data_3X25 # _model_server_result.job_id bSVVwJvyVccsJLhEq0nS1w _model_server_result.datetime_utc '2025-07-27 14:45:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3X25 # _exptl.entry_id 3X25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.07 _cell.angle_gamma 90 _cell.entry_id 3X25 _cell.length_a 114.178 _cell.length_b 60.002 _cell.length_c 81.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 112 A LEU 111 1_555 A N CSD 113 A CSD 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C CSD 113 A CSD 112 1_555 A N SER 114 A SER 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C SER 114 A SER 113 1_555 A N CSO 115 A CSO 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C CSO 115 A CSO 114 1_555 A N THR 116 A THR 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 110 A CYS 109 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A SG CSD 113 A CSD 112 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A N SER 114 A SER 113 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 A N CSO 115 A CSO 114 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc5 A SG CSO 115 A CSO 114 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 C FE FE . A FE 301 1_555 D N TAN . A TAN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 F MG MG . B MG 302 1_555 I O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3X25 _atom_sites.fract_transf_matrix[1][1] 0.008758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FE A 1 301 301 FE FE . D 4 TAN A 1 302 302 TAN TAN . E 5 CL B 1 301 301 CL CL . F 6 MG B 1 302 302 MG MG . G 5 CL B 1 303 303 CL CL . H 7 HOH A 1 401 401 HOH HOH . H 7 HOH A 2 402 402 HOH HOH . H 7 HOH A 3 403 403 HOH HOH . H 7 HOH A 4 404 404 HOH HOH . H 7 HOH A 5 405 405 HOH HOH . H 7 HOH A 6 406 406 HOH HOH . H 7 HOH A 7 407 407 HOH HOH . H 7 HOH A 8 408 408 HOH HOH . H 7 HOH A 9 409 409 HOH HOH . H 7 HOH A 10 410 410 HOH HOH . H 7 HOH A 11 411 411 HOH HOH . H 7 HOH A 12 412 412 HOH HOH . H 7 HOH A 13 413 413 HOH HOH . H 7 HOH A 14 414 414 HOH HOH . H 7 HOH A 15 415 415 HOH HOH . H 7 HOH A 16 416 416 HOH HOH . H 7 HOH A 17 417 417 HOH HOH . H 7 HOH A 18 418 418 HOH HOH . H 7 HOH A 19 419 419 HOH HOH . H 7 HOH A 20 420 420 HOH HOH . H 7 HOH A 21 421 421 HOH HOH . H 7 HOH A 22 422 422 HOH HOH . H 7 HOH A 23 423 423 HOH HOH . H 7 HOH A 24 424 424 HOH HOH . H 7 HOH A 25 425 425 HOH HOH . H 7 HOH A 26 426 426 HOH HOH . H 7 HOH A 27 427 427 HOH HOH . H 7 HOH A 28 428 428 HOH HOH . H 7 HOH A 29 429 429 HOH HOH . H 7 HOH A 30 430 430 HOH HOH . H 7 HOH A 31 431 431 HOH HOH . H 7 HOH A 32 432 432 HOH HOH . H 7 HOH A 33 433 433 HOH HOH . H 7 HOH A 34 434 435 HOH HOH . H 7 HOH A 35 435 436 HOH HOH . H 7 HOH A 36 436 437 HOH HOH . H 7 HOH A 37 437 438 HOH HOH . H 7 HOH A 38 438 439 HOH HOH . H 7 HOH A 39 439 440 HOH HOH . H 7 HOH A 40 440 441 HOH HOH . H 7 HOH A 41 441 442 HOH HOH . H 7 HOH A 42 442 443 HOH HOH . H 7 HOH A 43 443 444 HOH HOH . H 7 HOH A 44 444 445 HOH HOH . H 7 HOH A 45 445 446 HOH HOH . H 7 HOH A 46 446 447 HOH HOH . H 7 HOH A 47 447 448 HOH HOH . H 7 HOH A 48 448 449 HOH HOH . H 7 HOH A 49 449 450 HOH HOH . H 7 HOH A 50 450 451 HOH HOH . H 7 HOH A 51 451 452 HOH HOH . H 7 HOH A 52 452 453 HOH HOH . H 7 HOH A 53 453 454 HOH HOH . H 7 HOH A 54 454 455 HOH HOH . H 7 HOH A 55 455 456 HOH HOH . H 7 HOH A 56 456 457 HOH HOH . H 7 HOH A 57 457 458 HOH HOH . H 7 HOH A 58 458 459 HOH HOH . H 7 HOH A 59 459 460 HOH HOH . H 7 HOH A 60 460 461 HOH HOH . H 7 HOH A 61 461 462 HOH HOH . H 7 HOH A 62 462 463 HOH HOH . H 7 HOH A 63 463 464 HOH HOH . H 7 HOH A 64 464 465 HOH HOH . H 7 HOH A 65 465 466 HOH HOH . H 7 HOH A 66 466 467 HOH HOH . H 7 HOH A 67 467 468 HOH HOH . H 7 HOH A 68 468 469 HOH HOH . H 7 HOH A 69 469 470 HOH HOH . H 7 HOH A 70 470 471 HOH HOH . H 7 HOH A 71 471 472 HOH HOH . H 7 HOH A 72 472 473 HOH HOH . H 7 HOH A 73 473 474 HOH HOH . H 7 HOH A 74 474 475 HOH HOH . H 7 HOH A 75 475 476 HOH HOH . H 7 HOH A 76 476 477 HOH HOH . H 7 HOH A 77 477 478 HOH HOH . H 7 HOH A 78 478 479 HOH HOH . H 7 HOH A 79 479 480 HOH HOH . H 7 HOH A 80 480 481 HOH HOH . H 7 HOH A 81 481 482 HOH HOH . H 7 HOH A 82 482 483 HOH HOH . H 7 HOH A 83 483 484 HOH HOH . H 7 HOH A 84 484 485 HOH HOH . H 7 HOH A 85 485 486 HOH HOH . H 7 HOH A 86 486 487 HOH HOH . H 7 HOH A 87 487 488 HOH HOH . H 7 HOH A 88 488 489 HOH HOH . H 7 HOH A 89 489 490 HOH HOH . H 7 HOH A 90 490 491 HOH HOH . H 7 HOH A 91 491 492 HOH HOH . H 7 HOH A 92 492 493 HOH HOH . H 7 HOH A 93 493 494 HOH HOH . H 7 HOH A 94 494 495 HOH HOH . H 7 HOH A 95 495 496 HOH HOH . H 7 HOH A 96 496 497 HOH HOH . H 7 HOH A 97 497 498 HOH HOH . H 7 HOH A 98 498 499 HOH HOH . H 7 HOH A 99 499 500 HOH HOH . H 7 HOH A 100 500 501 HOH HOH . H 7 HOH A 101 501 502 HOH HOH . H 7 HOH A 102 502 503 HOH HOH . H 7 HOH A 103 503 504 HOH HOH . H 7 HOH A 104 504 505 HOH HOH . H 7 HOH A 105 505 506 HOH HOH . H 7 HOH A 106 506 507 HOH HOH . H 7 HOH A 107 507 508 HOH HOH . H 7 HOH A 108 508 509 HOH HOH . H 7 HOH A 109 509 510 HOH HOH . H 7 HOH A 110 510 511 HOH HOH . H 7 HOH A 111 511 512 HOH HOH . H 7 HOH A 112 512 513 HOH HOH . H 7 HOH A 113 513 514 HOH HOH . H 7 HOH A 114 514 515 HOH HOH . H 7 HOH A 115 515 516 HOH HOH . H 7 HOH A 116 516 517 HOH HOH . H 7 HOH A 117 517 518 HOH HOH . H 7 HOH A 118 518 519 HOH HOH . H 7 HOH A 119 519 520 HOH HOH . H 7 HOH A 120 520 521 HOH HOH . H 7 HOH A 121 521 522 HOH HOH . H 7 HOH A 122 522 523 HOH HOH . H 7 HOH A 123 523 524 HOH HOH . H 7 HOH A 124 524 473 HOH HOH . I 7 HOH B 1 401 434 HOH HOH . I 7 HOH B 2 402 401 HOH HOH . I 7 HOH B 3 403 402 HOH HOH . I 7 HOH B 4 404 403 HOH HOH . I 7 HOH B 5 405 404 HOH HOH . I 7 HOH B 6 406 405 HOH HOH . I 7 HOH B 7 407 406 HOH HOH . I 7 HOH B 8 408 407 HOH HOH . I 7 HOH B 9 409 408 HOH HOH . I 7 HOH B 10 410 409 HOH HOH . I 7 HOH B 11 411 410 HOH HOH . I 7 HOH B 12 412 411 HOH HOH . I 7 HOH B 13 413 412 HOH HOH . I 7 HOH B 14 414 413 HOH HOH . I 7 HOH B 15 415 414 HOH HOH . I 7 HOH B 16 416 415 HOH HOH . I 7 HOH B 17 417 416 HOH HOH . I 7 HOH B 18 418 417 HOH HOH . I 7 HOH B 19 419 418 HOH HOH . I 7 HOH B 20 420 419 HOH HOH . I 7 HOH B 21 421 420 HOH HOH . I 7 HOH B 22 422 421 HOH HOH . I 7 HOH B 23 423 422 HOH HOH . I 7 HOH B 24 424 423 HOH HOH . I 7 HOH B 25 425 424 HOH HOH . I 7 HOH B 26 426 425 HOH HOH . I 7 HOH B 27 427 426 HOH HOH . I 7 HOH B 28 428 427 HOH HOH . I 7 HOH B 29 429 428 HOH HOH . I 7 HOH B 30 430 429 HOH HOH . I 7 HOH B 31 431 430 HOH HOH . I 7 HOH B 32 432 431 HOH HOH . I 7 HOH B 33 433 432 HOH HOH . I 7 HOH B 34 434 433 HOH HOH . I 7 HOH B 35 435 434 HOH HOH . I 7 HOH B 36 436 435 HOH HOH . I 7 HOH B 37 437 436 HOH HOH . I 7 HOH B 38 438 437 HOH HOH . I 7 HOH B 39 439 438 HOH HOH . I 7 HOH B 40 440 439 HOH HOH . I 7 HOH B 41 441 440 HOH HOH . I 7 HOH B 42 442 441 HOH HOH . I 7 HOH B 43 443 442 HOH HOH . I 7 HOH B 44 444 443 HOH HOH . I 7 HOH B 45 445 444 HOH HOH . I 7 HOH B 46 446 445 HOH HOH . I 7 HOH B 47 447 446 HOH HOH . I 7 HOH B 48 448 447 HOH HOH . I 7 HOH B 49 449 448 HOH HOH . I 7 HOH B 50 450 449 HOH HOH . I 7 HOH B 51 451 450 HOH HOH . I 7 HOH B 52 452 451 HOH HOH . I 7 HOH B 53 453 452 HOH HOH . I 7 HOH B 54 454 453 HOH HOH . I 7 HOH B 55 455 454 HOH HOH . I 7 HOH B 56 456 455 HOH HOH . I 7 HOH B 57 457 456 HOH HOH . I 7 HOH B 58 458 457 HOH HOH . I 7 HOH B 59 459 458 HOH HOH . I 7 HOH B 60 460 459 HOH HOH . I 7 HOH B 61 461 460 HOH HOH . I 7 HOH B 62 462 461 HOH HOH . I 7 HOH B 63 463 462 HOH HOH . I 7 HOH B 64 464 463 HOH HOH . I 7 HOH B 65 465 464 HOH HOH . I 7 HOH B 66 466 465 HOH HOH . I 7 HOH B 67 467 466 HOH HOH . I 7 HOH B 68 468 467 HOH HOH . I 7 HOH B 69 469 468 HOH HOH . I 7 HOH B 70 470 469 HOH HOH . I 7 HOH B 71 471 470 HOH HOH . I 7 HOH B 72 472 471 HOH HOH . I 7 HOH B 73 473 472 HOH HOH . I 7 HOH B 74 474 474 HOH HOH . I 7 HOH B 75 475 475 HOH HOH . I 7 HOH B 76 476 476 HOH HOH . I 7 HOH B 77 477 477 HOH HOH . I 7 HOH B 78 478 478 HOH HOH . I 7 HOH B 79 479 479 HOH HOH . I 7 HOH B 80 480 480 HOH HOH . I 7 HOH B 81 481 481 HOH HOH . I 7 HOH B 82 482 482 HOH HOH . I 7 HOH B 83 483 483 HOH HOH . I 7 HOH B 84 484 484 HOH HOH . I 7 HOH B 85 485 485 HOH HOH . I 7 HOH B 86 486 486 HOH HOH . I 7 HOH B 87 487 487 HOH HOH . I 7 HOH B 88 488 488 HOH HOH . I 7 HOH B 89 489 489 HOH HOH . I 7 HOH B 90 490 490 HOH HOH . I 7 HOH B 91 491 491 HOH HOH . I 7 HOH B 92 492 492 HOH HOH . I 7 HOH B 93 493 493 HOH HOH . I 7 HOH B 94 494 494 HOH HOH . I 7 HOH B 95 495 495 HOH HOH . I 7 HOH B 96 496 496 HOH HOH . I 7 HOH B 97 497 497 HOH HOH . I 7 HOH B 98 498 498 HOH HOH . I 7 HOH B 99 499 499 HOH HOH . I 7 HOH B 100 500 500 HOH HOH . I 7 HOH B 101 501 501 HOH HOH . I 7 HOH B 102 502 502 HOH HOH . I 7 HOH B 103 503 503 HOH HOH . I 7 HOH B 104 504 504 HOH HOH . I 7 HOH B 105 505 505 HOH HOH . I 7 HOH B 106 506 506 HOH HOH . I 7 HOH B 107 507 507 HOH HOH . I 7 HOH B 108 508 508 HOH HOH . I 7 HOH B 109 509 509 HOH HOH . I 7 HOH B 110 510 510 HOH HOH . I 7 HOH B 111 511 511 HOH HOH . I 7 HOH B 112 512 512 HOH HOH . I 7 HOH B 113 513 513 HOH HOH . I 7 HOH B 114 514 514 HOH HOH . I 7 HOH B 115 515 515 HOH HOH . I 7 HOH B 116 516 516 HOH HOH . I 7 HOH B 117 517 517 HOH HOH . I 7 HOH B 118 518 518 HOH HOH . I 7 HOH B 119 519 519 HOH HOH . I 7 HOH B 120 520 520 HOH HOH . I 7 HOH B 121 521 521 HOH HOH . I 7 HOH B 122 522 522 HOH HOH . I 7 HOH B 123 523 523 HOH HOH . I 7 HOH B 124 524 524 HOH HOH . I 7 HOH B 125 525 525 HOH HOH . I 7 HOH B 126 526 526 HOH HOH . I 7 HOH B 127 527 527 HOH HOH . I 7 HOH B 128 528 528 HOH HOH . I 7 HOH B 129 529 529 HOH HOH . I 7 HOH B 130 530 530 HOH HOH . I 7 HOH B 131 531 531 HOH HOH . I 7 HOH B 132 532 532 HOH HOH . I 7 HOH B 133 533 533 HOH HOH . I 7 HOH B 134 534 534 HOH HOH . I 7 HOH B 135 535 535 HOH HOH . I 7 HOH B 136 536 536 HOH HOH . I 7 HOH B 137 537 537 HOH HOH . I 7 HOH B 138 538 538 HOH HOH . I 7 HOH B 139 539 539 HOH HOH . I 7 HOH B 140 540 540 HOH HOH . I 7 HOH B 141 541 541 HOH HOH . I 7 HOH B 142 542 542 HOH HOH . I 7 HOH B 143 543 543 HOH HOH . I 7 HOH B 144 544 544 HOH HOH . I 7 HOH B 145 545 545 HOH HOH . I 7 HOH B 146 546 546 HOH HOH . I 7 HOH B 147 547 547 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 105.518 _atom_site.Cartn_y 41.964 _atom_site.Cartn_z -9.324 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #