 988 88 HOH HOH . F 4 HOH A 89 989 89 HOH HOH . F 4 HOH A 90 990 90 HOH HOH . F 4 HOH A 91 991 91 HOH HOH . F 4 HOH A 92 992 92 HOH HOH . F 4 HOH A 93 993 93 HOH HOH . F 4 HOH A 94 994 94 HOH HOH . F 4 HOH A 95 995 95 HOH HOH . F 4 HOH A 96 996 96 HOH HOH . F 4 HOH A 97 997 97 HOH HOH . F 4 HOH A 98 998 98 HOH HOH . F 4 HOH A 99 999 99 HOH HOH . F 4 HOH A 100 1000 100 HOH HOH . F 4 HOH A 101 1001 101 HOH HOH . F 4 HOH A 102 1002 102 HOH HOH . F 4 HOH A 103 1003 103 HOH HOH . F 4 HOH A 104 1004 104 HOH HOH . F 4 HOH A 105 1005 105 HOH HOH . F 4 HOH A 106 1006 106 HOH HOH . F 4 HOH A 107 1007 107 HOH HOH . F 4 HOH A 108 1008 108 HOH HOH . F 4 HOH A 109 1009 109 HOH HOH . F 4 HOH A 110 1010 110 HOH HOH . F 4 HOH A 111 1011 111 HOH HOH . F 4 HOH A 112 1012 112 HOH HOH . F 4 HOH A 113 1013 113 HOH HOH . F 4 HOH A 114 1014 114 HOH HOH . F 4 HOH A 115 1015 115 HOH HOH . F 4 HOH A 116 1016 116 HOH HOH . F 4 HOH A 117 1017 117 HOH HOH . F 4 HOH A 118 1018 118 HOH HOH . F 4 HOH A 119 1019 119 HOH HOH . F 4 HOH A 120 1020 120 HOH HOH . F 4 HOH A 121 1021 121 HOH HOH . F 4 HOH A 122 1022 122 HOH HOH . F 4 HOH A 123 1023 123 HOH HOH . F 4 HOH A 124 1024 124 HOH HOH . F 4 HOH A 125 1025 125 HOH HOH . F 4 HOH A 126 1026 126 HOH HOH . F 4 HOH A 127 1027 127 HOH HOH . F 4 HOH A 128 1028 128 HOH HOH . F 4 HOH A 129 1029 129 HOH HOH . F 4 HOH A 130 1030 130 HOH HOH . F 4 HOH A 131 1031 131 HOH HOH . F 4 HOH A 132 1032 132 HOH HOH . F 4 HOH A 133 1033 133 HOH HOH . F 4 HOH A 134 1034 134 HOH HOH . F 4 HOH A 135 1035 135 HOH HOH . F 4 HOH A 136 1036 136 HOH HOH . F 4 HOH A 137 1037 137 HOH HOH . F 4 HOH A 138 1038 138 HOH HOH . F 4 HOH A 139 1039 139 HOH HOH . F 4 HOH A 140 1040 140 HOH HOH . F 4 HOH A 141 1041 141 HOH HOH . F 4 HOH A 142 1042 142 HOH HOH . F 4 HOH A 143 1043 143 HOH HOH . F 4 HOH A 144 1044 144 HOH HOH . F 4 HOH A 145 1045 145 HOH HOH . F 4 HOH A 146 1046 146 HOH HOH . F 4 HOH A 147 1047 147 HOH HOH . F 4 HOH A 148 1048 148 HOH HOH . F 4 HOH A 149 1049 149 HOH HOH . F 4 HOH A 150 1050 150 HOH HOH . F 4 HOH A 151 1051 151 HOH HOH . F 4 HOH A 152 1052 152 HOH HOH . F 4 HOH A 153 1053 153 HOH HOH . F 4 HOH A 154 1054 154 HOH HOH . F 4 HOH A 155 1055 155 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 61.421 _atom_site.Cartn_y -6.003 _atom_site.Cartn_z -78.93 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 804 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 1 #