data_3X22 # _model_server_result.job_id rb4pD9-fwXZgrDwsBieh8w _model_server_result.datetime_utc '2024-11-05 04:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3X22 # _exptl.entry_id 3X22 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X22 _cell.length_a 57.075 _cell.length_b 57.075 _cell.length_c 263.611 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3X22 _atom_sites.fract_transf_matrix[1][1] 0.017521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 1 FMN FMN . D 2 FMN B 1 301 2 FMN FMN . E 3 HOH A 1 401 2 HOH HOH . E 3 HOH A 2 402 3 HOH HOH . E 3 HOH A 3 403 7 HOH HOH . E 3 HOH A 4 404 8 HOH HOH . E 3 HOH A 5 405 9 HOH HOH . E 3 HOH A 6 406 13 HOH HOH . E 3 HOH A 7 407 14 HOH HOH . E 3 HOH A 8 408 15 HOH HOH . E 3 HOH A 9 409 16 HOH HOH . E 3 HOH A 10 410 17 HOH HOH . E 3 HOH A 11 411 18 HOH HOH . E 3 HOH A 12 412 19 HOH HOH . E 3 HOH A 13 413 21 HOH HOH . E 3 HOH A 14 414 22 HOH HOH . E 3 HOH A 15 415 23 HOH HOH . E 3 HOH A 16 416 26 HOH HOH . E 3 HOH A 17 417 27 HOH HOH . E 3 HOH A 18 418 33 HOH HOH . E 3 HOH A 19 419 36 HOH HOH . E 3 HOH A 20 420 38 HOH HOH . E 3 HOH A 21 421 40 HOH HOH . E 3 HOH A 22 422 41 HOH HOH . E 3 HOH A 23 423 42 HOH HOH . E 3 HOH A 24 424 43 HOH HOH . E 3 HOH A 25 425 45 HOH HOH . E 3 HOH A 26 426 46 HOH HOH . E 3 HOH A 27 427 50 HOH HOH . E 3 HOH A 28 428 52 HOH HOH . E 3 HOH A 29 429 54 HOH HOH . E 3 HOH A 30 430 60 HOH HOH . E 3 HOH A 31 431 61 HOH HOH . E 3 HOH A 32 432 62 HOH HOH . E 3 HOH A 33 433 71 HOH HOH . E 3 HOH A 34 434 73 HOH HOH . E 3 HOH A 35 435 74 HOH HOH . E 3 HOH A 36 436 75 HOH HOH . E 3 HOH A 37 437 77 HOH HOH . E 3 HOH A 38 438 78 HOH HOH . E 3 HOH A 39 439 80 HOH HOH . E 3 HOH A 40 440 81 HOH HOH . E 3 HOH A 41 441 82 HOH HOH . E 3 HOH A 42 442 86 HOH HOH . E 3 HOH A 43 443 89 HOH HOH . E 3 HOH A 44 444 90 HOH HOH . E 3 HOH A 45 445 91 HOH HOH . E 3 HOH A 46 446 94 HOH HOH . E 3 HOH A 47 447 95 HOH HOH . E 3 HOH A 48 448 96 HOH HOH . E 3 HOH A 49 449 97 HOH HOH . E 3 HOH A 50 450 98 HOH HOH . E 3 HOH A 51 451 99 HOH HOH . E 3 HOH A 52 452 100 HOH HOH . E 3 HOH A 53 453 101 HOH HOH . E 3 HOH A 54 454 102 HOH HOH . E 3 HOH A 55 455 103 HOH HOH . E 3 HOH A 56 456 107 HOH HOH . E 3 HOH A 57 457 110 HOH HOH . E 3 HOH A 58 458 117 HOH HOH . E 3 HOH A 59 459 120 HOH HOH . E 3 HOH A 60 460 121 HOH HOH . E 3 HOH A 61 461 122 HOH HOH . E 3 HOH A 62 462 123 HOH HOH . E 3 HOH A 63 463 124 HOH HOH . E 3 HOH A 64 464 126 HOH HOH . E 3 HOH A 65 465 128 HOH HOH . E 3 HOH A 66 466 135 HOH HOH . E 3 HOH A 67 467 136 HOH HOH . E 3 HOH A 68 468 137 HOH HOH . E 3 HOH A 69 469 139 HOH HOH . E 3 HOH A 70 470 142 HOH HOH . E 3 HOH A 71 471 143 HOH HOH . E 3 HOH A 72 472 146 HOH HOH . E 3 HOH A 73 473 148 HOH HOH . E 3 HOH A 74 474 156 HOH HOH . E 3 HOH A 75 475 158 HOH HOH . E 3 HOH A 76 476 160 HOH HOH . E 3 HOH A 77 477 165 HOH HOH . E 3 HOH A 78 478 166 HOH HOH . E 3 HOH A 79 479 167 HOH HOH . E 3 HOH A 80 480 172 HOH HOH . E 3 HOH A 81 481 179 HOH HOH . E 3 HOH A 82 482 183 HOH HOH . E 3 HOH A 83 483 184 HOH HOH . E 3 HOH A 84 484 186 HOH HOH . E 3 HOH A 85 485 187 HOH HOH . E 3 HOH A 86 486 189 HOH HOH . E 3 HOH A 87 487 191 HOH HOH . E 3 HOH A 88 488 192 HOH HOH . E 3 HOH A 89 489 193 HOH HOH . E 3 HOH A 90 490 194 HOH HOH . E 3 HOH A 91 491 195 HOH HOH . E 3 HOH A 92 492 196 HOH HOH . E 3 HOH A 93 493 197 HOH HOH . E 3 HOH A 94 494 201 HOH HOH . E 3 HOH A 95 495 206 HOH HOH . E 3 HOH A 96 496 209 HOH HOH . E 3 HOH A 97 497 211 HOH HOH . E 3 HOH A 98 498 212 HOH HOH . E 3 HOH A 99 499 214 HOH HOH . E 3 HOH A 100 500 219 HOH HOH . E 3 HOH A 101 501 220 HOH HOH . E 3 HOH A 102 502 221 HOH HOH . E 3 HOH A 103 503 224 HOH HOH . E 3 HOH A 104 504 227 HOH HOH . E 3 HOH A 105 505 232 HOH HOH . E 3 HOH A 106 506 242 HOH HOH . E 3 HOH A 107 507 243 HOH HOH . E 3 HOH A 108 508 245 HOH HOH . E 3 HOH A 109 509 247 HOH HOH . E 3 HOH A 110 510 248 HOH HOH . E 3 HOH A 111 511 250 HOH HOH . E 3 HOH A 112 512 251 HOH HOH . E 3 HOH A 113 513 252 HOH HOH . E 3 HOH A 114 514 253 HOH HOH . E 3 HOH A 115 515 255 HOH HOH . F 3 HOH B 1 401 1 HOH HOH . F 3 HOH B 2 402 4 HOH HOH . F 3 HOH B 3 403 5 HOH HOH . F 3 HOH B 4 404 6 HOH HOH . F 3 HOH B 5 405 10 HOH HOH . F 3 HOH B 6 406 11 HOH HOH . F 3 HOH B 7 407 20 HOH HOH . F 3 HOH B 8 408 24 HOH HOH . F 3 HOH B 9 409 25 HOH HOH . F 3 HOH B 10 410 28 HOH HOH . F 3 HOH B 11 411 30 HOH HOH . F 3 HOH B 12 412 31 HOH HOH . F 3 HOH B 13 413 32 HOH HOH . F 3 HOH B 14 414 34 HOH HOH . F 3 HOH B 15 415 35 HOH HOH . F 3 HOH B 16 416 37 HOH HOH . F 3 HOH B 17 417 39 HOH HOH . F 3 HOH B 18 418 44 HOH HOH . F 3 HOH B 19 419 47 HOH HOH . F 3 HOH B 20 420 49 HOH HOH . F 3 HOH B 21 421 51 HOH HOH . F 3 HOH B 22 422 53 HOH HOH . F 3 HOH B 23 423 56 HOH HOH . F 3 HOH B 24 424 57 HOH HOH . F 3 HOH B 25 425 58 HOH HOH . F 3 HOH B 26 426 59 HOH HOH . F 3 HOH B 27 427 63 HOH HOH . F 3 HOH B 28 428 64 HOH HOH . F 3 HOH B 29 429 65 HOH HOH . F 3 HOH B 30 430 66 HOH HOH . F 3 HOH B 31 431 67 HOH HOH . F 3 HOH B 32 432 68 HOH HOH . F 3 HOH B 33 433 69 HOH HOH . F 3 HOH B 34 434 70 HOH HOH . F 3 HOH B 35 435 72 HOH HOH . F 3 HOH B 36 436 76 HOH HOH . F 3 HOH B 37 437 79 HOH HOH . F 3 HOH B 38 438 83 HOH HOH . F 3 HOH B 39 439 84 HOH HOH . F 3 HOH B 40 440 85 HOH HOH . F 3 HOH B 41 441 87 HOH HOH . F 3 HOH B 42 442 88 HOH HOH . F 3 HOH B 43 443 92 HOH HOH . F 3 HOH B 44 444 93 HOH HOH . F 3 HOH B 45 445 104 HOH HOH . F 3 HOH B 46 446 105 HOH HOH . F 3 HOH B 47 447 106 HOH HOH . F 3 HOH B 48 448 108 HOH HOH . F 3 HOH B 49 449 109 HOH HOH . F 3 HOH B 50 450 111 HOH HOH . F 3 HOH B 51 451 114 HOH HOH . F 3 HOH B 52 452 115 HOH HOH . F 3 HOH B 53 453 116 HOH HOH . F 3 HOH B 54 454 118 HOH HOH . F 3 HOH B 55 455 119 HOH HOH . F 3 HOH B 56 456 125 HOH HOH . F 3 HOH B 57 457 127 HOH HOH . F 3 HOH B 58 458 129 HOH HOH . F 3 HOH B 59 459 130 HOH HOH . F 3 HOH B 60 460 131 HOH HOH . F 3 HOH B 61 461 132 HOH HOH . F 3 HOH B 62 462 133 HOH HOH . F 3 HOH B 63 463 134 HOH HOH . F 3 HOH B 64 464 138 HOH HOH . F 3 HOH B 65 465 140 HOH HOH . F 3 HOH B 66 466 141 HOH HOH . F 3 HOH B 67 467 144 HOH HOH . F 3 HOH B 68 468 145 HOH HOH . F 3 HOH B 69 469 147 HOH HOH . F 3 HOH B 70 470 149 HOH HOH . F 3 HOH B 71 471 150 HOH HOH . F 3 HOH B 72 472 151 HOH HOH . F 3 HOH B 73 473 152 HOH HOH . F 3 HOH B 74 474 153 HOH HOH . F 3 HOH B 75 475 154 HOH HOH . F 3 HOH B 76 476 155 HOH HOH . F 3 HOH B 77 477 157 HOH HOH . F 3 HOH B 78 478 159 HOH HOH . F 3 HOH B 79 479 161 HOH HOH . F 3 HOH B 80 480 163 HOH HOH . F 3 HOH B 81 481 168 HOH HOH . F 3 HOH B 82 482 173 HOH HOH . F 3 HOH B 83 483 174 HOH HOH . F 3 HOH B 84 484 176 HOH HOH . F 3 HOH B 85 485 177 HOH HOH . F 3 HOH B 86 486 178 HOH HOH . F 3 HOH B 87 487 181 HOH HOH . F 3 HOH B 88 488 185 HOH HOH . F 3 HOH B 89 489 188 HOH HOH . F 3 HOH B 90 490 198 HOH HOH . F 3 HOH B 91 491 199 HOH HOH . F 3 HOH B 92 492 200 HOH HOH . F 3 HOH B 93 493 202 HOH HOH . F 3 HOH B 94 494 204 HOH HOH . F 3 HOH B 95 495 205 HOH HOH . F 3 HOH B 96 496 208 HOH HOH . F 3 HOH B 97 497 210 HOH HOH . F 3 HOH B 98 498 215 HOH HOH . F 3 HOH B 99 499 216 HOH HOH . F 3 HOH B 100 500 223 HOH HOH . F 3 HOH B 101 501 225 HOH HOH . F 3 HOH B 102 502 226 HOH HOH . F 3 HOH B 103 503 229 HOH HOH . F 3 HOH B 104 504 230 HOH HOH . F 3 HOH B 105 505 231 HOH HOH . F 3 HOH B 106 506 233 HOH HOH . F 3 HOH B 107 507 235 HOH HOH . F 3 HOH B 108 508 237 HOH HOH . F 3 HOH B 109 509 238 HOH HOH . F 3 HOH B 110 510 239 HOH HOH . F 3 HOH B 111 511 241 HOH HOH . F 3 HOH B 112 512 244 HOH HOH . F 3 HOH B 113 513 246 HOH HOH . F 3 HOH B 114 514 249 HOH HOH . F 3 HOH B 115 515 254 HOH HOH . F 3 HOH B 116 516 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 10.462 35.078 -19.246 1 22.64 ? N1 FMN 301 B 1 HETATM 2 C C2 FMN . . . D 2 10.54 36.402 -18.863 1 32.24 ? C2 FMN 301 B 1 HETATM 3 O O2 FMN . . . D 2 11.124 37.212 -19.584 1 33.04 ? O2 FMN 301 B 1 HETATM 4 N N3 FMN . . . D 2 9.965 36.819 -17.677 1 26.18 ? N3 FMN 301 B 1 HETATM 5 C C4 FMN . . . D 2 9.309 35.911 -16.868 1 25.45 ? C4 FMN 301 B 1 HETATM 6 O O4 FMN . . . D 2 8.798 36.278 -15.812 1 22.88 ? O4 FMN 301 B 1 HETATM 7 C C4A FMN . . . D 2 9.232 34.578 -17.251 1 25.37 ? C4A FMN 301 B 1 HETATM 8 N N5 FMN . . . D 2 8.579 33.667 -16.447 1 20.96 ? N5 FMN 301 B 1 HETATM 9 C C5A FMN . . . D 2 8.497 32.344 -16.825 1 21.58 ? C5A FMN 301 B 1 HETATM 10 C C6 FMN . . . D 2 7.831 31.435 -16.009 1 19.52 ? C6 FMN 301 B 1 HETATM 11 C C7 FMN . . . D 2 7.745 30.101 -16.385 1 17.39 ? C7 FMN 301 B 1 HETATM 12 C C7M FMN . . . D 2 7.032 29.107 -15.514 1 17.72 ? C7M FMN 301 B 1 HETATM 13 C C8 FMN . . . D 2 8.321 29.681 -17.575 1 19.32 ? C8 FMN 301 B 1 HETATM 14 C C8M FMN . . . D 2 8.217 28.245 -17.981 1 14.74 ? C8M FMN 301 B 1 HETATM 15 C C9 FMN . . . D 2 8.988 30.586 -18.388 1 19.82 ? C9 FMN 301 B 1 HETATM 16 C C9A FMN . . . D 2 9.075 31.926 -18.023 1 22.05 ? C9A FMN 301 B 1 HETATM 17 N N10 FMN . . . D 2 9.739 32.838 -18.828 1 20.06 ? N10 FMN 301 B 1 HETATM 18 C C10 FMN . . . D 2 9.811 34.163 -18.445 1 23.09 ? C10 FMN 301 B 1 HETATM 19 C C1' FMN . . . D 2 10.363 32.416 -20.129 1 19.07 ? C1' FMN 301 B 1 HETATM 20 C C2' FMN . . . D 2 11.713 31.718 -19.961 1 17.35 ? C2' FMN 301 B 1 HETATM 21 O O2' FMN . . . D 2 12.745 32.667 -19.825 1 20.83 ? O2' FMN 301 B 1 HETATM 22 C C3' FMN . . . D 2 11.969 30.873 -21.203 1 22.65 ? C3' FMN 301 B 1 HETATM 23 O O3' FMN . . . D 2 10.941 29.918 -21.343 1 18.8 ? O3' FMN 301 B 1 HETATM 24 C C4' FMN . . . D 2 13.313 30.162 -21.173 1 19.21 ? C4' FMN 301 B 1 HETATM 25 O O4' FMN . . . D 2 14.347 31.115 -21.107 1 16.97 ? O4' FMN 301 B 1 HETATM 26 C C5' FMN . . . D 2 13.458 29.307 -22.427 1 20.23 ? C5' FMN 301 B 1 HETATM 27 O O5' FMN . . . D 2 13.423 30.113 -23.587 1 17.29 ? O5' FMN 301 B 1 HETATM 28 P P FMN . . . D 2 12.288 29.878 -24.707 1 19.19 ? P FMN 301 B 1 HETATM 29 O O1P FMN . . . D 2 12.376 31.011 -25.701 1 21.78 ? O1P FMN 301 B 1 HETATM 30 O O2P FMN . . . D 2 10.918 29.896 -24.075 1 19.62 ? O2P FMN 301 B 1 HETATM 31 O O3P FMN . . . D 2 12.501 28.545 -25.39 1 17.86 ? O3P FMN 301 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #